RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 MMP14P50281 582 aa25.28■■□□□ 1.64
VPS53-210ENST00000571456 ZNF296Q8WUU4 475 aaPredicted RBP25.28■■□□□ 1.64
VPS53-210ENST00000571456 LRRCC1Q9C099 1032 aa25.28■■□□□ 1.64
VPS53-210ENST00000571456 PSMD14O00487 310 aa25.27■■□□□ 1.64
VPS53-210ENST00000571456 KLRK1P26718 216 aa25.27■■□□□ 1.64
VPS53-210ENST00000571456 IRX6P78412 446 aaPredicted RBP25.27■■□□□ 1.64
VPS53-210ENST00000571456 STRIP1Q5VSL9 837 aa25.27■■□□□ 1.64
VPS53-210ENST00000571456 RASAL3Q86YV0 1011 aa25.27■■□□□ 1.64
VPS53-210ENST00000571456 MYO3BQ8WXR4 1341 aa25.27■■□□□ 1.64
VPS53-210ENST00000571456 MYH13Q9UKX3 1938 aa25.27■■□□□ 1.64
VPS53-210ENST00000571456 SCN9AQ15858 1988 aa25.27■■□□□ 1.64
VPS53-210ENST00000571456 USP17L3A6NCW0 530 aa25.26■■□□□ 1.63
VPS53-210ENST00000571456 USP17L4A6NCW7 530 aa25.26■■□□□ 1.63
VPS53-210ENST00000571456 RPS12P25398 132 aaKnown RBP25.26■■□□□ 1.63
VPS53-210ENST00000571456 RBM26Q5T8P6 1007 aaKnown RBP25.26■■□□□ 1.63
VPS53-210ENST00000571456 ERICH6BQ5W0A0 696 aa25.26■■□□□ 1.63
VPS53-210ENST00000571456 USP17L1Q7RTZ2 530 aa25.26■■□□□ 1.63
VPS53-210ENST00000571456 TDRD7Q8NHU6 1098 aaKnown RBP25.26■■□□□ 1.63
VPS53-210ENST00000571456 NEUROD6Q96NK8 337 aa25.26■■□□□ 1.63
VPS53-210ENST00000571456 GYG1P46976 350 aa25.25■■□□□ 1.63
VPS53-210ENST00000571456 FKBP1AP62942 108 aaKnown RBP25.25■■□□□ 1.63
VPS53-210ENST00000571456 GORABQ5T7V8 394 aa25.25■■□□□ 1.63
VPS53-210ENST00000571456 FBXO46Q6PJ61 603 aaPredicted RBP25.25■■□□□ 1.63
VPS53-210ENST00000571456 SULF1Q8IWU6 871 aa25.25■■□□□ 1.63
VPS53-210ENST00000571456 XAGE2Q96GT9 111 aa25.25■■□□□ 1.63
VPS53-210ENST00000571456 TIMM10P62072 90 aa25.24■■□□□ 1.63
VPS53-210ENST00000571456 ZBTB47Q9UFB7 747 aaPredicted RBP25.24■■□□□ 1.63
VPS53-210ENST00000571456 KIAA0100Q14667 2235 aaKnown RBP25.23■■□□□ 1.63
VPS53-210ENST00000571456 PDS5AQ29RF7 1337 aaKnown RBP25.23■■□□□ 1.63
VPS53-210ENST00000571456 FAM205AQ6ZU69 1335 aa25.23■■□□□ 1.63
VPS53-210ENST00000571456 TBC1D8O95759 1140 aa25.23■■□□□ 1.63
VPS53-210ENST00000571456 VIL1P09327 827 aaKnown RBP25.23■■□□□ 1.63
VPS53-210ENST00000571456 CCDC158Q5M9N0 1113 aa25.23■■□□□ 1.63
VPS53-210ENST00000571456 AGBL3Q8NEM8 1001 aa25.23■■□□□ 1.63
VPS53-210ENST00000571456 CDCA5Q96FF9 252 aa25.23■■□□□ 1.63
VPS53-210ENST00000571456 FRAT2O75474 233 aaPredicted RBP25.22■■□□□ 1.63
VPS53-210ENST00000571456 UQCRFS1P1P0C7P4 283 aa25.22■■□□□ 1.63
VPS53-210ENST00000571456 BCAMP50895 628 aa25.22■■□□□ 1.63
VPS53-210ENST00000571456 TTLL5Q6EMB2 1281 aa25.22■■□□□ 1.63
VPS53-210ENST00000571456 TBC1D22AQ8WUA7 517 aa25.22■■□□□ 1.63
VPS53-210ENST00000571456 ZNF512BQ96KM6 892 aaPredicted RBP25.22■■□□□ 1.63
VPS53-210ENST00000571456 GGA3Q9NZ52 723 aa25.22■■□□□ 1.63
VPS53-210ENST00000571456 KIF4BQ2VIQ3 1234 aa25.21■■□□□ 1.63
VPS53-210ENST00000571456 CCDC102BQ68D86 513 aa25.21■■□□□ 1.63
VPS53-210ENST00000571456 EAF2Q96CJ1 260 aaPredicted RBP25.21■■□□□ 1.63
VPS53-210ENST00000571456 DENND2AQ9ULE3 1009 aa25.21■■□□□ 1.63
VPS53-210ENST00000571456 IFIT2P09913 472 aaKnown RBP25.2■■□□□ 1.62
VPS53-210ENST00000571456 NOM1Q5C9Z4 860 aaKnown RBP25.2■■□□□ 1.62
VPS53-210ENST00000571456 RSBN1LQ6PCB5 846 aaPredicted RBP25.2■■□□□ 1.62
VPS53-210ENST00000571456 AACSQ86V21 672 aa25.2■■□□□ 1.62
VPS53-210ENST00000571456 SMC5Q8IY18 1101 aa25.2■■□□□ 1.62
VPS53-210ENST00000571456 HTTP42858 3142 aa25.2■■□□□ 1.62
VPS53-210ENST00000571456 ZNF646O15015 1829 aaPredicted RBP25.19■■□□□ 1.62
VPS53-210ENST00000571456 PAPPA2Q9BXP8 1791 aa25.19■■□□□ 1.62
VPS53-210ENST00000571456 IGSF3O75054 1194 aa25.19■■□□□ 1.62
VPS53-210ENST00000571456 FXR1P51114 621 aaKnown RBP eCLIP25.19■■□□□ 1.62
VPS53-210ENST00000571456 FKBP1BP68106 108 aa25.19■■□□□ 1.62
VPS53-210ENST00000571456 DACT2Q5SW24 774 aa25.19■■□□□ 1.62
VPS53-210ENST00000571456 WDR66Q8TBY9 1149 aa25.19■■□□□ 1.62
VPS53-210ENST00000571456 IL1RAPL2Q9NP60 686 aa25.19■■□□□ 1.62
VPS53-210ENST00000571456 SUGT1Q9Y2Z0 365 aa25.19■■□□□ 1.62
VPS53-210ENST00000571456 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP25.19■■□□□ 1.62
VPS53-210ENST00000571456 CENPFP49454 3210 aa25.18■■□□□ 1.62
VPS53-210ENST00000571456 GPR25O00155 361 aa25.18■■□□□ 1.62
VPS53-210ENST00000571456 APBB1O00213 710 aa25.18■■□□□ 1.62
VPS53-210ENST00000571456 ARID4AP29374 1257 aaPredicted RBP25.18■■□□□ 1.62
VPS53-210ENST00000571456 ADORA1P30542 326 aa25.18■■□□□ 1.62
VPS53-210ENST00000571456 GTF2IP78347 998 aa25.18■■□□□ 1.62
VPS53-210ENST00000571456 DBNLQ9UJU6 430 aaKnown RBP25.18■■□□□ 1.62
VPS53-210ENST00000571456 CEP290O15078 2479 aa25.18■■□□□ 1.62
VPS53-210ENST00000571456 PHKA1P46020 1223 aa25.17■■□□□ 1.62
VPS53-210ENST00000571456 ZGPATQ8N5A5 531 aaKnown RBP25.17■■□□□ 1.62
VPS53-210ENST00000571456 DBNDD2Q9BQY9 259 aa25.17■■□□□ 1.62
VPS53-210ENST00000571456 ASTN2O75129 1339 aaPredicted RBP25.16■■□□□ 1.62
VPS53-210ENST00000571456 TTC39AQ5SRH9 613 aa25.16■■□□□ 1.62
VPS53-210ENST00000571456 KCNQ5Q9NR82 932 aa25.16■■□□□ 1.62
VPS53-210ENST00000571456 SALL1Q9NSC2 1324 aa25.15■■□□□ 1.62
VPS53-210ENST00000571456 PPIL4Q8WUA2 492 aaKnown RBP eCLIP25.15■■□□□ 1.62
VPS53-210ENST00000571456 GPATCH3Q96I76 525 aa25.15■■□□□ 1.62
VPS53-210ENST00000571456 CCDC8Q9H0W5 538 aaPredicted RBP25.15■■□□□ 1.62
VPS53-210ENST00000571456 TRIOBPQ9H2D6 2365 aa25.14■■□□□ 1.62
VPS53-210ENST00000571456 OGFOD1Q8N543 542 aa25.14■■□□□ 1.62
VPS53-210ENST00000571456 FBXW7Q969H0 707 aa25.14■■□□□ 1.62
VPS53-210ENST00000571456 GMLQ99445 158 aa25.14■■□□□ 1.62
VPS53-210ENST00000571456 IGHDP01880 384 aa25.13■■□□□ 1.61
VPS53-210ENST00000571456 TM4SF4P48230 202 aa25.13■■□□□ 1.61
VPS53-210ENST00000571456 MFSD14BQ5SR56 506 aa25.13■■□□□ 1.61
VPS53-210ENST00000571456 MAST3O60307 1309 aa25.12■■□□□ 1.61
VPS53-210ENST00000571456 FKTNO75072 461 aa25.12■■□□□ 1.61
VPS53-210ENST00000571456 USP17L8P0C7I0 530 aa25.12■■□□□ 1.61
VPS53-210ENST00000571456 RASGRF1Q13972 1273 aa25.12■■□□□ 1.61
VPS53-210ENST00000571456 ANKRD45Q5TZF3 282 aa25.12■■□□□ 1.61
VPS53-210ENST00000571456 ANGEL2Q5VTE6 544 aaKnown RBP25.12■■□□□ 1.61
VPS53-210ENST00000571456 SPTY2D1Q68D10 685 aaPredicted RBP25.11■■□□□ 1.61
VPS53-210ENST00000571456 SPATA5Q8NB90 893 aa25.11■■□□□ 1.61
VPS53-210ENST00000571456 IQSEC3Q9UPP2 1182 aaPredicted RBP25.11■■□□□ 1.61
VPS53-210ENST00000571456 RBBP6Q7Z6E9 1792 aaKnown RBP25.1■■□□□ 1.61
VPS53-210ENST00000571456 ZNF280AP59817 542 aaPredicted RBP25.1■■□□□ 1.61
VPS53-210ENST00000571456 CHAF1AQ13111 956 aaPredicted RBP25.1■■□□□ 1.61
VPS53-210ENST00000571456 SCARF1Q14162 830 aa25.1■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms