RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 TMX4Q9H1E5 349 aaPredicted RBP7.86□□□□□ -1.15
VPS53-209ENST00000570771 GPR108Q9NPR9 543 aa7.86□□□□□ -1.15
VPS53-209ENST00000570771 PIH1D3Q9NQM4 214 aaKnown RBP7.86□□□□□ -1.15
VPS53-209ENST00000570771 HMG20BQ9P0W2 317 aa7.86□□□□□ -1.15
VPS53-209ENST00000570771 ERC2O15083 957 aa7.85□□□□□ -1.15
VPS53-209ENST00000570771 GRIN3BO60391 1043 aa7.85□□□□□ -1.15
VPS53-209ENST00000570771 MAP4K4O95819 1239 aaPredicted RBP7.85□□□□□ -1.15
VPS53-209ENST00000570771 SLC5A1P13866 664 aa7.85□□□□□ -1.15
VPS53-209ENST00000570771 GSPT1P15170 499 aaKnown RBP7.85□□□□□ -1.15
VPS53-209ENST00000570771 ARID4AP29374 1257 aaPredicted RBP7.85□□□□□ -1.15
VPS53-209ENST00000570771 PRDX5P30044 214 aa7.85□□□□□ -1.15
VPS53-209ENST00000570771 ZAP70P43403 619 aa7.85□□□□□ -1.15
VPS53-209ENST00000570771 KCNJ4P48050 445 aa7.85□□□□□ -1.15
VPS53-209ENST00000570771 RGS3P49796 1198 aa7.85□□□□□ -1.15
VPS53-209ENST00000570771 GTF2IP78347 998 aa7.85□□□□□ -1.15
VPS53-209ENST00000570771 CHAF1AQ13111 956 aaPredicted RBP7.85□□□□□ -1.15
VPS53-209ENST00000570771 SOGA3Q5TF21 947 aa7.85□□□□□ -1.15
VPS53-209ENST00000570771 DLK2Q6UY11 383 aa7.85□□□□□ -1.15
VPS53-209ENST00000570771 TTC41PQ6P2S7 1318 aa7.84□□□□□ -1.15
VPS53-209ENST00000570771 AKAP11Q9UKA4 1901 aa7.84□□□□□ -1.15
VPS53-209ENST00000570771 CCDC88AQ3V6T2 1871 aa7.84□□□□□ -1.15
VPS53-209ENST00000570771 CYP2E1P05181 493 aaPredicted RBP7.84□□□□□ -1.15
VPS53-209ENST00000570771 IFIT1P09914 478 aaKnown RBP7.84□□□□□ -1.15
VPS53-209ENST00000570771 MX1P20591 662 aa7.84□□□□□ -1.15
VPS53-209ENST00000570771 HIBADHP31937 336 aaKnown RBP7.84□□□□□ -1.15
VPS53-209ENST00000570771 GMPSP49915 693 aaPredicted RBP7.84□□□□□ -1.15
VPS53-209ENST00000570771 ADGRA1Q86SQ6 560 aa7.84□□□□□ -1.15
VPS53-209ENST00000570771 PLEKHM2Q8IWE5 1019 aa7.84□□□□□ -1.15
VPS53-209ENST00000570771 NIM1KQ8IY84 436 aa7.84□□□□□ -1.15
VPS53-209ENST00000570771 TRPM4Q8TD43 1214 aa7.84□□□□□ -1.15
VPS53-209ENST00000570771 ZNF526Q8TF50 670 aaPredicted RBP7.84□□□□□ -1.15
VPS53-209ENST00000570771 COA1Q9GZY4 146 aa7.84□□□□□ -1.15
VPS53-209ENST00000570771 NMRK2Q9NPI5 230 aa7.84□□□□□ -1.15
VPS53-209ENST00000570771 ZNRF3Q9ULT6 936 aa7.84□□□□□ -1.15
VPS53-209ENST00000570771 SCAF8Q9UPN6 1271 aaKnown RBP7.84□□□□□ -1.15
VPS53-209ENST00000570771 DICER1Q9UPY3 1922 aaKnown RBP7.84□□□□□ -1.16
VPS53-209ENST00000570771 FAM205AQ6ZU69 1335 aa7.83□□□□□ -1.16
VPS53-209ENST00000570771 PSME4Q14997 1843 aa7.83□□□□□ -1.16
VPS53-209ENST00000570771 EIF5BO60841 1220 aaKnown RBP7.83□□□□□ -1.16
VPS53-209ENST00000570771 VIL1P09327 827 aaKnown RBP7.83□□□□□ -1.16
VPS53-209ENST00000570771 EPS15P42566 896 aa7.83□□□□□ -1.16
VPS53-209ENST00000570771 NUBP1P53384 320 aa7.83□□□□□ -1.16
VPS53-209ENST00000570771 HIRAP54198 1017 aaPredicted RBP7.83□□□□□ -1.16
VPS53-209ENST00000570771 PDE1AP54750 535 aa7.83□□□□□ -1.16
VPS53-209ENST00000570771 DIXDC1Q155Q3 683 aa7.83□□□□□ -1.16
VPS53-209ENST00000570771 GORABQ5T7V8 394 aa7.83□□□□□ -1.16
VPS53-209ENST00000570771 FBXW7Q969H0 707 aa7.83□□□□□ -1.16
VPS53-209ENST00000570771 EYA3Q99504 573 aa7.83□□□□□ -1.16
VPS53-209ENST00000570771 ZC3H12CQ9C0D7 883 aaKnown RBP7.83□□□□□ -1.16
VPS53-209ENST00000570771 IL25Q9H293 177 aa7.83□□□□□ -1.16
VPS53-209ENST00000570771 BOLA2Q9H3K6 86 aa7.83□□□□□ -1.16
VPS53-209ENST00000570771 OSBPL3Q9H4L5 887 aa7.83□□□□□ -1.16
VPS53-209ENST00000570771 STAP2Q9UGK3 403 aa7.83□□□□□ -1.16
VPS53-209ENST00000570771 GJA3Q9Y6H8 435 aa7.83□□□□□ -1.16
VPS53-209ENST00000570771 AK9Q5TCS8 1911 aa7.82□□□□□ -1.16
VPS53-209ENST00000570771 F8W031 263 aaPredicted RBP7.82□□□□□ -1.16
VPS53-209ENST00000570771 GLRX3O76003 335 aaKnown RBP7.82□□□□□ -1.16
VPS53-209ENST00000570771 FMR1Q06787 632 aaKnown RBP eCLIP7.82□□□□□ -1.16
VPS53-209ENST00000570771 GRIPAP1Q4V328 841 aa7.82□□□□□ -1.16
VPS53-209ENST00000570771 BMP2KLQ5H9B9 411 aa7.82□□□□□ -1.16
VPS53-209ENST00000570771 CCDC158Q5M9N0 1113 aa7.82□□□□□ -1.16
VPS53-209ENST00000570771 CIAPIN1Q6FI81 312 aa7.82□□□□□ -1.16
VPS53-209ENST00000570771 RSBN1LQ6PCB5 846 aaPredicted RBP7.82□□□□□ -1.16
VPS53-209ENST00000570771 ZNF804AQ7Z570 1209 aa7.82□□□□□ -1.16
VPS53-209ENST00000570771 KIAA0825Q8IV33 1275 aa7.82□□□□□ -1.16
VPS53-209ENST00000570771 SPATA5Q8NB90 893 aa7.82□□□□□ -1.16
VPS53-209ENST00000570771 SUPT20HQ8NEM7 779 aa7.82□□□□□ -1.16
VPS53-209ENST00000570771 ECHDC1Q9NTX5 307 aa7.82□□□□□ -1.16
VPS53-209ENST00000570771 WDR90Q96KV7 1748 aa7.81□□□□□ -1.16
VPS53-209ENST00000570771 USP17L3A6NCW0 530 aa7.81□□□□□ -1.16
VPS53-209ENST00000570771 USP17L4A6NCW7 530 aa7.81□□□□□ -1.16
VPS53-209ENST00000570771 SMIM22K7EJ46 135 aa7.81□□□□□ -1.16
VPS53-209ENST00000570771 GOLIM4O00461 696 aa7.81□□□□□ -1.16
VPS53-209ENST00000570771 UQCRFS1P1P0C7P4 283 aa7.81□□□□□ -1.16
VPS53-209ENST00000570771 SLURP2P0DP57 97 aa7.81□□□□□ -1.16
VPS53-209ENST00000570771 ATP5JP18859 108 aa7.81□□□□□ -1.16
VPS53-209ENST00000570771 MFSD14BQ5SR56 506 aa7.81□□□□□ -1.16
VPS53-209ENST00000570771 TTC39AQ5SRH9 613 aa7.81□□□□□ -1.16
VPS53-209ENST00000570771 USP17L1Q7RTZ2 530 aa7.81□□□□□ -1.16
VPS53-209ENST00000570771 SAMD7Q7Z3H4 446 aa7.81□□□□□ -1.16
VPS53-209ENST00000570771 PODNQ7Z5L7 613 aa7.81□□□□□ -1.16
VPS53-209ENST00000570771 MICALL2Q8IY33 904 aa7.81□□□□□ -1.16
VPS53-209ENST00000570771 ZBED3Q96IU2 234 aaPredicted RBP7.81□□□□□ -1.16
VPS53-209ENST00000570771 L3MBTL3Q96JM7 780 aaPredicted RBP7.81□□□□□ -1.16
VPS53-209ENST00000570771 ZNF512BQ96KM6 892 aaPredicted RBP7.81□□□□□ -1.16
VPS53-209ENST00000570771 DNAJC2Q99543 621 aaKnown RBP7.81□□□□□ -1.16
VPS53-209ENST00000570771 RFX7Q2KHR2 1363 aa7.81□□□□□ -1.16
VPS53-209ENST00000570771 MYO5AQ9Y4I1 1855 aaKnown RBP7.81□□□□□ -1.16
VPS53-209ENST00000570771 DOCK2Q92608 1830 aa7.8□□□□□ -1.16
VPS53-209ENST00000570771 TCRBV5S4A2TA0A5A2 114 aa7.8□□□□□ -1.16
VPS53-209ENST00000570771 GLTPD2A6NH11 291 aa7.8□□□□□ -1.16
VPS53-209ENST00000570771 FOXP2O15409 715 aa7.8□□□□□ -1.16
VPS53-209ENST00000570771 LRRFIP1Q32MZ4 808 aaKnown RBP7.8□□□□□ -1.16
VPS53-209ENST00000570771 TBC1D10BQ4KMP7 808 aaPredicted RBP7.8□□□□□ -1.16
VPS53-209ENST00000570771 CAVIN4Q5BKX8 364 aa7.8□□□□□ -1.16
VPS53-209ENST00000570771 TTC22Q5TAA0 569 aa7.8□□□□□ -1.16
VPS53-209ENST00000570771 STRIP1Q5VSL9 837 aa7.8□□□□□ -1.16
VPS53-209ENST00000570771 TTLL5Q6EMB2 1281 aa7.8□□□□□ -1.16
VPS53-209ENST00000570771 CASC1Q6TDU7 716 aa7.8□□□□□ -1.16
VPS53-209ENST00000570771 ZNF784Q8NCA9 323 aaPredicted RBP7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms