RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 KLHDC4Q8TBB5 520 aa23.44■■□□□ 1.34
CLN3-218ENST00000565688 TDRD3Q9H7E2 651 aaKnown RBP23.44■■□□□ 1.34
CLN3-218ENST00000565688 IQSEC3Q9UPP2 1182 aaPredicted RBP23.44■■□□□ 1.34
CLN3-218ENST00000565688 GPR25O00155 361 aa23.43■■□□□ 1.34
CLN3-218ENST00000565688 TNNI2P48788 182 aa23.43■■□□□ 1.34
CLN3-218ENST00000565688 WNK4Q96J92 1243 aa23.43■■□□□ 1.34
CLN3-218ENST00000565688 CLMNQ96JQ2 1002 aa23.43■■□□□ 1.34
CLN3-218ENST00000565688 CCER2I3L3R5 266 aa23.42■■□□□ 1.34
CLN3-218ENST00000565688 EYA2O00167 538 aa23.42■■□□□ 1.34
CLN3-218ENST00000565688 USP2O75604 605 aaPredicted RBP23.42■■□□□ 1.34
CLN3-218ENST00000565688 BCAMP50895 628 aa23.42■■□□□ 1.34
CLN3-218ENST00000565688 ANKRD13AQ8IZ07 590 aa23.42■■□□□ 1.34
CLN3-218ENST00000565688 HDAC5Q9UQL6 1122 aa23.42■■□□□ 1.34
CLN3-218ENST00000565688 SUGT1Q9Y2Z0 365 aa23.42■■□□□ 1.34
CLN3-218ENST00000565688 UBTFL1P0CB47 393 aaPredicted RBP23.41■■□□□ 1.34
CLN3-218ENST00000565688 FGFR2P21802 821 aa23.41■■□□□ 1.34
CLN3-218ENST00000565688 RFX5P48382 616 aaPredicted RBP23.41■■□□□ 1.34
CLN3-218ENST00000565688 TEKT1Q969V4 418 aa23.41■■□□□ 1.34
CLN3-218ENST00000565688 MRIQ9BWK5 157 aa23.41■■□□□ 1.34
CLN3-218ENST00000565688 API5Q9BZZ5 524 aaKnown RBP23.41■■□□□ 1.34
CLN3-218ENST00000565688 FBXO3Q9UK99 471 aa23.41■■□□□ 1.34
CLN3-218ENST00000565688 MAST3O60307 1309 aa23.4■■□□□ 1.34
CLN3-218ENST00000565688 SLC5A1P13866 664 aa23.4■■□□□ 1.34
CLN3-218ENST00000565688 IFNL1Q8IU54 200 aa23.4■■□□□ 1.34
CLN3-218ENST00000565688 LPIN2Q92539 896 aa23.4■■□□□ 1.34
CLN3-218ENST00000565688 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.4■■□□□ 1.34
CLN3-218ENST00000565688 NOB1Q9ULX3 412 aaKnown RBP23.4■■□□□ 1.34
CLN3-218ENST00000565688 TCP10L2B9ZVM9 353 aa23.39■■□□□ 1.33
CLN3-218ENST00000565688 FKTNO75072 461 aa23.39■■□□□ 1.33
CLN3-218ENST00000565688 GRIK5Q16478 980 aa23.39■■□□□ 1.33
CLN3-218ENST00000565688 TEPSINQ96N21 525 aa23.39■■□□□ 1.33
CLN3-218ENST00000565688 OTUD7BQ6GQQ9 843 aa23.38■■□□□ 1.33
CLN3-218ENST00000565688 ZDHHC15Q96MV8 337 aa23.38■■□□□ 1.33
CLN3-218ENST00000565688 CIAO1O76071 339 aa23.37■■□□□ 1.33
CLN3-218ENST00000565688 ATG9AQ7Z3C6 839 aa23.37■■□□□ 1.33
CLN3-218ENST00000565688 TMEM39BQ9GZU3 492 aa23.37■■□□□ 1.33
CLN3-218ENST00000565688 TMOD2Q9NZR1 351 aa23.37■■□□□ 1.33
CLN3-218ENST00000565688 HPS5Q9UPZ3 1129 aa23.37■■□□□ 1.33
CLN3-218ENST00000565688 LAMB1P07942 1786 aa23.37■■□□□ 1.33
CLN3-218ENST00000565688 WDR66Q8TBY9 1149 aa23.36■■□□□ 1.33
CLN3-218ENST00000565688 R3HDMLQ9H3Y0 253 aa23.36■■□□□ 1.33
CLN3-218ENST00000565688 FKBP1CQ5VVH2 108 aa23.35■■□□□ 1.33
CLN3-218ENST00000565688 HHIPL2Q6UWX4 724 aa23.35■■□□□ 1.33
CLN3-218ENST00000565688 CEP126Q9P2H0 1117 aa23.35■■□□□ 1.33
CLN3-218ENST00000565688 TNRC18O15417 2968 aaPredicted RBP23.34■■□□□ 1.33
CLN3-218ENST00000565688 IGF2BP3O00425 579 aaKnown RBP eCLIP23.34■■□□□ 1.33
CLN3-218ENST00000565688 GJA5P36382 358 aa23.34■■□□□ 1.33
CLN3-218ENST00000565688 FBXO46Q6PJ61 603 aaPredicted RBP23.34■■□□□ 1.33
CLN3-218ENST00000565688 FAM83AQ86UY5 434 aa23.34■■□□□ 1.33
CLN3-218ENST00000565688 OPTNQ96CV9 577 aa23.34■■□□□ 1.33
CLN3-218ENST00000565688 HOOK2Q96ED9 719 aa23.34■■□□□ 1.33
CLN3-218ENST00000565688 SIL1Q9H173 461 aa23.34■■□□□ 1.33
CLN3-218ENST00000565688 ELP3Q9H9T3 547 aa23.34■■□□□ 1.33
CLN3-218ENST00000565688 GNL3LQ9NVN8 582 aaKnown RBP23.34■■□□□ 1.33
CLN3-218ENST00000565688 TESPA1A2RU30 521 aaPredicted RBP23.33■■□□□ 1.33
CLN3-218ENST00000565688 RARSP54136 660 aaKnown RBP23.33■■□□□ 1.33
CLN3-218ENST00000565688 SOX10P56693 466 aa23.33■■□□□ 1.33
CLN3-218ENST00000565688 MAP3K9P80192 1104 aa23.33■■□□□ 1.33
CLN3-218ENST00000565688 ATP2B3Q16720 1220 aa23.33■■□□□ 1.33
CLN3-218ENST00000565688 APOBEC3HQ6NTF7 200 aaKnown RBP23.33■■□□□ 1.33
CLN3-218ENST00000565688 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.33■■□□□ 1.33
CLN3-218ENST00000565688 CDAN1Q8IWY9 1227 aa23.33■■□□□ 1.33
CLN3-218ENST00000565688 ARHGAP45Q92619 1136 aa23.33■■□□□ 1.33
CLN3-218ENST00000565688 CSADQ9Y600 493 aa23.33■■□□□ 1.33
CLN3-218ENST00000565688 IL15P40933 162 aaPredicted RBP23.32■■□□□ 1.32
CLN3-218ENST00000565688 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.32■■□□□ 1.32
CLN3-218ENST00000565688 LRRFIP2Q9Y608 721 aaKnown RBP23.32■■□□□ 1.32
CLN3-218ENST00000565688 OTOFQ9HC10 1997 aa23.32■■□□□ 1.32
CLN3-218ENST00000565688 CACNB3P54284 484 aa23.31■■□□□ 1.32
CLN3-218ENST00000565688 VGLL4Q14135 290 aa23.31■■□□□ 1.32
CLN3-218ENST00000565688 RPAP1Q9BWH6 1393 aaPredicted RBP23.29■■□□□ 1.32
CLN3-218ENST00000565688 SEMA3EO15041 775 aa23.29■■□□□ 1.32
CLN3-218ENST00000565688 GTF2A2P52657 109 aa23.29■■□□□ 1.32
CLN3-218ENST00000565688 CRHR2Q13324 411 aa23.29■■□□□ 1.32
CLN3-218ENST00000565688 INTS3Q68E01 1043 aaKnown RBP23.29■■□□□ 1.32
CLN3-218ENST00000565688 MS4A4AQ96JQ5 239 aa23.29■■□□□ 1.32
CLN3-218ENST00000565688 PTPN18Q99952 460 aa23.29■■□□□ 1.32
CLN3-218ENST00000565688 COPRSQ9NQ92 184 aa23.29■■□□□ 1.32
CLN3-218ENST00000565688 MYH13Q9UKX3 1938 aa23.29■■□□□ 1.32
CLN3-218ENST00000565688 GNAI3P08754 354 aa23.28■■□□□ 1.32
CLN3-218ENST00000565688 ERO1AQ96HE7 468 aa23.28■■□□□ 1.32
CLN3-218ENST00000565688 MEIS3Q99687 375 aa23.28■■□□□ 1.32
CLN3-218ENST00000565688 DENND2AQ9ULE3 1009 aa23.28■■□□□ 1.32
CLN3-218ENST00000565688 ZBTB22O15209 634 aa23.27■■□□□ 1.32
CLN3-218ENST00000565688 IPO8O15397 1037 aaKnown RBP23.27■■□□□ 1.32
CLN3-218ENST00000565688 LDHBP07195 334 aaKnown RBP23.27■■□□□ 1.32
CLN3-218ENST00000565688 DCAF15Q66K64 600 aa23.27■■□□□ 1.32
CLN3-218ENST00000565688 SALL1Q9NSC2 1324 aa23.27■■□□□ 1.32
CLN3-218ENST00000565688 SPDYE5A6NIY4 337 aa23.26■■□□□ 1.31
CLN3-218ENST00000565688 CNKSR2Q8WXI2 1034 aa23.26■■□□□ 1.31
CLN3-218ENST00000565688 OTUD5Q96G74 571 aa23.26■■□□□ 1.31
CLN3-218ENST00000565688 WRNIP1Q96S55 665 aa23.26■■□□□ 1.31
CLN3-218ENST00000565688 PA2G4Q9UQ80 394 aaKnown RBP23.26■■□□□ 1.31
CLN3-218ENST00000565688 DAGLAQ9Y4D2 1042 aa23.26■■□□□ 1.31
CLN3-218ENST00000565688 TRIM17Q9Y577 477 aa23.26■■□□□ 1.31
CLN3-218ENST00000565688 CCL15-CCL14A0A0B4J2E2 113 aa23.25■■□□□ 1.31
CLN3-218ENST00000565688 CCL15Q16663 113 aa23.25■■□□□ 1.31
CLN3-218ENST00000565688 OTOP1Q7RTM1 612 aa23.25■■□□□ 1.31
CLN3-218ENST00000565688 ERO1BQ86YB8 467 aa23.25■■□□□ 1.31
CLN3-218ENST00000565688 ZGPATQ8N5A5 531 aaKnown RBP23.25■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms