RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 ZGPATQ8N5A5 531 aaKnown RBP13.53□□□□□ -0.24
CHD3-216ENST00000573936 MYOZ2Q9NPC6 264 aa13.53□□□□□ -0.24
CHD3-216ENST00000573936 PDS5AQ29RF7 1337 aaKnown RBP13.53□□□□□ -0.24
CHD3-216ENST00000573936 APBB1O00213 710 aa13.52□□□□□ -0.25
CHD3-216ENST00000573936 ARID4AP29374 1257 aaPredicted RBP13.52□□□□□ -0.25
CHD3-216ENST00000573936 RGS19P49795 217 aa13.52□□□□□ -0.25
CHD3-216ENST00000573936 HIRAP54198 1017 aaPredicted RBP13.52□□□□□ -0.25
CHD3-216ENST00000573936 TBC1D10BQ4KMP7 808 aaPredicted RBP13.52□□□□□ -0.25
CHD3-216ENST00000573936 TTC39AQ5SRH9 613 aa13.52□□□□□ -0.25
CHD3-216ENST00000573936 RBM26Q5T8P6 1007 aaKnown RBP13.52□□□□□ -0.25
CHD3-216ENST00000573936 SAMD7Q7Z3H4 446 aa13.52□□□□□ -0.25
CHD3-216ENST00000573936 SAPCD2Q86UD0 394 aa13.52□□□□□ -0.25
CHD3-216ENST00000573936 AACSQ86V21 672 aa13.52□□□□□ -0.25
CHD3-216ENST00000573936 CERS5Q8N5B7 392 aa13.52□□□□□ -0.25
CHD3-216ENST00000573936 EAF2Q96CJ1 260 aaPredicted RBP13.52□□□□□ -0.25
CHD3-216ENST00000573936 DBNDD2Q9BQY9 259 aa13.52□□□□□ -0.25
CHD3-216ENST00000573936 LRRCC1Q9C099 1032 aa13.52□□□□□ -0.25
CHD3-216ENST00000573936 CCDC8Q9H0W5 538 aaPredicted RBP13.52□□□□□ -0.25
CHD3-216ENST00000573936 RWDD1Q9H446 243 aaPredicted RBP13.52□□□□□ -0.25
CHD3-216ENST00000573936 JAG2Q9Y219 1238 aa13.52□□□□□ -0.25
CHD3-216ENST00000573936 MAST3O60307 1309 aa13.51□□□□□ -0.25
CHD3-216ENST00000573936 SALL1Q9NSC2 1324 aa13.51□□□□□ -0.25
CHD3-216ENST00000573936 IFIT2P09913 472 aaKnown RBP13.51□□□□□ -0.25
CHD3-216ENST00000573936 HDAC1Q13547 482 aaPredicted RBP13.51□□□□□ -0.25
CHD3-216ENST00000573936 HHIPL1Q96JK4 782 aa13.51□□□□□ -0.25
CHD3-216ENST00000573936 ZNF512BQ96KM6 892 aaPredicted RBP13.51□□□□□ -0.25
CHD3-216ENST00000573936 MRIQ9BWK5 157 aa13.51□□□□□ -0.25
CHD3-216ENST00000573936 IL1RAPL2Q9NP60 686 aa13.51□□□□□ -0.25
CHD3-216ENST00000573936 PGAP2Q9UHJ9 254 aa13.51□□□□□ -0.25
CHD3-216ENST00000573936 ARAP2Q8WZ64 1704 aa13.5□□□□□ -0.25
CHD3-216ENST00000573936 F8W031 263 aaPredicted RBP13.5□□□□□ -0.25
CHD3-216ENST00000573936 HDLBPQ00341 1268 aaKnown RBP13.5□□□□□ -0.25
CHD3-216ENST00000573936 DGKZQ13574 1117 aa13.5□□□□□ -0.25
CHD3-216ENST00000573936 DLGAP5Q15398 846 aa13.5□□□□□ -0.25
CHD3-216ENST00000573936 SPTY2D1Q68D10 685 aaPredicted RBP13.5□□□□□ -0.25
CHD3-216ENST00000573936 CDC37L1Q7L3B6 337 aa13.5□□□□□ -0.25
CHD3-216ENST00000573936 MTMR14Q8NCE2 650 aa13.5□□□□□ -0.25
CHD3-216ENST00000573936 GCC1Q96CN9 775 aa13.5□□□□□ -0.25
CHD3-216ENST00000573936 MCOLN1Q9GZU1 580 aa13.5□□□□□ -0.25
CHD3-216ENST00000573936 ZBTB47Q9UFB7 747 aaPredicted RBP13.5□□□□□ -0.25
CHD3-216ENST00000573936 SERPINA10Q9UK55 444 aa13.5□□□□□ -0.25
CHD3-216ENST00000573936 TTF2Q9UNY4 1162 aaKnown RBP13.5□□□□□ -0.25
CHD3-216ENST00000573936 LDHBP07195 334 aaKnown RBP13.49□□□□□ -0.25
CHD3-216ENST00000573936 RASGRF1Q13972 1273 aa13.49□□□□□ -0.25
CHD3-216ENST00000573936 SCARF1Q14162 830 aa13.49□□□□□ -0.25
CHD3-216ENST00000573936 SPATA5Q8NB90 893 aa13.49□□□□□ -0.25
CHD3-216ENST00000573936 DCPSQ96C86 337 aaKnown RBP13.49□□□□□ -0.25
CHD3-216ENST00000573936 DBNLQ9UJU6 430 aaKnown RBP13.49□□□□□ -0.25
CHD3-216ENST00000573936 MYO1BO43795 1136 aa13.48□□□□□ -0.25
CHD3-216ENST00000573936 IGSF3O75054 1194 aa13.48□□□□□ -0.25
CHD3-216ENST00000573936 EGFRP00533 1210 aa13.48□□□□□ -0.25
CHD3-216ENST00000573936 RBM5P52756 815 aaKnown RBP eCLIP13.48□□□□□ -0.25
CHD3-216ENST00000573936 IRX6P78412 446 aaPredicted RBP13.48□□□□□ -0.25
CHD3-216ENST00000573936 NOGQ13253 232 aa13.48□□□□□ -0.25
CHD3-216ENST00000573936 CFAP100Q494V2 611 aa13.48□□□□□ -0.25
CHD3-216ENST00000573936 DLK2Q6UY11 383 aa13.48□□□□□ -0.25
CHD3-216ENST00000573936 USP48Q86UV5 1035 aa13.48□□□□□ -0.25
CHD3-216ENST00000573936 HMG20BQ9P0W2 317 aa13.48□□□□□ -0.25
CHD3-216ENST00000573936 PITPNM2Q9BZ72 1349 aa13.47□□□□□ -0.25
CHD3-216ENST00000573936 WNT10BO00744 389 aa13.47□□□□□ -0.25
CHD3-216ENST00000573936 MCAMP43121 646 aa13.47□□□□□ -0.25
CHD3-216ENST00000573936 CRKP46108 304 aa13.47□□□□□ -0.25
CHD3-216ENST00000573936 ERICH6Q7L0X2 663 aa13.47□□□□□ -0.25
CHD3-216ENST00000573936 SLF2Q8IX21 1173 aa13.47□□□□□ -0.25
CHD3-216ENST00000573936 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.47□□□□□ -0.25
CHD3-216ENST00000573936 TEKT1Q969V4 418 aa13.47□□□□□ -0.25
CHD3-216ENST00000573936 TLR7Q9NYK1 1049 aaKnown RBP13.47□□□□□ -0.25
CHD3-216ENST00000573936 ABCF2Q9UG63 623 aa13.47□□□□□ -0.25
CHD3-216ENST00000573936 ZNF646O15015 1829 aaPredicted RBP13.47□□□□□ -0.25
CHD3-216ENST00000573936 POLR2AP24928 1970 aaKnown RBP13.46□□□□□ -0.25
CHD3-216ENST00000573936 ADM5C9JUS6 153 aa13.46□□□□□ -0.25
CHD3-216ENST00000573936 HUNKP57058 714 aa13.46□□□□□ -0.25
CHD3-216ENST00000573936 HHIPL2Q6UWX4 724 aa13.46□□□□□ -0.25
CHD3-216ENST00000573936 KRT26Q7Z3Y9 468 aa13.46□□□□□ -0.25
CHD3-216ENST00000573936 SULF1Q8IWU6 871 aa13.46□□□□□ -0.25
CHD3-216ENST00000573936 GPATCH3Q96I76 525 aa13.46□□□□□ -0.25
CHD3-216ENST00000573936 ZBED3Q96IU2 234 aaPredicted RBP13.46□□□□□ -0.25
CHD3-216ENST00000573936 BCL11AQ9H165 835 aa13.46□□□□□ -0.25
CHD3-216ENST00000573936 GGA3Q9NZ52 723 aa13.46□□□□□ -0.25
CHD3-216ENST00000573936 COL1A1P02452 1464 aaPredicted RBP13.46□□□□□ -0.25
CHD3-216ENST00000573936 SPDYE2BA6NHP3 402 aa13.45□□□□□ -0.26
CHD3-216ENST00000573936 SMARCA5O60264 1052 aaPredicted RBP13.45□□□□□ -0.26
CHD3-216ENST00000573936 SPDYE6P0CI01 402 aa13.45□□□□□ -0.26
CHD3-216ENST00000573936 PRDX5P30044 214 aa13.45□□□□□ -0.26
CHD3-216ENST00000573936 GSTO1P78417 241 aa13.45□□□□□ -0.26
CHD3-216ENST00000573936 GRIK5Q16478 980 aa13.45□□□□□ -0.26
CHD3-216ENST00000573936 NBPF9Q3BBW0 867 aa13.45□□□□□ -0.26
CHD3-216ENST00000573936 ANKRD45Q5TZF3 282 aa13.45□□□□□ -0.26
CHD3-216ENST00000573936 ANGEL2Q5VTE6 544 aaKnown RBP13.45□□□□□ -0.26
CHD3-216ENST00000573936 DZIP1Q86YF9 867 aaKnown RBP13.45□□□□□ -0.26
CHD3-216ENST00000573936 C2orf69Q8N8R5 385 aa13.45□□□□□ -0.26
CHD3-216ENST00000573936 ZDHHC15Q96MV8 337 aa13.45□□□□□ -0.26
CHD3-216ENST00000573936 LDHCP07864 332 aa13.44□□□□□ -0.26
CHD3-216ENST00000573936 ZAP70P43403 619 aa13.44□□□□□ -0.26
CHD3-216ENST00000573936 TTF1Q15361 905 aaPredicted RBP13.44□□□□□ -0.26
CHD3-216ENST00000573936 APOBEC3FQ8IUX4 373 aaKnown RBP13.44□□□□□ -0.26
CHD3-216ENST00000573936 PRMT6Q96LA8 375 aaPredicted RBP13.44□□□□□ -0.26
CHD3-216ENST00000573936 SNRKQ9NRH2 765 aa13.44□□□□□ -0.26
CHD3-216ENST00000573936 LRP2BPQ9P2M1 347 aa13.44□□□□□ -0.26
CHD3-216ENST00000573936 ASTN2O75129 1339 aaPredicted RBP13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms