RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 PHKA1P46020 1223 aa18.62■□□□□ 0.57
VPS39-210ENST00000568357 RBM5P52756 815 aaKnown RBP eCLIP18.62■□□□□ 0.57
VPS39-210ENST00000568357 TBC1D22AQ8WUA7 517 aa18.62■□□□□ 0.57
VPS39-210ENST00000568357 COG6Q9Y2V7 657 aa18.62■□□□□ 0.57
VPS39-210ENST00000568357 A0A1B0GUL7 405 aa18.61■□□□□ 0.57
VPS39-210ENST00000568357 MVPQ14764 893 aaKnown RBP18.61■□□□□ 0.57
VPS39-210ENST00000568357 CCDC102BQ68D86 513 aa18.61■□□□□ 0.57
VPS39-210ENST00000568357 C2orf69Q8N8R5 385 aa18.61■□□□□ 0.57
VPS39-210ENST00000568357 XAGE2Q96GT9 111 aa18.61■□□□□ 0.57
VPS39-210ENST00000568357 SERPINA10Q9UK55 444 aa18.61■□□□□ 0.57
VPS39-210ENST00000568357 AKAP2Q9Y2D5 859 aa18.61■□□□□ 0.57
VPS39-210ENST00000568357 POLR2AP24928 1970 aaKnown RBP18.61■□□□□ 0.57
VPS39-210ENST00000568357 CLRN2A0PK11 232 aa18.6■□□□□ 0.57
VPS39-210ENST00000568357 SURF6O75683 361 aaKnown RBP18.6■□□□□ 0.57
VPS39-210ENST00000568357 CRKP46108 304 aa18.6■□□□□ 0.57
VPS39-210ENST00000568357 HUNKP57058 714 aa18.6■□□□□ 0.57
VPS39-210ENST00000568357 C20orf194Q5TEA3 1177 aa18.6■□□□□ 0.57
VPS39-210ENST00000568357 CEP85Q6P2H3 762 aa18.6■□□□□ 0.57
VPS39-210ENST00000568357 GNL3LQ9NVN8 582 aaKnown RBP18.6■□□□□ 0.57
VPS39-210ENST00000568357 APOBEC3FQ8IUX4 373 aaKnown RBP18.59■□□□□ 0.57
VPS39-210ENST00000568357 WDR66Q8TBY9 1149 aa18.59■□□□□ 0.57
VPS39-210ENST00000568357 YTHDC1Q96MU7 727 aaKnown RBP18.59■□□□□ 0.57
VPS39-210ENST00000568357 NEUROD6Q96NK8 337 aa18.59■□□□□ 0.57
VPS39-210ENST00000568357 NOP58Q9Y2X3 529 aaKnown RBP18.59■□□□□ 0.57
VPS39-210ENST00000568357 COL1A1P02452 1464 aaPredicted RBP18.58■□□□□ 0.57
VPS39-210ENST00000568357 MYO1BO43795 1136 aa18.58■□□□□ 0.56
VPS39-210ENST00000568357 HDLBPQ00341 1268 aaKnown RBP18.58■□□□□ 0.56
VPS39-210ENST00000568357 NOGQ13253 232 aa18.58■□□□□ 0.56
VPS39-210ENST00000568357 MOB2Q70IA6 237 aa18.58■□□□□ 0.56
VPS39-210ENST00000568357 DEFB129Q9H1M3 183 aa18.58■□□□□ 0.56
VPS39-210ENST00000568357 TDRD3Q9H7E2 651 aaKnown RBP18.58■□□□□ 0.56
VPS39-210ENST00000568357 ZBTB40Q9NUA8 1239 aa18.58■□□□□ 0.56
VPS39-210ENST00000568357 DDX19BQ9UMR2 479 aa18.58■□□□□ 0.56
VPS39-210ENST00000568357 SUGT1Q9Y2Z0 365 aa18.58■□□□□ 0.56
VPS39-210ENST00000568357 AKAP11Q9UKA4 1901 aa18.58■□□□□ 0.56
VPS39-210ENST00000568357 ZBTB22O15209 634 aa18.57■□□□□ 0.56
VPS39-210ENST00000568357 MRIQ9BWK5 157 aa18.57■□□□□ 0.56
VPS39-210ENST00000568357 VEZTQ9HBM0 779 aa18.57■□□□□ 0.56
VPS39-210ENST00000568357 ZNF70Q9UC06 446 aaPredicted RBP18.57■□□□□ 0.56
VPS39-210ENST00000568357 DENND2AQ9ULE3 1009 aa18.57■□□□□ 0.56
VPS39-210ENST00000568357 SEMA3EO15041 775 aa18.56■□□□□ 0.56
VPS39-210ENST00000568357 OS9Q13438 667 aaPredicted RBP18.56■□□□□ 0.56
VPS39-210ENST00000568357 RASGRF1Q13972 1273 aa18.56■□□□□ 0.56
VPS39-210ENST00000568357 PDE3AQ14432 1141 aa18.56■□□□□ 0.56
VPS39-210ENST00000568357 SPDYE2Q495Y8 402 aa18.56■□□□□ 0.56
VPS39-210ENST00000568357 RGMBQ6NW40 437 aa18.56■□□□□ 0.56
VPS39-210ENST00000568357 TEKT1Q969V4 418 aa18.56■□□□□ 0.56
VPS39-210ENST00000568357 FKBP1BP68106 108 aa18.55■□□□□ 0.56
VPS39-210ENST00000568357 APOBEC3HQ6NTF7 200 aaKnown RBP18.55■□□□□ 0.56
VPS39-210ENST00000568357 FAM155AB1AL88 458 aaPredicted RBP18.54■□□□□ 0.56
VPS39-210ENST00000568357 UBE2Q2LH0YL09 131 aa18.54■□□□□ 0.56
VPS39-210ENST00000568357 PRDX5P30044 214 aa18.54■□□□□ 0.56
VPS39-210ENST00000568357 RASA3Q14644 834 aa18.54■□□□□ 0.56
VPS39-210ENST00000568357 TNNI3KQ59H18 835 aa18.54■□□□□ 0.56
VPS39-210ENST00000568357 HHIPL2Q6UWX4 724 aa18.54■□□□□ 0.56
VPS39-210ENST00000568357 SIRT2Q8IXJ6 389 aa18.54■□□□□ 0.56
VPS39-210ENST00000568357 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.54■□□□□ 0.56
VPS39-210ENST00000568357 ZDHHC15Q96MV8 337 aa18.54■□□□□ 0.56
VPS39-210ENST00000568357 GPR108Q9NPR9 543 aa18.54■□□□□ 0.56
VPS39-210ENST00000568357 FPGT-TNNI3KV9GXZ4 949 aa18.54■□□□□ 0.56
VPS39-210ENST00000568357 SALL1Q9NSC2 1324 aa18.53■□□□□ 0.56
VPS39-210ENST00000568357 ZNF157P51786 506 aaPredicted RBP18.53■□□□□ 0.56
VPS39-210ENST00000568357 PRKG1Q13976 671 aa18.53■□□□□ 0.56
VPS39-210ENST00000568357 DIXDC1Q155Q3 683 aa18.53■□□□□ 0.56
VPS39-210ENST00000568357 GORABQ5T7V8 394 aa18.53■□□□□ 0.56
VPS39-210ENST00000568357 RPAP2Q8IXW5 612 aaPredicted RBP18.53■□□□□ 0.56
VPS39-210ENST00000568357 SAGE1Q9NXZ1 904 aa18.53■□□□□ 0.56
VPS39-210ENST00000568357 FZD1Q9UP38 647 aa18.53■□□□□ 0.56
VPS39-210ENST00000568357 MAST3O60307 1309 aa18.52■□□□□ 0.56
VPS39-210ENST00000568357 TCP10L2B9ZVM9 353 aa18.52■□□□□ 0.56
VPS39-210ENST00000568357 LDHBP07195 334 aaKnown RBP18.52■□□□□ 0.56
VPS39-210ENST00000568357 NF2P35240 595 aa18.52■□□□□ 0.56
VPS39-210ENST00000568357 TTLL12Q14166 644 aaPredicted RBP18.52■□□□□ 0.56
VPS39-210ENST00000568357 NBPF12Q5TAG4 269 aaPredicted RBP18.52■□□□□ 0.56
VPS39-210ENST00000568357 CCDC102AQ96A19 550 aa18.52■□□□□ 0.56
VPS39-210ENST00000568357 DBNDD2Q9BQY9 259 aa18.52■□□□□ 0.56
VPS39-210ENST00000568357 HMG20BQ9P0W2 317 aa18.52■□□□□ 0.56
VPS39-210ENST00000568357 EXOC6BQ9Y2D4 811 aa18.52■□□□□ 0.56
VPS39-210ENST00000568357 PPP2R3BQ9Y5P8 575 aa18.52■□□□□ 0.56
VPS39-210ENST00000568357 PDS5AQ29RF7 1337 aaKnown RBP18.51■□□□□ 0.55
VPS39-210ENST00000568357 CACNB3P54284 484 aa18.51■□□□□ 0.55
VPS39-210ENST00000568357 PI16Q6UXB8 463 aa18.51■□□□□ 0.55
VPS39-210ENST00000568357 EAF2Q96CJ1 260 aaPredicted RBP18.51■□□□□ 0.55
VPS39-210ENST00000568357 RNF186Q9NXI6 227 aa18.51■□□□□ 0.55
VPS39-210ENST00000568357 TRPA1O75762 1119 aa18.5■□□□□ 0.55
VPS39-210ENST00000568357 ARID4AP29374 1257 aaPredicted RBP18.5■□□□□ 0.55
VPS39-210ENST00000568357 KIF23Q02241 960 aaPredicted RBP18.5■□□□□ 0.55
VPS39-210ENST00000568357 CDAN1Q8IWY9 1227 aa18.5■□□□□ 0.55
VPS39-210ENST00000568357 SPATA5Q8NB90 893 aa18.5■□□□□ 0.55
VPS39-210ENST00000568357 TEPSINQ96N21 525 aa18.5■□□□□ 0.55
VPS39-210ENST00000568357 CHMP4BQ9H444 224 aaKnown RBP18.5■□□□□ 0.55
VPS39-210ENST00000568357 ABCF2Q9UG63 623 aa18.5■□□□□ 0.55
VPS39-210ENST00000568357 DAGLAQ9Y4D2 1042 aa18.5■□□□□ 0.55
VPS39-210ENST00000568357 SLC10A3P09131 477 aa18.49■□□□□ 0.55
VPS39-210ENST00000568357 MCAMP43121 646 aa18.49■□□□□ 0.55
VPS39-210ENST00000568357 TNFAIP1Q13829 316 aa18.49■□□□□ 0.55
VPS39-210ENST00000568357 SUPT20HL1Q3ZLR7 823 aa18.49■□□□□ 0.55
VPS39-210ENST00000568357 TBC1D9Q6ZT07 1266 aa18.49■□□□□ 0.55
VPS39-210ENST00000568357 ZGPATQ8N5A5 531 aaKnown RBP18.49■□□□□ 0.55
VPS39-210ENST00000568357 TMEM39BQ9GZU3 492 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms