RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 FRAT2O75474 233 aaPredicted RBP13.51□□□□□ -0.25
VPS39-208ENST00000564994 SLC5A1P13866 664 aa13.51□□□□□ -0.25
VPS39-208ENST00000564994 MKRN3Q13064 507 aaKnown RBP13.51□□□□□ -0.25
VPS39-208ENST00000564994 RASA3Q14644 834 aa13.51□□□□□ -0.25
VPS39-208ENST00000564994 ATF7IPQ6VMQ6 1270 aa13.51□□□□□ -0.25
VPS39-208ENST00000564994 CDAN1Q8IWY9 1227 aa13.51□□□□□ -0.25
VPS39-208ENST00000564994 DZIP1LQ8IYY4 767 aaKnown RBP13.51□□□□□ -0.25
VPS39-208ENST00000564994 TBC1D22AQ8WUA7 517 aa13.51□□□□□ -0.25
VPS39-208ENST00000564994 MAP3K11Q16584 847 aa13.5□□□□□ -0.25
VPS39-208ENST00000564994 REM2Q8IYK8 340 aaPredicted RBP13.5□□□□□ -0.25
VPS39-208ENST00000564994 FRAT1Q92837 279 aaPredicted RBP13.5□□□□□ -0.25
VPS39-208ENST00000564994 TEPSINQ96N21 525 aa13.5□□□□□ -0.25
VPS39-208ENST00000564994 COPRSQ9NQ92 184 aa13.5□□□□□ -0.25
VPS39-208ENST00000564994 HDAC5Q9UQL6 1122 aa13.5□□□□□ -0.25
VPS39-208ENST00000564994 IPO8O15397 1037 aaKnown RBP13.49□□□□□ -0.25
VPS39-208ENST00000564994 GNAI3P08754 354 aa13.49□□□□□ -0.25
VPS39-208ENST00000564994 IL15P40933 162 aaPredicted RBP13.49□□□□□ -0.25
VPS39-208ENST00000564994 TM4SF4P48230 202 aa13.49□□□□□ -0.25
VPS39-208ENST00000564994 HDLBPQ00341 1268 aaKnown RBP13.49□□□□□ -0.25
VPS39-208ENST00000564994 ATP2B3Q16720 1220 aa13.49□□□□□ -0.25
VPS39-208ENST00000564994 SUPT20HL1Q3ZLR7 823 aa13.49□□□□□ -0.25
VPS39-208ENST00000564994 CLUAP1Q96AJ1 413 aa13.49□□□□□ -0.25
VPS39-208ENST00000564994 CLMNQ96JQ2 1002 aa13.49□□□□□ -0.25
VPS39-208ENST00000564994 CEP126Q9P2H0 1117 aa13.49□□□□□ -0.25
VPS39-208ENST00000564994 TCP10L2B9ZVM9 353 aa13.48□□□□□ -0.25
VPS39-208ENST00000564994 PPP1R12BO60237 982 aaPredicted RBP13.48□□□□□ -0.25
VPS39-208ENST00000564994 USP2O75604 605 aaPredicted RBP13.48□□□□□ -0.25
VPS39-208ENST00000564994 MTX1Q13505 466 aa13.48□□□□□ -0.25
VPS39-208ENST00000564994 SPRYD7Q5W111 196 aa13.48□□□□□ -0.25
VPS39-208ENST00000564994 TEKT1Q969V4 418 aa13.48□□□□□ -0.25
VPS39-208ENST00000564994 MRIQ9BWK5 157 aa13.48□□□□□ -0.25
VPS39-208ENST00000564994 MCOLN1Q9GZU1 580 aa13.48□□□□□ -0.25
VPS39-208ENST00000564994 SRGAP3O43295 1099 aa13.47□□□□□ -0.25
VPS39-208ENST00000564994 ADORA1P30542 326 aa13.47□□□□□ -0.25
VPS39-208ENST00000564994 PHKA1P46020 1223 aa13.47□□□□□ -0.25
VPS39-208ENST00000564994 CACNB3P54284 484 aa13.47□□□□□ -0.25
VPS39-208ENST00000564994 TNFAIP1Q13829 316 aa13.47□□□□□ -0.25
VPS39-208ENST00000564994 APOBEC3HQ6NTF7 200 aaKnown RBP13.47□□□□□ -0.25
VPS39-208ENST00000564994 TMEM57Q8N5G2 664 aa13.47□□□□□ -0.25
VPS39-208ENST00000564994 ZDHHC15Q96MV8 337 aa13.47□□□□□ -0.25
VPS39-208ENST00000564994 TMEM39BQ9GZU3 492 aa13.47□□□□□ -0.25
VPS39-208ENST00000564994 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.47□□□□□ -0.25
VPS39-208ENST00000564994 SUGT1Q9Y2Z0 365 aa13.47□□□□□ -0.25
VPS39-208ENST00000564994 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.47□□□□□ -0.25
VPS39-208ENST00000564994 MYH2Q9UKX2 1941 aa13.47□□□□□ -0.25
VPS39-208ENST00000564994 TBC1D8O95759 1140 aa13.46□□□□□ -0.25
VPS39-208ENST00000564994 TIMM10P62072 90 aa13.46□□□□□ -0.25
VPS39-208ENST00000564994 DGKZQ13574 1117 aa13.46□□□□□ -0.25
VPS39-208ENST00000564994 ZKSCAN2Q63HK3 967 aa13.46□□□□□ -0.25
VPS39-208ENST00000564994 WDR66Q8TBY9 1149 aa13.46□□□□□ -0.25
VPS39-208ENST00000564994 SLC10A4Q96EP9 437 aa13.46□□□□□ -0.25
VPS39-208ENST00000564994 MAST3O60307 1309 aa13.45□□□□□ -0.26
VPS39-208ENST00000564994 PNMA6EA0A0J9YXQ4 647 aa13.45□□□□□ -0.26
VPS39-208ENST00000564994 UNCXA6NJT0 531 aa13.45□□□□□ -0.26
VPS39-208ENST00000564994 GNAI2P04899 355 aa13.45□□□□□ -0.26
VPS39-208ENST00000564994 PRDX5P30044 214 aa13.45□□□□□ -0.26
VPS39-208ENST00000564994 GJA5P36382 358 aa13.45□□□□□ -0.26
VPS39-208ENST00000564994 TFCP2Q12800 502 aa13.45□□□□□ -0.26
VPS39-208ENST00000564994 CCDC102BQ68D86 513 aa13.45□□□□□ -0.26
VPS39-208ENST00000564994 HHIPL2Q6UWX4 724 aa13.45□□□□□ -0.26
VPS39-208ENST00000564994 WNK4Q96J92 1243 aa13.45□□□□□ -0.26
VPS39-208ENST00000564994 AK9Q5TCS8 1911 aa13.45□□□□□ -0.26
VPS39-208ENST00000564994 ZBTB22O15209 634 aa13.44□□□□□ -0.26
VPS39-208ENST00000564994 ZBTB48P10074 688 aaPredicted RBP13.44□□□□□ -0.26
VPS39-208ENST00000564994 IREB2P48200 963 aaKnown RBP13.44□□□□□ -0.26
VPS39-208ENST00000564994 TNNI2P48788 182 aa13.44□□□□□ -0.26
VPS39-208ENST00000564994 SREBF2Q12772 1141 aa13.44□□□□□ -0.26
VPS39-208ENST00000564994 DIXDC1Q155Q3 683 aa13.44□□□□□ -0.26
VPS39-208ENST00000564994 ANKRD13AQ8IZ07 590 aa13.44□□□□□ -0.26
VPS39-208ENST00000564994 R3HDMLQ9H3Y0 253 aa13.44□□□□□ -0.26
VPS39-208ENST00000564994 ZBED9Q6R2W3 1325 aa13.43□□□□□ -0.26
VPS39-208ENST00000564994 SALL1Q9NSC2 1324 aa13.43□□□□□ -0.26
VPS39-208ENST00000564994 A0A1B0GUL7 405 aa13.43□□□□□ -0.26
VPS39-208ENST00000564994 MANSC4A6NHS7 340 aaPredicted RBP13.43□□□□□ -0.26
VPS39-208ENST00000564994 CCDC85CA6NKD9 419 aa13.43□□□□□ -0.26
VPS39-208ENST00000564994 SEMA3EO15041 775 aa13.43□□□□□ -0.26
VPS39-208ENST00000564994 RLBP1P12271 317 aa13.43□□□□□ -0.26
VPS39-208ENST00000564994 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.43□□□□□ -0.26
VPS39-208ENST00000564994 ZNF296Q8WUU4 475 aaPredicted RBP13.43□□□□□ -0.26
VPS39-208ENST00000564994 XAGE2Q96GT9 111 aa13.43□□□□□ -0.26
VPS39-208ENST00000564994 GNL3LQ9NVN8 582 aaKnown RBP13.43□□□□□ -0.26
VPS39-208ENST00000564994 DENND2AQ9ULE3 1009 aa13.43□□□□□ -0.26
VPS39-208ENST00000564994 DAGLAQ9Y4D2 1042 aa13.43□□□□□ -0.26
VPS39-208ENST00000564994 IGF2BP3O00425 579 aaKnown RBP eCLIP13.42□□□□□ -0.26
VPS39-208ENST00000564994 LDHBP07195 334 aaKnown RBP13.42□□□□□ -0.26
VPS39-208ENST00000564994 RASGRF1Q13972 1273 aa13.42□□□□□ -0.26
VPS39-208ENST00000564994 FKBP1CQ5VVH2 108 aa13.42□□□□□ -0.26
VPS39-208ENST00000564994 FAM83AQ86UY5 434 aa13.42□□□□□ -0.26
VPS39-208ENST00000564994 IFNL1Q8IU54 200 aa13.42□□□□□ -0.26
VPS39-208ENST00000564994 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.42□□□□□ -0.26
VPS39-208ENST00000564994 CNKSR2Q8WXI2 1034 aa13.42□□□□□ -0.26
VPS39-208ENST00000564994 CFHR5Q9BXR6 569 aa13.42□□□□□ -0.26
VPS39-208ENST00000564994 ELP3Q9H9T3 547 aa13.42□□□□□ -0.26
VPS39-208ENST00000564994 GPR25O00155 361 aa13.41□□□□□ -0.26
VPS39-208ENST00000564994 NFIAQ12857 509 aa13.41□□□□□ -0.26
VPS39-208ENST00000564994 VGLL4Q14135 290 aa13.41□□□□□ -0.26
VPS39-208ENST00000564994 CDC42EP5Q6NZY7 148 aa13.41□□□□□ -0.26
VPS39-208ENST00000564994 CTU1Q7Z7A3 348 aaKnown RBP13.41□□□□□ -0.26
VPS39-208ENST00000564994 OPTNQ96CV9 577 aa13.41□□□□□ -0.26
VPS39-208ENST00000564994 C1orf115Q9H7X2 142 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 117.6 ms