RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 MYH2Q9UKX2 1941 aa24.97■■□□□ 1.59
CLN3-212ENST00000564574 IDH1O75874 414 aaKnown RBP24.97■■□□□ 1.59
CLN3-212ENST00000564574 PRDX5P30044 214 aa24.97■■□□□ 1.59
CLN3-212ENST00000564574 GMLQ99445 158 aa24.97■■□□□ 1.59
CLN3-212ENST00000564574 ZFYP08048 801 aaPredicted RBP24.96■■□□□ 1.59
CLN3-212ENST00000564574 DPY19L2Q6NUT2 758 aa24.96■■□□□ 1.59
CLN3-212ENST00000564574 DZIP1Q86YF9 867 aaKnown RBP24.96■■□□□ 1.59
CLN3-212ENST00000564574 MXD3Q9BW11 206 aa24.96■■□□□ 1.59
CLN3-212ENST00000564574 GJA3Q9Y6H8 435 aa24.96■■□□□ 1.59
CLN3-212ENST00000564574 HIP1O00291 1037 aa24.95■■□□□ 1.58
CLN3-212ENST00000564574 GSTO1P78417 241 aa24.95■■□□□ 1.58
CLN3-212ENST00000564574 SLF2Q8IX21 1173 aa24.95■■□□□ 1.58
CLN3-212ENST00000564574 DPF2Q92785 391 aa24.95■■□□□ 1.58
CLN3-212ENST00000564574 NSUN4Q96CB9 384 aaKnown RBP24.95■■□□□ 1.58
CLN3-212ENST00000564574 HDLBPQ00341 1268 aaKnown RBP24.94■■□□□ 1.58
CLN3-212ENST00000564574 MECOMQ03112 1051 aa24.94■■□□□ 1.58
CLN3-212ENST00000564574 GRIK5Q16478 980 aa24.94■■□□□ 1.58
CLN3-212ENST00000564574 MRIQ9BWK5 157 aa24.94■■□□□ 1.58
CLN3-212ENST00000564574 HDAC9Q9UKV0 1011 aa24.94■■□□□ 1.58
CLN3-212ENST00000564574 TTF2Q9UNY4 1162 aaKnown RBP24.94■■□□□ 1.58
CLN3-212ENST00000564574 RNF113AO15541 343 aaKnown RBP24.93■■□□□ 1.58
CLN3-212ENST00000564574 LDHCP07864 332 aa24.93■■□□□ 1.58
CLN3-212ENST00000564574 ADD2P35612 726 aa24.93■■□□□ 1.58
CLN3-212ENST00000564574 UBE3CQ15386 1083 aa24.93■■□□□ 1.58
CLN3-212ENST00000564574 SLC9C2Q5TAH2 1124 aa24.93■■□□□ 1.58
CLN3-212ENST00000564574 KIAA0825Q8IV33 1275 aa24.93■■□□□ 1.58
CLN3-212ENST00000564574 ZBTB12Q9Y330 459 aaPredicted RBP24.93■■□□□ 1.58
CLN3-212ENST00000564574 PDE6AP16499 860 aa24.92■■□□□ 1.58
CLN3-212ENST00000564574 GMPSP49915 693 aaPredicted RBP24.92■■□□□ 1.58
CLN3-212ENST00000564574 NAA16Q6N069 864 aaPredicted RBP24.92■■□□□ 1.58
CLN3-212ENST00000564574 MAGEB6Q8N7X4 407 aa24.92■■□□□ 1.58
CLN3-212ENST00000564574 GLTPD2A6NH11 291 aa24.91■■□□□ 1.58
CLN3-212ENST00000564574 F8W031 263 aaPredicted RBP24.91■■□□□ 1.58
CLN3-212ENST00000564574 USP17L8P0C7I0 530 aa24.91■■□□□ 1.58
CLN3-212ENST00000564574 OGFOD1Q8N543 542 aa24.91■■□□□ 1.58
CLN3-212ENST00000564574 DDNO94850 711 aaPredicted RBP24.9■■□□□ 1.58
CLN3-212ENST00000564574 HHIPL2Q6UWX4 724 aa24.9■■□□□ 1.58
CLN3-212ENST00000564574 FAM163AQ96GL9 167 aaPredicted RBP24.9■■□□□ 1.58
CLN3-212ENST00000564574 SERPINA10Q9UK55 444 aa24.9■■□□□ 1.58
CLN3-212ENST00000564574 WDR90Q96KV7 1748 aa24.89■■□□□ 1.58
CLN3-212ENST00000564574 ZNF532Q9HCE3 1301 aa24.89■■□□□ 1.58
CLN3-212ENST00000564574 SCN4AP35499 1836 aa24.89■■□□□ 1.58
CLN3-212ENST00000564574 TCRBV5S4A2TA0A5A2 114 aa24.89■■□□□ 1.58
CLN3-212ENST00000564574 CDC45O75419 566 aa24.89■■□□□ 1.58
CLN3-212ENST00000564574 CYP7A1P22680 504 aa24.89■■□□□ 1.58
CLN3-212ENST00000564574 ZNF384Q8TF68 577 aa24.89■■□□□ 1.58
CLN3-212ENST00000564574 APPBP2Q92624 585 aa24.89■■□□□ 1.58
CLN3-212ENST00000564574 TEKT1Q969V4 418 aa24.89■■□□□ 1.58
CLN3-212ENST00000564574 L3MBTL3Q96JM7 780 aaPredicted RBP24.89■■□□□ 1.58
CLN3-212ENST00000564574 DIAPH3Q9NSV4 1193 aa24.89■■□□□ 1.58
CLN3-212ENST00000564574 MROH7-TTC4A0A0A0MT08 1334 aa24.88■■□□□ 1.57
CLN3-212ENST00000564574 GAKO14976 1311 aa24.88■■□□□ 1.57
CLN3-212ENST00000564574 ZNF280AP59817 542 aaPredicted RBP24.88■■□□□ 1.57
CLN3-212ENST00000564574 C1QTNF8P60827 252 aa24.88■■□□□ 1.57
CLN3-212ENST00000564574 CASC1Q6TDU7 716 aa24.88■■□□□ 1.57
CLN3-212ENST00000564574 ADAMTSL1Q8N6G6 1762 aa24.88■■□□□ 1.57
CLN3-212ENST00000564574 CHMLP26374 656 aa24.87■■□□□ 1.57
CLN3-212ENST00000564574 CRKP46108 304 aa24.87■■□□□ 1.57
CLN3-212ENST00000564574 DIXDC1Q155Q3 683 aa24.87■■□□□ 1.57
CLN3-212ENST00000564574 ZMYM1Q5SVZ6 1142 aa24.87■■□□□ 1.57
CLN3-212ENST00000564574 HELLSQ9NRZ9 838 aa24.87■■□□□ 1.57
CLN3-212ENST00000564574 GPRC5DQ9NZD1 345 aa24.87■■□□□ 1.57
CLN3-212ENST00000564574 CNOT7Q9UIV1 285 aaKnown RBP24.87■■□□□ 1.57
CLN3-212ENST00000564574 ECM29Q5VYK3 1845 aa24.86■■□□□ 1.57
CLN3-212ENST00000564574 LMOD1P29536 600 aaPredicted RBP24.86■■□□□ 1.57
CLN3-212ENST00000564574 SCNN1DP51172 638 aa24.86■■□□□ 1.57
CLN3-212ENST00000564574 CERS3Q8IU89 383 aa24.86■■□□□ 1.57
CLN3-212ENST00000564574 MICALL2Q8IY33 904 aa24.86■■□□□ 1.57
CLN3-212ENST00000564574 MTMR14Q8NCE2 650 aa24.86■■□□□ 1.57
CLN3-212ENST00000564574 NOL10Q9BSC4 688 aaKnown RBP24.86■■□□□ 1.57
CLN3-212ENST00000564574 H7C1D1 291 aa24.85■■□□□ 1.57
CLN3-212ENST00000564574 NMIQ13287 307 aaPredicted RBP24.85■■□□□ 1.57
CLN3-212ENST00000564574 RUFY2Q8WXA3 655 aa24.85■■□□□ 1.57
CLN3-212ENST00000564574 ZDHHC15Q96MV8 337 aa24.85■■□□□ 1.57
CLN3-212ENST00000564574 DAGLAQ9Y4D2 1042 aa24.85■■□□□ 1.57
CLN3-212ENST00000564574 RAD50Q92878 1312 aa24.85■■□□□ 1.57
CLN3-212ENST00000564574 GPR75-ASB3A0A0A6YYF3 556 aa24.84■■□□□ 1.57
CLN3-212ENST00000564574 BAG3O95817 575 aa24.84■■□□□ 1.57
CLN3-212ENST00000564574 CFAP100Q494V2 611 aa24.84■■□□□ 1.57
CLN3-212ENST00000564574 RBM5P52756 815 aaKnown RBP eCLIP24.83■■□□□ 1.57
CLN3-212ENST00000564574 PPP4CP60510 307 aa24.83■■□□□ 1.57
CLN3-212ENST00000564574 ADGRA1Q86SQ6 560 aa24.83■■□□□ 1.57
CLN3-212ENST00000564574 MYOZ2Q9NPC6 264 aa24.83■■□□□ 1.57
CLN3-212ENST00000564574 MAGEB6P1A0A0J9YX57 407 aa24.82■■□□□ 1.56
CLN3-212ENST00000564574 IQCA1LA6NCM1 817 aa24.82■■□□□ 1.56
CLN3-212ENST00000564574 CHGBP05060 677 aa24.82■■□□□ 1.56
CLN3-212ENST00000564574 BTDP43251 543 aa24.82■■□□□ 1.56
CLN3-212ENST00000564574 DLGAP5Q15398 846 aa24.82■■□□□ 1.56
CLN3-212ENST00000564574 MCMDC2Q4G0Z9 681 aa24.82■■□□□ 1.56
CLN3-212ENST00000564574 CWC27Q6UX04 472 aaKnown RBP24.82■■□□□ 1.56
CLN3-212ENST00000564574 OSBP2Q969R2 916 aa24.82■■□□□ 1.56
CLN3-212ENST00000564574 FAM227BQ96M60 508 aa24.82■■□□□ 1.56
CLN3-212ENST00000564574 A0A0D9SFI3 127 aa24.81■■□□□ 1.56
CLN3-212ENST00000564574 PLCG2P16885 1265 aa24.81■■□□□ 1.56
CLN3-212ENST00000564574 MFAP1P55081 439 aaKnown RBP24.81■■□□□ 1.56
CLN3-212ENST00000564574 SLFNL1Q499Z3 407 aa24.81■■□□□ 1.56
CLN3-212ENST00000564574 AIDAQ96BJ3 306 aa24.81■■□□□ 1.56
CLN3-212ENST00000564574 PUS7LQ9H0K6 701 aaKnown RBP24.81■■□□□ 1.56
CLN3-212ENST00000564574 HACL1Q9UJ83 578 aa24.81■■□□□ 1.56
CLN3-212ENST00000564574 CDK5RAP2Q96SN8 1893 aa24.81■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms