RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 UBE3BQ7Z3V4 1068 aa9.45□□□□□ -0.9
NUP88-205ENST00000572809 ANKRD18AQ8IVF6 992 aa9.45□□□□□ -0.9
NUP88-205ENST00000572809 CDC5LQ99459 802 aaKnown RBP9.45□□□□□ -0.9
NUP88-205ENST00000572809 EYA3Q99504 573 aa9.45□□□□□ -0.9
NUP88-205ENST00000572809 ANKIB1Q9P2G1 1089 aa9.45□□□□□ -0.9
NUP88-205ENST00000572809 RBM27Q9P2N5 1060 aaKnown RBP9.45□□□□□ -0.9
NUP88-205ENST00000572809 POLLQ9UGP5 575 aa9.45□□□□□ -0.9
NUP88-205ENST00000572809 COL4A5P29400 1685 aa9.45□□□□□ -0.9
NUP88-205ENST00000572809 SCN4AP35499 1836 aa9.45□□□□□ -0.9
NUP88-205ENST00000572809 RAD17O75943 681 aa9.44□□□□□ -0.9
NUP88-205ENST00000572809 SLFN5Q08AF3 891 aa9.44□□□□□ -0.9
NUP88-205ENST00000572809 BEND3Q5T5X7 828 aa9.44□□□□□ -0.9
NUP88-205ENST00000572809 TBC1D16Q8TBP0 767 aa9.44□□□□□ -0.9
NUP88-205ENST00000572809 PLA2G12BQ9BX93 195 aa9.44□□□□□ -0.9
NUP88-205ENST00000572809 ZC3H12CQ9C0D7 883 aaKnown RBP9.44□□□□□ -0.9
NUP88-205ENST00000572809 GREM2Q9H772 168 aa9.44□□□□□ -0.9
NUP88-205ENST00000572809 PODXL2Q9NZ53 605 aa9.44□□□□□ -0.9
NUP88-205ENST00000572809 CACNA1FO60840 1977 aa9.43□□□□□ -0.9
NUP88-205ENST00000572809 YDJCA8MPS7 323 aa9.43□□□□□ -0.9
NUP88-205ENST00000572809 OATP04181 439 aa9.43□□□□□ -0.9
NUP88-205ENST00000572809 CSF1RP07333 972 aa9.43□□□□□ -0.9
NUP88-205ENST00000572809 SCNN1DP51172 638 aa9.43□□□□□ -0.9
NUP88-205ENST00000572809 SPRYD7Q5W111 196 aa9.43□□□□□ -0.9
NUP88-205ENST00000572809 USP50Q70EL3 339 aaPredicted RBP9.43□□□□□ -0.9
NUP88-205ENST00000572809 CNTROBQ8N137 903 aa9.43□□□□□ -0.9
NUP88-205ENST00000572809 KLRG1Q96E93 195 aa9.43□□□□□ -0.9
NUP88-205ENST00000572809 BCL2L13Q9BXK5 485 aa9.43□□□□□ -0.9
NUP88-205ENST00000572809 DBNDD1Q9H9R9 158 aa9.43□□□□□ -0.9
NUP88-205ENST00000572809 BSDC1Q9NW68 430 aaPredicted RBP9.43□□□□□ -0.9
NUP88-205ENST00000572809 GPRC5DQ9NZD1 345 aa9.43□□□□□ -0.9
NUP88-205ENST00000572809 GGA1Q9UJY5 639 aa9.43□□□□□ -0.9
NUP88-205ENST00000572809 PCDHB3Q9Y5E6 796 aa9.43□□□□□ -0.9
NUP88-205ENST00000572809 ATP2B4P23634 1241 aa9.42□□□□□ -0.9
NUP88-205ENST00000572809 CLCN1P35523 988 aa9.42□□□□□ -0.9
NUP88-205ENST00000572809 SLC4A3P48751 1232 aa9.42□□□□□ -0.9
NUP88-205ENST00000572809 GMPSP49915 693 aaPredicted RBP9.42□□□□□ -0.9
NUP88-205ENST00000572809 CASP7P55210 303 aa9.42□□□□□ -0.9
NUP88-205ENST00000572809 MAP1SQ66K74 1059 aaPredicted RBP9.42□□□□□ -0.9
NUP88-205ENST00000572809 PADI6Q6TGC4 694 aa9.42□□□□□ -0.9
NUP88-205ENST00000572809 SLC4A10Q6U841 1118 aa9.42□□□□□ -0.9
NUP88-205ENST00000572809 ZNF598Q86UK7 904 aaKnown RBP9.42□□□□□ -0.9
NUP88-205ENST00000572809 GPR101Q96P66 508 aaPredicted RBP9.42□□□□□ -0.9
NUP88-205ENST00000572809 GOPCQ9HD26 462 aa9.42□□□□□ -0.9
NUP88-205ENST00000572809 ADARB2Q9NS39 739 aaKnown RBP9.42□□□□□ -0.9
NUP88-205ENST00000572809 MINPP1Q9UNW1 487 aa9.42□□□□□ -0.9
NUP88-205ENST00000572809 COL4A1P02462 1669 aa9.42□□□□□ -0.9
NUP88-205ENST00000572809 XDHP47989 1333 aa9.41□□□□□ -0.9
NUP88-205ENST00000572809 PASKQ96RG2 1323 aa9.41□□□□□ -0.9
NUP88-205ENST00000572809 H7C1D1 291 aa9.41□□□□□ -0.9
NUP88-205ENST00000572809 ECE2O60344 883 aa9.41□□□□□ -0.9
NUP88-205ENST00000572809 UFL1O94874 794 aa9.41□□□□□ -0.9
NUP88-205ENST00000572809 ITGA6P23229 1130 aa9.41□□□□□ -0.9
NUP88-205ENST00000572809 IGHMBP2P38935 993 aaKnown RBP9.41□□□□□ -0.9
NUP88-205ENST00000572809 BLOC1S3Q6QNY0 202 aa9.41□□□□□ -0.9
NUP88-205ENST00000572809 TRMT2AQ8IZ69 625 aaKnown RBP9.41□□□□□ -0.9
NUP88-205ENST00000572809 SRCIN1Q9C0H9 1055 aa9.41□□□□□ -0.9
NUP88-205ENST00000572809 KCNQ5Q9NR82 932 aa9.41□□□□□ -0.9
NUP88-205ENST00000572809 C9orf78Q9NZ63 289 aaPredicted RBP9.41□□□□□ -0.9
NUP88-205ENST00000572809 CNOT7Q9UIV1 285 aaKnown RBP9.41□□□□□ -0.9
NUP88-205ENST00000572809 RTL9Q8NET4 1388 aa9.4□□□□□ -0.9
NUP88-205ENST00000572809 LRRC37AA6NMS7 1700 aa9.4□□□□□ -0.9
NUP88-205ENST00000572809 ANKRD18BA2A2Z9 1011 aa9.4□□□□□ -0.9
NUP88-205ENST00000572809 FAM187AA6NFU0 413 aa9.4□□□□□ -0.9
NUP88-205ENST00000572809 GRM8O00222 908 aa9.4□□□□□ -0.9
NUP88-205ENST00000572809 PSMD14O00487 310 aa9.4□□□□□ -0.9
NUP88-205ENST00000572809 ALDH1L1O75891 902 aa9.4□□□□□ -0.9
NUP88-205ENST00000572809 PRR20EP86478 221 aa9.4□□□□□ -0.9
NUP88-205ENST00000572809 PRR20CP86479 221 aa9.4□□□□□ -0.9
NUP88-205ENST00000572809 PRR20DP86480 221 aa9.4□□□□□ -0.9
NUP88-205ENST00000572809 PRR20BP86481 221 aa9.4□□□□□ -0.9
NUP88-205ENST00000572809 PRR20AP86496 221 aa9.4□□□□□ -0.9
NUP88-205ENST00000572809 FOXO4P98177 505 aa9.4□□□□□ -0.9
NUP88-205ENST00000572809 DIEXFQ68CQ4 756 aaKnown RBP9.4□□□□□ -0.9
NUP88-205ENST00000572809 TTC13Q8NBP0 860 aa9.4□□□□□ -0.9
NUP88-205ENST00000572809 DPF2Q92785 391 aa9.4□□□□□ -0.9
NUP88-205ENST00000572809 MPHOSPH8Q99549 860 aa9.4□□□□□ -0.9
NUP88-205ENST00000572809 GPCPD1Q9NPB8 672 aa9.4□□□□□ -0.9
NUP88-205ENST00000572809 DUOX1Q9NRD9 1551 aa9.4□□□□□ -0.9
NUP88-205ENST00000572809 WTIPA6NIX2 430 aaPredicted RBP9.39□□□□□ -0.91
NUP88-205ENST00000572809 TMEM88BA6NKF7 163 aa9.39□□□□□ -0.91
NUP88-205ENST00000572809 VIL1P09327 827 aaKnown RBP9.39□□□□□ -0.91
NUP88-205ENST00000572809 CCT4P50991 539 aaKnown RBP9.39□□□□□ -0.91
NUP88-205ENST00000572809 FAM161AQ3B820 660 aa9.39□□□□□ -0.91
NUP88-205ENST00000572809 ALDH1L2Q3SY69 923 aa9.39□□□□□ -0.91
NUP88-205ENST00000572809 LMBR1LQ6UX01 489 aa9.39□□□□□ -0.91
NUP88-205ENST00000572809 PODNQ7Z5L7 613 aa9.39□□□□□ -0.91
NUP88-205ENST00000572809 JMYQ8N9B5 988 aa9.39□□□□□ -0.91
NUP88-205ENST00000572809 SSH1Q8WYL5 1049 aa9.39□□□□□ -0.91
NUP88-205ENST00000572809 PRR14Q9BWN1 585 aa9.39□□□□□ -0.91
NUP88-205ENST00000572809 ANKRD2Q9GZV1 360 aa9.39□□□□□ -0.91
NUP88-205ENST00000572809 LEMD3Q9Y2U8 911 aa9.39□□□□□ -0.91
NUP88-205ENST00000572809 CHMP3Q9Y3E7 222 aa9.39□□□□□ -0.91
NUP88-205ENST00000572809 PTPRCP08575 1304 aa9.38□□□□□ -0.91
NUP88-205ENST00000572809 TNFRSF10AO00220 468 aa9.38□□□□□ -0.91
NUP88-205ENST00000572809 TLL1O43897 1013 aa9.38□□□□□ -0.91
NUP88-205ENST00000572809 CT47B1P0C2W7 299 aaPredicted RBP9.38□□□□□ -0.91
NUP88-205ENST00000572809 RPS12P25398 132 aaKnown RBP9.38□□□□□ -0.91
NUP88-205ENST00000572809 HIRAP54198 1017 aaPredicted RBP9.38□□□□□ -0.91
NUP88-205ENST00000572809 IFIT5Q13325 482 aaKnown RBP9.38□□□□□ -0.91
NUP88-205ENST00000572809 CCDC57Q2TAC2 916 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms