RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 CFAP100Q494V2 611 aa26.81■■□□□ 1.88
CLN3-234ENST00000568472 HHIPL2Q6UWX4 724 aa26.81■■□□□ 1.88
CLN3-234ENST00000568472 ERICH6Q7L0X2 663 aa26.81■■□□□ 1.88
CLN3-234ENST00000568472 DCPSQ96C86 337 aaKnown RBP26.81■■□□□ 1.88
CLN3-234ENST00000568472 ZBED3Q96IU2 234 aaPredicted RBP26.81■■□□□ 1.88
CLN3-234ENST00000568472 MYO1BO43795 1136 aa26.8■■□□□ 1.88
CLN3-234ENST00000568472 PRDX5P30044 214 aa26.8■■□□□ 1.88
CLN3-234ENST00000568472 CRKP46108 304 aa26.8■■□□□ 1.88
CLN3-234ENST00000568472 RBM5P52756 815 aaKnown RBP eCLIP26.8■■□□□ 1.88
CLN3-234ENST00000568472 GRIK5Q16478 980 aa26.8■■□□□ 1.88
CLN3-234ENST00000568472 CNTROBQ8N137 903 aa26.8■■□□□ 1.88
CLN3-234ENST00000568472 ECHDC1Q9NTX5 307 aa26.8■■□□□ 1.88
CLN3-234ENST00000568472 SPDYE2BA6NHP3 402 aa26.79■■□□□ 1.88
CLN3-234ENST00000568472 SPDYE6P0CI01 402 aa26.79■■□□□ 1.88
CLN3-234ENST00000568472 C1QTNF8P60827 252 aa26.79■■□□□ 1.88
CLN3-234ENST00000568472 TMED8Q6PL24 325 aaPredicted RBP26.79■■□□□ 1.88
CLN3-234ENST00000568472 PI16Q6UXB8 463 aa26.79■■□□□ 1.88
CLN3-234ENST00000568472 ZDHHC15Q96MV8 337 aa26.79■■□□□ 1.88
CLN3-234ENST00000568472 SNRKQ9NRH2 765 aa26.79■■□□□ 1.88
CLN3-234ENST00000568472 LRP2BPQ9P2M1 347 aa26.79■■□□□ 1.88
CLN3-234ENST00000568472 PITPNM2Q9BZ72 1349 aa26.79■■□□□ 1.88
CLN3-234ENST00000568472 ZAP70P43403 619 aa26.78■■□□□ 1.88
CLN3-234ENST00000568472 TTF1Q15361 905 aaPredicted RBP26.78■■□□□ 1.88
CLN3-234ENST00000568472 NBPF9Q3BBW0 867 aa26.78■■□□□ 1.88
CLN3-234ENST00000568472 MAP1SQ66K74 1059 aaPredicted RBP26.78■■□□□ 1.88
CLN3-234ENST00000568472 CDC37L1Q7L3B6 337 aa26.78■■□□□ 1.88
CLN3-234ENST00000568472 DZIP1Q86YF9 867 aaKnown RBP26.78■■□□□ 1.88
CLN3-234ENST00000568472 ADAMTSL1Q8N6G6 1762 aa26.78■■□□□ 1.88
CLN3-234ENST00000568472 TTC41PQ6P2S7 1318 aa26.77■■□□□ 1.88
CLN3-234ENST00000568472 CYP2E1P05181 493 aaPredicted RBP26.77■■□□□ 1.88
CLN3-234ENST00000568472 GSTO1P78417 241 aa26.77■■□□□ 1.88
CLN3-234ENST00000568472 NUCB1Q02818 461 aa26.76■■□□□ 1.87
CLN3-234ENST00000568472 TBC1D9Q6ZT07 1266 aa26.76■■□□□ 1.87
CLN3-234ENST00000568472 FAM163AQ96GL9 167 aaPredicted RBP26.76■■□□□ 1.87
CLN3-234ENST00000568472 PRMT6Q96LA8 375 aaPredicted RBP26.76■■□□□ 1.87
CLN3-234ENST00000568472 GGA3Q9NZ52 723 aa26.76■■□□□ 1.87
CLN3-234ENST00000568472 MYH13Q9UKX3 1938 aa26.75■■□□□ 1.87
CLN3-234ENST00000568472 ITGBL1O95965 494 aaPredicted RBP26.75■■□□□ 1.87
CLN3-234ENST00000568472 LDHCP07864 332 aa26.75■■□□□ 1.87
CLN3-234ENST00000568472 ANGEL2Q5VTE6 544 aaKnown RBP26.75■■□□□ 1.87
CLN3-234ENST00000568472 SULF1Q8IWU6 871 aa26.75■■□□□ 1.87
CLN3-234ENST00000568472 HAUS7Q99871 368 aa26.75■■□□□ 1.87
CLN3-234ENST00000568472 RAI14Q9P0K7 980 aa26.75■■□□□ 1.87
CLN3-234ENST00000568472 ERC2O15083 957 aa26.74■■□□□ 1.87
CLN3-234ENST00000568472 MECOMQ03112 1051 aa26.74■■□□□ 1.87
CLN3-234ENST00000568472 ERICH6BQ5W0A0 696 aa26.74■■□□□ 1.87
CLN3-234ENST00000568472 KRT26Q7Z3Y9 468 aa26.74■■□□□ 1.87
CLN3-234ENST00000568472 CHD1LQ86WJ1 897 aa26.74■■□□□ 1.87
CLN3-234ENST00000568472 APOBEC3FQ8IUX4 373 aaKnown RBP26.74■■□□□ 1.87
CLN3-234ENST00000568472 B4GALNT3Q6L9W6 998 aa26.73■■□□□ 1.87
CLN3-234ENST00000568472 BOLA2Q9H3K6 86 aa26.73■■□□□ 1.87
CLN3-234ENST00000568472 MX1P20591 662 aa26.72■■□□□ 1.87
CLN3-234ENST00000568472 MAP3K12Q12852 859 aa26.72■■□□□ 1.87
CLN3-234ENST00000568472 APOBEC3HQ6NTF7 200 aaKnown RBP26.72■■□□□ 1.87
CLN3-234ENST00000568472 NSUN4Q96CB9 384 aaKnown RBP26.72■■□□□ 1.87
CLN3-234ENST00000568472 GLRX3O76003 335 aaKnown RBP26.71■■□□□ 1.87
CLN3-234ENST00000568472 DIXDC1Q155Q3 683 aa26.71■■□□□ 1.87
CLN3-234ENST00000568472 LNPKQ9C0E8 428 aa26.71■■□□□ 1.87
CLN3-234ENST00000568472 PIH1D3Q9NQM4 214 aaKnown RBP26.71■■□□□ 1.87
CLN3-234ENST00000568472 STAP2Q9UGK3 403 aa26.71■■□□□ 1.87
CLN3-234ENST00000568472 DAGLAQ9Y4D2 1042 aa26.71■■□□□ 1.87
CLN3-234ENST00000568472 GAKO14976 1311 aa26.7■■□□□ 1.87
CLN3-234ENST00000568472 ASTN2O75129 1339 aaPredicted RBP26.7■■□□□ 1.87
CLN3-234ENST00000568472 TNFAIP1Q13829 316 aa26.7■■□□□ 1.86
CLN3-234ENST00000568472 SPDYE2Q495Y8 402 aa26.7■■□□□ 1.86
CLN3-234ENST00000568472 USP48Q86UV5 1035 aa26.7■■□□□ 1.86
CLN3-234ENST00000568472 DNAJC2Q99543 621 aaKnown RBP26.7■■□□□ 1.86
CLN3-234ENST00000568472 PAG1Q9NWQ8 432 aa26.7■■□□□ 1.86
CLN3-234ENST00000568472 PASKQ96RG2 1323 aa26.69■■□□□ 1.86
CLN3-234ENST00000568472 SALL3Q9BXA9 1300 aa26.69■■□□□ 1.86
CLN3-234ENST00000568472 GOLIM4O00461 696 aa26.69■■□□□ 1.86
CLN3-234ENST00000568472 IDH1O75874 414 aaKnown RBP26.69■■□□□ 1.86
CLN3-234ENST00000568472 MAP4K4O95819 1239 aaPredicted RBP26.69■■□□□ 1.86
CLN3-234ENST00000568472 FKBP1CQ5VVH2 108 aa26.69■■□□□ 1.86
CLN3-234ENST00000568472 NAA16Q6N069 864 aaPredicted RBP26.69■■□□□ 1.86
CLN3-234ENST00000568472 GLIS2Q9BZE0 524 aaPredicted RBP26.69■■□□□ 1.86
CLN3-234ENST00000568472 TDRD3Q9H7E2 651 aaKnown RBP26.69■■□□□ 1.86
CLN3-234ENST00000568472 TMOD2Q9NZR1 351 aa26.69■■□□□ 1.86
CLN3-234ENST00000568472 ZNF70Q9UC06 446 aaPredicted RBP26.69■■□□□ 1.86
CLN3-234ENST00000568472 PCDHAC2Q9Y5I4 1007 aa26.69■■□□□ 1.86
CLN3-234ENST00000568472 PPP2R3BQ9Y5P8 575 aa26.69■■□□□ 1.86
CLN3-234ENST00000568472 MROH7-TTC4A0A0A0MT08 1334 aa26.68■■□□□ 1.86
CLN3-234ENST00000568472 ANTXR1Q9H6X2 564 aa26.68■■□□□ 1.86
CLN3-234ENST00000568472 AKAP11Q9UKA4 1901 aa26.68■■□□□ 1.86
CLN3-234ENST00000568472 GPR75-ASB3A0A0A6YYF3 556 aa26.67■■□□□ 1.86
CLN3-234ENST00000568472 OTUD7AQ8TE49 926 aaPredicted RBP26.67■■□□□ 1.86
CLN3-234ENST00000568472 NOL10Q9BSC4 688 aaKnown RBP26.67■■□□□ 1.86
CLN3-234ENST00000568472 NDUFB9Q9Y6M9 179 aa26.67■■□□□ 1.86
CLN3-234ENST00000568472 CLRN2A0PK11 232 aa26.66■■□□□ 1.86
CLN3-234ENST00000568472 TNNI2P48788 182 aa26.66■■□□□ 1.86
CLN3-234ENST00000568472 PDE1AP54750 535 aa26.66■■□□□ 1.86
CLN3-234ENST00000568472 CERS3Q8IU89 383 aa26.66■■□□□ 1.86
CLN3-234ENST00000568472 ZNF384Q8TF68 577 aa26.66■■□□□ 1.86
CLN3-234ENST00000568472 DDX24Q9GZR7 859 aaKnown RBP eCLIP26.66■■□□□ 1.863e-6■■■■■ 42.3
CLN3-234ENST00000568472 VEZTQ9HBM0 779 aa26.66■■□□□ 1.86
CLN3-234ENST00000568472 AOX1Q06278 1338 aa26.65■■□□□ 1.86
CLN3-234ENST00000568472 BAG3O95817 575 aa26.65■■□□□ 1.86
CLN3-234ENST00000568472 APLP1P51693 650 aa26.65■■□□□ 1.86
CLN3-234ENST00000568472 CENPQQ7L2Z9 268 aaPredicted RBP26.65■■□□□ 1.86
CLN3-234ENST00000568472 PI4K2BQ8TCG2 481 aa26.65■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms