RNA–Protein interactions for RNA: ENST00000570023.1

VPS39-212, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 337 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-212ENST00000570023 COL19A1Q14993 1142 aa5.53□□□□□ -1.52
VPS39-212ENST00000570023 HGSNATQ68CP4 663 aa5.53□□□□□ -1.52
VPS39-212ENST00000570023 KIAA1211Q6ZU35 1233 aa5.53□□□□□ -1.52
VPS39-212ENST00000570023 DZIP1LQ8IYY4 767 aaKnown RBP5.53□□□□□ -1.52
VPS39-212ENST00000570023 FBF1Q8TES7 1133 aa5.53□□□□□ -1.52
VPS39-212ENST00000570023 SECISBP2LQ93073 1101 aaKnown RBP5.53□□□□□ -1.52
VPS39-212ENST00000570023 CLEC4MQ9H2X3 399 aaPredicted RBP5.53□□□□□ -1.52
VPS39-212ENST00000570023 ABCB6Q9NP58 842 aa5.53□□□□□ -1.52
VPS39-212ENST00000570023 TRAK1Q9UPV9 953 aa5.53□□□□□ -1.52
VPS39-212ENST00000570023 NISCHQ9Y2I1 1504 aa5.53□□□□□ -1.52
VPS39-212ENST00000570023 TMEM238LA0A1B0GVL6 79 aa5.52□□□□□ -1.53
VPS39-212ENST00000570023 DDX3YO15523 660 aaKnown RBP5.52□□□□□ -1.53
VPS39-212ENST00000570023 GADD45BO75293 160 aaPredicted RBP5.52□□□□□ -1.53
VPS39-212ENST00000570023 WISP1O95388 367 aa5.52□□□□□ -1.53
VPS39-212ENST00000570023 MCCP23508 829 aa5.52□□□□□ -1.53
VPS39-212ENST00000570023 ANP32AP39687 249 aaKnown RBP5.52□□□□□ -1.53
VPS39-212ENST00000570023 PCDH1Q08174 1060 aa5.52□□□□□ -1.53
VPS39-212ENST00000570023 GRM2Q14416 872 aa5.52□□□□□ -1.53
VPS39-212ENST00000570023 DUOXA2Q1HG44 320 aa5.52□□□□□ -1.53
VPS39-212ENST00000570023 RSPO4Q2I0M5 234 aaPredicted RBP5.52□□□□□ -1.53
VPS39-212ENST00000570023 ZNF423Q2M1K9 1284 aa5.52□□□□□ -1.53
VPS39-212ENST00000570023 RPS26P11Q5JNZ5 115 aaPredicted RBP5.52□□□□□ -1.53
VPS39-212ENST00000570023 NKAPLQ5M9Q1 402 aa5.52□□□□□ -1.53
VPS39-212ENST00000570023 SLC7A3Q8WY07 619 aa5.52□□□□□ -1.53
VPS39-212ENST00000570023 NLRP2Q9NX02 1062 aa5.52□□□□□ -1.53
VPS39-212ENST00000570023 ADAM23O75077 832 aa5.51□□□□□ -1.53
VPS39-212ENST00000570023 ALX3O95076 343 aa5.51□□□□□ -1.53
VPS39-212ENST00000570023 B3GALT4O96024 378 aa5.51□□□□□ -1.53
VPS39-212ENST00000570023 FURINP09958 794 aa5.51□□□□□ -1.53
VPS39-212ENST00000570023 H2AFB1P0C5Y9 115 aa5.51□□□□□ -1.53
VPS39-212ENST00000570023 H2AFB2P0C5Z0 115 aa5.51□□□□□ -1.53
VPS39-212ENST00000570023 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.51□□□□□ -1.53
VPS39-212ENST00000570023 AXDND1Q5T1B0 1012 aaPredicted RBP5.51□□□□□ -1.53
VPS39-212ENST00000570023 ALG1LQ6GMV1 187 aa5.51□□□□□ -1.53
VPS39-212ENST00000570023 PI16Q6UXB8 463 aa5.51□□□□□ -1.53
VPS39-212ENST00000570023 MEGF10Q96KG7 1140 aa5.51□□□□□ -1.53
VPS39-212ENST00000570023 PUS7Q96PZ0 661 aaKnown RBP5.51□□□□□ -1.53
VPS39-212ENST00000570023 MAP7D2Q96T17 732 aa5.51□□□□□ -1.53
VPS39-212ENST00000570023 POLR3GLQ9BT43 218 aa5.51□□□□□ -1.53
VPS39-212ENST00000570023 ZNF576Q9H609 170 aa5.51□□□□□ -1.53
VPS39-212ENST00000570023 MEGF11A6BM72 1044 aa5.5□□□□□ -1.53
VPS39-212ENST00000570023 P4HBP07237 508 aaKnown RBP5.5□□□□□ -1.53
VPS39-212ENST00000570023 XRCC5P13010 732 aaKnown RBP5.5□□□□□ -1.53
VPS39-212ENST00000570023 MAPK8P45983 427 aa5.5□□□□□ -1.53
VPS39-212ENST00000570023 MMP14P50281 582 aa5.5□□□□□ -1.53
VPS39-212ENST00000570023 UTP14CQ5TAP6 766 aaKnown RBP5.5□□□□□ -1.53
VPS39-212ENST00000570023 TAF3Q5VWG9 929 aa5.5□□□□□ -1.53
VPS39-212ENST00000570023 DNAJC14Q6Y2X3 702 aaPredicted RBP5.5□□□□□ -1.53
VPS39-212ENST00000570023 ACAD11Q709F0 780 aa5.5□□□□□ -1.53
VPS39-212ENST00000570023 SMAP1Q8IYB5 467 aaPredicted RBP5.5□□□□□ -1.53
VPS39-212ENST00000570023 UBASH3BQ8TF42 649 aa5.5□□□□□ -1.53
VPS39-212ENST00000570023 IPO9Q96P70 1041 aaKnown RBP5.5□□□□□ -1.53
VPS39-212ENST00000570023 BCO2Q9BYV7 579 aa5.5□□□□□ -1.53
VPS39-212ENST00000570023 NRSN2Q9GZP1 204 aa5.5□□□□□ -1.53
VPS39-212ENST00000570023 ZFYVE1Q9HBF4 777 aa5.5□□□□□ -1.53
VPS39-212ENST00000570023 PPP4R2Q9NY27 417 aa5.5□□□□□ -1.53
VPS39-212ENST00000570023 ANKRD33BA6NCL7 494 aa5.49□□□□□ -1.53
VPS39-212ENST00000570023 K7ELQ4 463 aaPredicted RBP5.49□□□□□ -1.53
VPS39-212ENST00000570023 GIPC1O14908 333 aa5.49□□□□□ -1.53
VPS39-212ENST00000570023 TPM2P07951 284 aa5.49□□□□□ -1.53
VPS39-212ENST00000570023 NLRP12P59046 1061 aa5.49□□□□□ -1.53
VPS39-212ENST00000570023 SETQ01105 290 aaPredicted RBP5.49□□□□□ -1.53
VPS39-212ENST00000570023 AGGF1Q8N302 714 aaeCLIP5.49□□□□□ -1.53
VPS39-212ENST00000570023 TP53INP1Q96A56 240 aa5.49□□□□□ -1.53
VPS39-212ENST00000570023 SETDB2Q96T68 719 aa5.49□□□□□ -1.53
VPS39-212ENST00000570023 CEP41Q9BYV8 373 aa5.49□□□□□ -1.53
VPS39-212ENST00000570023 WWC3Q9ULE0 1092 aa5.49□□□□□ -1.53
VPS39-212ENST00000570023 LOC100289279A0A1B0GTE1 492 aa5.48□□□□□ -1.53
VPS39-212ENST00000570023 LDHBP07195 334 aaKnown RBP5.48□□□□□ -1.53
VPS39-212ENST00000570023 ATP2B2Q01814 1243 aa5.48□□□□□ -1.53
VPS39-212ENST00000570023 GSTM4Q03013 218 aa5.48□□□□□ -1.53
VPS39-212ENST00000570023 NXPE4Q6UWF7 544 aa5.48□□□□□ -1.53
VPS39-212ENST00000570023 DDX54Q8TDD1 881 aaKnown RBP5.48□□□□□ -1.53
VPS39-212ENST00000570023 ZNF622Q969S3 477 aaKnown RBP eCLIP5.48□□□□□ -1.53
VPS39-212ENST00000570023 UBL7Q96S82 380 aaPredicted RBP5.48□□□□□ -1.53
VPS39-212ENST00000570023 TMPRSS13Q9BYE2 586 aa5.48□□□□□ -1.53
VPS39-212ENST00000570023 SRCIN1Q9C0H9 1055 aa5.48□□□□□ -1.53
VPS39-212ENST00000570023 RNF208Q9H0X6 261 aa5.48□□□□□ -1.53
VPS39-212ENST00000570023 GZF1Q9H116 711 aaPredicted RBP5.48□□□□□ -1.53
VPS39-212ENST00000570023 SUGCTQ9HAC7 445 aa5.48□□□□□ -1.53
VPS39-212ENST00000570023 DYRK3O43781 588 aa5.47□□□□□ -1.53
VPS39-212ENST00000570023 DLGAP3O95886 979 aa5.47□□□□□ -1.53
VPS39-212ENST00000570023 CYP11A1P05108 521 aa5.47□□□□□ -1.53
VPS39-212ENST00000570023 GLB1P16278 677 aa5.47□□□□□ -1.53
VPS39-212ENST00000570023 FCGRTP55899 365 aa5.47□□□□□ -1.53
VPS39-212ENST00000570023 ANKRD34AQ69YU3 496 aa5.47□□□□□ -1.53
VPS39-212ENST00000570023 DTHD1Q6ZMT9 781 aa5.47□□□□□ -1.53
VPS39-212ENST00000570023 C3orf58Q8NDZ4 430 aa5.47□□□□□ -1.53
VPS39-212ENST00000570023 TRIM44Q96DX7 344 aaPredicted RBP5.47□□□□□ -1.53
VPS39-212ENST00000570023 FAM46AQ96IP4 442 aaKnown RBP5.47□□□□□ -1.53
VPS39-212ENST00000570023 FRMD6Q96NE9 622 aa5.47□□□□□ -1.53
VPS39-212ENST00000570023 PLCD4Q9BRC7 762 aa5.47□□□□□ -1.53
VPS39-212ENST00000570023 TRIM56Q9BRZ2 755 aaKnown RBP5.47□□□□□ -1.53
VPS39-212ENST00000570023 RUSC1Q9BVN2 902 aa5.47□□□□□ -1.53
VPS39-212ENST00000570023 OSBPL7Q9BZF2 842 aa5.47□□□□□ -1.53
VPS39-212ENST00000570023 PRPF40AO75400 957 aaKnown RBP5.46□□□□□ -1.54
VPS39-212ENST00000570023 ERCC3P19447 782 aa5.46□□□□□ -1.54
VPS39-212ENST00000570023 ITGB7P26010 798 aa5.46□□□□□ -1.54
VPS39-212ENST00000570023 GSTT1P30711 240 aa5.46□□□□□ -1.54
VPS39-212ENST00000570023 RGS3P49796 1198 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms