RNA–Protein interactions for RNA: ENST00000571545.1

CIITA-207, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 3

Gene CIITA, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-207ENST00000571545 CSRNP1Q96S65 589 aa12.15□□□□□ -0.46
CIITA-207ENST00000571545 ZIC5Q96T25 663 aa12.15□□□□□ -0.46
CIITA-207ENST00000571545 RNF186Q9NXI6 227 aa12.15□□□□□ -0.46
CIITA-207ENST00000571545 TMOD2Q9NZR1 351 aa12.15□□□□□ -0.46
CIITA-207ENST00000571545 ANGEL1Q9UNK9 670 aaKnown RBP12.15□□□□□ -0.46
CIITA-207ENST00000571545 CLRN2A0PK11 232 aa12.14□□□□□ -0.47
CIITA-207ENST00000571545 RARSP54136 660 aaKnown RBP12.14□□□□□ -0.47
CIITA-207ENST00000571545 INHBEP58166 350 aa12.14□□□□□ -0.47
CIITA-207ENST00000571545 SPDYE2Q495Y8 402 aa12.14□□□□□ -0.47
CIITA-207ENST00000571545 NOM1Q5C9Z4 860 aaKnown RBP12.14□□□□□ -0.47
CIITA-207ENST00000571545 LDLRAD1Q5T700 205 aa12.14□□□□□ -0.47
CIITA-207ENST00000571545 WDR66Q8TBY9 1149 aa12.14□□□□□ -0.47
CIITA-207ENST00000571545 TEKT1Q969V4 418 aa12.14□□□□□ -0.47
CIITA-207ENST00000571545 MRIQ9BWK5 157 aa12.14□□□□□ -0.47
CIITA-207ENST00000571545 GNL3LQ9NVN8 582 aaKnown RBP12.14□□□□□ -0.47
CIITA-207ENST00000571545 SCAF8Q9UPN6 1271 aaKnown RBP12.14□□□□□ -0.47
CIITA-207ENST00000571545 JAG2Q9Y219 1238 aa12.14□□□□□ -0.47
CIITA-207ENST00000571545 MANSC4A6NHS7 340 aaPredicted RBP12.13□□□□□ -0.47
CIITA-207ENST00000571545 CRKP46108 304 aa12.13□□□□□ -0.47
CIITA-207ENST00000571545 TM4SF4P48230 202 aa12.13□□□□□ -0.47
CIITA-207ENST00000571545 CHAF1AQ13111 956 aaPredicted RBP12.13□□□□□ -0.47
CIITA-207ENST00000571545 DGKZQ13574 1117 aa12.13□□□□□ -0.47
CIITA-207ENST00000571545 MOB2Q70IA6 237 aa12.13□□□□□ -0.47
CIITA-207ENST00000571545 DZIP1LQ8IYY4 767 aaKnown RBP12.13□□□□□ -0.47
CIITA-207ENST00000571545 PRMT6Q96LA8 375 aaPredicted RBP12.13□□□□□ -0.47
CIITA-207ENST00000571545 MCOLN1Q9GZU1 580 aa12.13□□□□□ -0.47
CIITA-207ENST00000571545 CEP126Q9P2H0 1117 aa12.13□□□□□ -0.47
CIITA-207ENST00000571545 SEMA3EO15041 775 aa12.12□□□□□ -0.47
CIITA-207ENST00000571545 FGFR2P21802 821 aa12.12□□□□□ -0.47
CIITA-207ENST00000571545 IL15P40933 162 aaPredicted RBP12.12□□□□□ -0.47
CIITA-207ENST00000571545 RFX5P48382 616 aaPredicted RBP12.12□□□□□ -0.47
CIITA-207ENST00000571545 PTPN12Q05209 780 aaKnown RBP12.12□□□□□ -0.47
CIITA-207ENST00000571545 RASA3Q14644 834 aa12.12□□□□□ -0.47
CIITA-207ENST00000571545 PKN2Q16513 984 aaKnown RBP12.12□□□□□ -0.47
CIITA-207ENST00000571545 SPRYD7Q5W111 196 aa12.12□□□□□ -0.47
CIITA-207ENST00000571545 INTS3Q68E01 1043 aaKnown RBP12.12□□□□□ -0.47
CIITA-207ENST00000571545 OTUD7BQ6GQQ9 843 aa12.12□□□□□ -0.47
CIITA-207ENST00000571545 ANKRD13AQ8IZ07 590 aa12.12□□□□□ -0.47
CIITA-207ENST00000571545 KLHDC4Q8TBB5 520 aa12.12□□□□□ -0.47
CIITA-207ENST00000571545 SLC10A4Q96EP9 437 aa12.12□□□□□ -0.47
CIITA-207ENST00000571545 CFHR5Q9BXR6 569 aa12.12□□□□□ -0.47
CIITA-207ENST00000571545 ZNF70Q9UC06 446 aaPredicted RBP12.12□□□□□ -0.47
CIITA-207ENST00000571545 SSC5DA1L4H1 1573 aa12.12□□□□□ -0.47
CIITA-207ENST00000571545 RPAP1Q9BWH6 1393 aaPredicted RBP12.11□□□□□ -0.47
CIITA-207ENST00000571545 PRKG1Q13976 671 aa12.11□□□□□ -0.47
CIITA-207ENST00000571545 ATP2B3Q16720 1220 aa12.11□□□□□ -0.47
CIITA-207ENST00000571545 FKBP1CQ5VVH2 108 aa12.11□□□□□ -0.47
CIITA-207ENST00000571545 CTU1Q7Z7A3 348 aaKnown RBP12.11□□□□□ -0.47
CIITA-207ENST00000571545 ZGPATQ8N5A5 531 aaKnown RBP12.11□□□□□ -0.47
CIITA-207ENST00000571545 ZDHHC15Q96MV8 337 aa12.11□□□□□ -0.47
CIITA-207ENST00000571545 LRRFIP2Q9Y608 721 aaKnown RBP12.11□□□□□ -0.47
CIITA-207ENST00000571545 OTOFQ9HC10 1997 aa12.1□□□□□ -0.47
CIITA-207ENST00000571545 CCDC85CA6NKD9 419 aa12.1□□□□□ -0.47
CIITA-207ENST00000571545 BCAMP50895 628 aa12.1□□□□□ -0.47
CIITA-207ENST00000571545 HHIPL2Q6UWX4 724 aa12.1□□□□□ -0.47
CIITA-207ENST00000571545 ATG9AQ7Z3C6 839 aa12.1□□□□□ -0.47
CIITA-207ENST00000571545 FAM83AQ86UY5 434 aa12.1□□□□□ -0.47
CIITA-207ENST00000571545 TDRD3Q9H7E2 651 aaKnown RBP12.1□□□□□ -0.47
CIITA-207ENST00000571545 COPRSQ9NQ92 184 aa12.1□□□□□ -0.47
CIITA-207ENST00000571545 IQSEC3Q9UPP2 1182 aaPredicted RBP12.1□□□□□ -0.47
CIITA-207ENST00000571545 AKAP2Q9Y2D5 859 aa12.1□□□□□ -0.47
CIITA-207ENST00000571545 MTX1Q13505 466 aa12.09□□□□□ -0.47
CIITA-207ENST00000571545 NBPF12Q5TAG4 269 aaPredicted RBP12.09□□□□□ -0.47
CIITA-207ENST00000571545 ATF7IPQ6VMQ6 1270 aa12.09□□□□□ -0.47
CIITA-207ENST00000571545 WNK4Q96J92 1243 aa12.09□□□□□ -0.47
CIITA-207ENST00000571545 SIL1Q9H173 461 aa12.09□□□□□ -0.47
CIITA-207ENST00000571545 DENND2AQ9ULE3 1009 aa12.09□□□□□ -0.47
CIITA-207ENST00000571545 PCDHAC2Q9Y5I4 1007 aa12.09□□□□□ -0.47
CIITA-207ENST00000571545 CSADQ9Y600 493 aa12.09□□□□□ -0.47
CIITA-207ENST00000571545 PDS5AQ29RF7 1337 aaKnown RBP12.09□□□□□ -0.47
CIITA-207ENST00000571545 SALL1Q9NSC2 1324 aa12.09□□□□□ -0.47
CIITA-207ENST00000571545 TCP10L2B9ZVM9 353 aa12.08□□□□□ -0.48
CIITA-207ENST00000571545 MKRN3Q13064 507 aaKnown RBP12.08□□□□□ -0.48
CIITA-207ENST00000571545 DCAF15Q66K64 600 aa12.08□□□□□ -0.48
CIITA-207ENST00000571545 SLF2Q8IX21 1173 aa12.08□□□□□ -0.48
CIITA-207ENST00000571545 MEIS3Q99687 375 aa12.08□□□□□ -0.48
CIITA-207ENST00000571545 SRGAP3O43295 1099 aa12.07□□□□□ -0.48
CIITA-207ENST00000571545 WDHD1O75717 1129 aaPredicted RBP12.07□□□□□ -0.48
CIITA-207ENST00000571545 GNAI2P04899 355 aa12.07□□□□□ -0.48
CIITA-207ENST00000571545 LDHBP07195 334 aaKnown RBP12.07□□□□□ -0.48
CIITA-207ENST00000571545 TRIM27P14373 513 aa12.07□□□□□ -0.48
CIITA-207ENST00000571545 MVPQ14764 893 aaKnown RBP12.07□□□□□ -0.48
CIITA-207ENST00000571545 ZKSCAN2Q63HK3 967 aa12.07□□□□□ -0.48
CIITA-207ENST00000571545 DIEXFQ68CQ4 756 aaKnown RBP12.07□□□□□ -0.48
CIITA-207ENST00000571545 IFNL1Q8IU54 200 aa12.07□□□□□ -0.48
CIITA-207ENST00000571545 FRAT1Q92837 279 aaPredicted RBP12.07□□□□□ -0.48
CIITA-207ENST00000571545 TEPSINQ96N21 525 aa12.07□□□□□ -0.48
CIITA-207ENST00000571545 GPR25O00155 361 aa12.06□□□□□ -0.48
CIITA-207ENST00000571545 FKTNO75072 461 aa12.06□□□□□ -0.48
CIITA-207ENST00000571545 USP2O75604 605 aaPredicted RBP12.06□□□□□ -0.48
CIITA-207ENST00000571545 TBC1D8O95759 1140 aa12.06□□□□□ -0.48
CIITA-207ENST00000571545 HNRNPUQ00839 825 aaKnown RBP eCLIP12.06□□□□□ -0.48
CIITA-207ENST00000571545 SPTY2D1Q68D10 685 aaPredicted RBP12.06□□□□□ -0.48
CIITA-207ENST00000571545 ZNF296Q8WUU4 475 aaPredicted RBP12.06□□□□□ -0.48
CIITA-207ENST00000571545 TMEM39BQ9GZU3 492 aa12.06□□□□□ -0.48
CIITA-207ENST00000571545 RGS19P49795 217 aa12.05□□□□□ -0.48
CIITA-207ENST00000571545 GTF2A2P52657 109 aa12.05□□□□□ -0.48
CIITA-207ENST00000571545 MAP3K9P80192 1104 aa12.05□□□□□ -0.48
CIITA-207ENST00000571545 MLLT1Q03111 559 aaPredicted RBP12.05□□□□□ -0.48
CIITA-207ENST00000571545 APOBEC3HQ6NTF7 200 aaKnown RBP12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms