RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 CHAF1AQ13111 956 aaPredicted RBP18.54■□□□□ 0.56
CLN3-213ENST00000565047 RASA3Q14644 834 aa18.54■□□□□ 0.56
CLN3-213ENST00000565047 NBPF12Q5TAG4 269 aaPredicted RBP18.54■□□□□ 0.56
CLN3-213ENST00000565047 TEPSINQ96N21 525 aa18.54■□□□□ 0.56
CLN3-213ENST00000565047 TDRD3Q9H7E2 651 aaKnown RBP18.54■□□□□ 0.56
CLN3-213ENST00000565047 CEP126Q9P2H0 1117 aa18.54■□□□□ 0.56
CLN3-213ENST00000565047 SUGT1Q9Y2Z0 365 aa18.54■□□□□ 0.56
CLN3-213ENST00000565047 RBM5P52756 815 aaKnown RBP eCLIP18.53■□□□□ 0.56
CLN3-213ENST00000565047 ATP2B3Q16720 1220 aa18.53■□□□□ 0.56
CLN3-213ENST00000565047 ZKSCAN2Q63HK3 967 aa18.53■□□□□ 0.56
CLN3-213ENST00000565047 APOBEC3HQ6NTF7 200 aaKnown RBP18.53■□□□□ 0.56
CLN3-213ENST00000565047 REM2Q8IYK8 340 aaPredicted RBP18.53■□□□□ 0.56
CLN3-213ENST00000565047 TMEM57Q8N5G2 664 aa18.53■□□□□ 0.56
CLN3-213ENST00000565047 CLUAP1Q96AJ1 413 aa18.53■□□□□ 0.56
CLN3-213ENST00000565047 ZDHHC15Q96MV8 337 aa18.53■□□□□ 0.56
CLN3-213ENST00000565047 SRGAP3O43295 1099 aa18.52■□□□□ 0.56
CLN3-213ENST00000565047 PRKG1Q13976 671 aa18.52■□□□□ 0.56
CLN3-213ENST00000565047 ARMC9Q7Z3E5 817 aa18.52■□□□□ 0.56
CLN3-213ENST00000565047 CDAN1Q8IWY9 1227 aa18.52■□□□□ 0.56
CLN3-213ENST00000565047 VEZTQ9HBM0 779 aa18.52■□□□□ 0.56
CLN3-213ENST00000565047 ANGEL1Q9UNK9 670 aaKnown RBP18.52■□□□□ 0.56
CLN3-213ENST00000565047 PNMA6EA0A0J9YXQ4 647 aa18.51■□□□□ 0.55
CLN3-213ENST00000565047 UNCXA6NJT0 531 aa18.51■□□□□ 0.55
CLN3-213ENST00000565047 USP2O75604 605 aaPredicted RBP18.51■□□□□ 0.55
CLN3-213ENST00000565047 GNAI2P04899 355 aa18.51■□□□□ 0.55
CLN3-213ENST00000565047 TM4SF4P48230 202 aa18.51■□□□□ 0.55
CLN3-213ENST00000565047 FRAT2O75474 233 aaPredicted RBP18.5■□□□□ 0.55
CLN3-213ENST00000565047 TRPA1O75762 1119 aa18.5■□□□□ 0.55
CLN3-213ENST00000565047 RLBP1P12271 317 aa18.5■□□□□ 0.55
CLN3-213ENST00000565047 ADORA1P30542 326 aa18.5■□□□□ 0.55
CLN3-213ENST00000565047 PHKA1P46020 1223 aa18.5■□□□□ 0.55
CLN3-213ENST00000565047 TIMM10P62072 90 aa18.5■□□□□ 0.55
CLN3-213ENST00000565047 TTLL12Q14166 644 aaPredicted RBP18.5■□□□□ 0.55
CLN3-213ENST00000565047 SUPT20HL1Q3ZLR7 823 aa18.5■□□□□ 0.55
CLN3-213ENST00000565047 WDR66Q8TBY9 1149 aa18.5■□□□□ 0.55
CLN3-213ENST00000565047 SALL1Q9NSC2 1324 aa18.49■□□□□ 0.55
CLN3-213ENST00000565047 SPRYD7Q5W111 196 aa18.49■□□□□ 0.55
CLN3-213ENST00000565047 HHIPL2Q6UWX4 724 aa18.49■□□□□ 0.55
CLN3-213ENST00000565047 TEKT1Q969V4 418 aa18.49■□□□□ 0.55
CLN3-213ENST00000565047 SEMA3EO15041 775 aa18.48■□□□□ 0.55
CLN3-213ENST00000565047 ZBTB7BO15156 539 aaPredicted RBP18.48■□□□□ 0.55
CLN3-213ENST00000565047 TFCP2Q12800 502 aa18.48■□□□□ 0.55
CLN3-213ENST00000565047 TNFAIP1Q13829 316 aa18.48■□□□□ 0.55
CLN3-213ENST00000565047 CCDC102BQ68D86 513 aa18.48■□□□□ 0.55
CLN3-213ENST00000565047 CLMNQ96JQ2 1002 aa18.48■□□□□ 0.55
CLN3-213ENST00000565047 TMEM39BQ9GZU3 492 aa18.48■□□□□ 0.55
CLN3-213ENST00000565047 CASP8AP2Q9UKL3 1982 aa18.48■□□□□ 0.55
CLN3-213ENST00000565047 TCP10L2B9ZVM9 353 aa18.47■□□□□ 0.55
CLN3-213ENST00000565047 PPP1R12BO60237 982 aaPredicted RBP18.47■□□□□ 0.55
CLN3-213ENST00000565047 CAPN15O75808 1086 aa18.47■□□□□ 0.55
CLN3-213ENST00000565047 PRDX5P30044 214 aa18.47■□□□□ 0.55
CLN3-213ENST00000565047 POLA2Q14181 598 aa18.47■□□□□ 0.55
CLN3-213ENST00000565047 FKBP1CQ5VVH2 108 aa18.47■□□□□ 0.55
CLN3-213ENST00000565047 ABHD8Q96I13 439 aa18.47■□□□□ 0.55
CLN3-213ENST00000565047 MAST3O60307 1309 aa18.47■□□□□ 0.55
CLN3-213ENST00000565047 LAMB1P07942 1786 aa18.46■□□□□ 0.55
CLN3-213ENST00000565047 A0A1B0GUL7 405 aa18.46■□□□□ 0.55
CLN3-213ENST00000565047 GJA5P36382 358 aa18.46■□□□□ 0.55
CLN3-213ENST00000565047 CACNB3P54284 484 aa18.46■□□□□ 0.55
CLN3-213ENST00000565047 XAGE2Q96GT9 111 aa18.46■□□□□ 0.55
CLN3-213ENST00000565047 DENND2AQ9ULE3 1009 aa18.46■□□□□ 0.55
CLN3-213ENST00000565047 AKAP11Q9UKA4 1901 aa18.46■□□□□ 0.55
CLN3-213ENST00000565047 PDS5AQ29RF7 1337 aaKnown RBP18.46■□□□□ 0.55
CLN3-213ENST00000565047 ATP8B2P98198 1209 aa18.45■□□□□ 0.54
CLN3-213ENST00000565047 MKRN3Q13064 507 aaKnown RBP18.45■□□□□ 0.54
CLN3-213ENST00000565047 RASGRF1Q13972 1273 aa18.45■□□□□ 0.54
CLN3-213ENST00000565047 FAM83AQ86UY5 434 aa18.45■□□□□ 0.54
CLN3-213ENST00000565047 SSH3Q8TE77 659 aa18.45■□□□□ 0.54
CLN3-213ENST00000565047 SLC10A4Q96EP9 437 aa18.45■□□□□ 0.54
CLN3-213ENST00000565047 CFHR5Q9BXR6 569 aa18.45■□□□□ 0.54
CLN3-213ENST00000565047 GNL3LQ9NVN8 582 aaKnown RBP18.45■□□□□ 0.54
CLN3-213ENST00000565047 DAGLAQ9Y4D2 1042 aa18.45■□□□□ 0.54
CLN3-213ENST00000565047 MYH13Q9UKX3 1938 aa18.45■□□□□ 0.54
CLN3-213ENST00000565047 ZBTB48P10074 688 aaPredicted RBP18.44■□□□□ 0.54
CLN3-213ENST00000565047 DIXDC1Q155Q3 683 aa18.44■□□□□ 0.54
CLN3-213ENST00000565047 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.44■□□□□ 0.54
CLN3-213ENST00000565047 WNK4Q96J92 1243 aa18.44■□□□□ 0.54
CLN3-213ENST00000565047 MCOLN1Q9GZU1 580 aa18.44■□□□□ 0.54
CLN3-213ENST00000565047 AKAP2Q9Y2D5 859 aa18.44■□□□□ 0.54
CLN3-213ENST00000565047 IREB2P48200 963 aaKnown RBP18.43■□□□□ 0.54
CLN3-213ENST00000565047 TNNI2P48788 182 aa18.43■□□□□ 0.54
CLN3-213ENST00000565047 ANKRD13AQ8IZ07 590 aa18.43■□□□□ 0.54
CLN3-213ENST00000565047 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.43■□□□□ 0.54
CLN3-213ENST00000565047 OTOFQ9HC10 1997 aa18.42■□□□□ 0.54
CLN3-213ENST00000565047 TBC1D8O95759 1140 aa18.42■□□□□ 0.54
CLN3-213ENST00000565047 LDHBP07195 334 aaKnown RBP18.42■□□□□ 0.54
CLN3-213ENST00000565047 NOM1Q5C9Z4 860 aaKnown RBP18.42■□□□□ 0.54
CLN3-213ENST00000565047 CDC42EP5Q6NZY7 148 aa18.42■□□□□ 0.54
CLN3-213ENST00000565047 ZNF384Q8TF68 577 aa18.42■□□□□ 0.54
CLN3-213ENST00000565047 R3HDMLQ9H3Y0 253 aa18.42■□□□□ 0.54
CLN3-213ENST00000565047 TESPA1A2RU30 521 aaPredicted RBP18.41■□□□□ 0.54
CLN3-213ENST00000565047 INHBEP58166 350 aa18.41■□□□□ 0.54
CLN3-213ENST00000565047 SREBF2Q12772 1141 aa18.41■□□□□ 0.54
CLN3-213ENST00000565047 FAM163AQ96GL9 167 aaPredicted RBP18.41■□□□□ 0.54
CLN3-213ENST00000565047 C1orf115Q9H7X2 142 aa18.41■□□□□ 0.54
CLN3-213ENST00000565047 NOP58Q9Y2X3 529 aaKnown RBP18.41■□□□□ 0.54
CLN3-213ENST00000565047 GAKO14976 1311 aa18.41■□□□□ 0.54
CLN3-213ENST00000565047 RPAP1Q9BWH6 1393 aaPredicted RBP18.41■□□□□ 0.54
CLN3-213ENST00000565047 MANSC4A6NHS7 340 aaPredicted RBP18.4■□□□□ 0.54
CLN3-213ENST00000565047 IGF2BP3O00425 579 aaKnown RBP eCLIP18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms