RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 ENGASEQ8NFI3 743 aa15.72■□□□□ 0.11
CLK3-215ENST00000564353 NCOA7Q8NI08 942 aa15.72■□□□□ 0.11
CLK3-215ENST00000564353 CPDO75976 1380 aa15.72■□□□□ 0.11
CLK3-215ENST00000564353 GLI3P10071 1580 aa15.72■□□□□ 0.11
CLK3-215ENST00000564353 ZNF532Q9HCE3 1301 aa15.72■□□□□ 0.11
CLK3-215ENST00000564353 MRPS27Q92552 414 aaKnown RBP15.72■□□□□ 0.11
CLK3-215ENST00000564353 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.72■□□□□ 0.11
CLK3-215ENST00000564353 V9GYY5 206 aaPredicted RBP15.72■□□□□ 0.11
CLK3-215ENST00000564353 RFX7Q2KHR2 1363 aa15.71■□□□□ 0.11
CLK3-215ENST00000564353 CBX1P83916 185 aa15.71■□□□□ 0.11
CLK3-215ENST00000564353 NFXL1Q6ZNB6 911 aa15.71■□□□□ 0.11
CLK3-215ENST00000564353 NLRP10Q86W26 655 aa15.71■□□□□ 0.11
CLK3-215ENST00000564353 PRIMPOLQ96LW4 560 aa15.71■□□□□ 0.11
CLK3-215ENST00000564353 TNNT1P13805 278 aa15.71■□□□□ 0.1
CLK3-215ENST00000564353 GNL2Q13823 731 aaKnown RBP15.71■□□□□ 0.1
CLK3-215ENST00000564353 LINC00301Q8NCQ3 95 aa15.71■□□□□ 0.1
CLK3-215ENST00000564353 CARD10Q9BWT7 1032 aa15.71■□□□□ 0.1
CLK3-215ENST00000564353 CTNNA3Q9UI47 895 aa15.71■□□□□ 0.1
CLK3-215ENST00000564353 RIPOR2Q9Y4F9 1068 aa15.71■□□□□ 0.1
CLK3-215ENST00000564353 KCPQ6ZWJ8 1503 aa15.7■□□□□ 0.1
CLK3-215ENST00000564353 COL5A2P05997 1499 aaPredicted RBP15.7■□□□□ 0.1
CLK3-215ENST00000564353 PCCAP05165 728 aaPredicted RBP15.7■□□□□ 0.1
CLK3-215ENST00000564353 ATP2B1P20020 1258 aa15.7■□□□□ 0.1
CLK3-215ENST00000564353 CDC27P30260 824 aa15.7■□□□□ 0.1
CLK3-215ENST00000564353 CLIC6Q96NY7 704 aa15.7■□□□□ 0.1
CLK3-215ENST00000564353 STARD3NLO95772 234 aa15.7■□□□□ 0.1
CLK3-215ENST00000564353 TRDNQ13061 729 aa15.7■□□□□ 0.1
CLK3-215ENST00000564353 SYNE3Q6ZMZ3 975 aa15.7■□□□□ 0.1
CLK3-215ENST00000564353 FMR1NBQ8N0W7 255 aaPredicted RBP15.7■□□□□ 0.1
CLK3-215ENST00000564353 FBXO18Q8NFZ0 1043 aa15.7■□□□□ 0.1
CLK3-215ENST00000564353 ANKRD18BA2A2Z9 1011 aa15.69■□□□□ 0.1
CLK3-215ENST00000564353 WTIPA6NIX2 430 aaPredicted RBP15.69■□□□□ 0.1
CLK3-215ENST00000564353 SMIM22K7EJ46 135 aa15.69■□□□□ 0.1
CLK3-215ENST00000564353 SPTLC2O15270 562 aa15.69■□□□□ 0.1
CLK3-215ENST00000564353 PRKAB2O43741 272 aa15.69■□□□□ 0.1
CLK3-215ENST00000564353 WDHD1O75717 1129 aaPredicted RBP15.69■□□□□ 0.1
CLK3-215ENST00000564353 SMC2O95347 1197 aa15.69■□□□□ 0.1
CLK3-215ENST00000564353 ZRSR1Q15695 479 aaKnown RBP15.69■□□□□ 0.1
CLK3-215ENST00000564353 MYSM1Q5VVJ2 828 aa15.69■□□□□ 0.1
CLK3-215ENST00000564353 CCDC102BQ68D86 513 aa15.69■□□□□ 0.1
CLK3-215ENST00000564353 SEC31BQ9NQW1 1179 aa15.69■□□□□ 0.1
CLK3-215ENST00000564353 NEDD4P46934 1319 aa15.69■□□□□ 0.1
CLK3-215ENST00000564353 CTSWP56202 376 aa15.69■□□□□ 0.1
CLK3-215ENST00000564353 PPP4R3BQ5MIZ7 849 aa15.69■□□□□ 0.1
CLK3-215ENST00000564353 NPHP1O15259 732 aa15.68■□□□□ 0.1
CLK3-215ENST00000564353 METAP2P50579 478 aaKnown RBP eCLIP15.68■□□□□ 0.1
CLK3-215ENST00000564353 GIGYF2Q6Y7W6 1299 aaKnown RBP15.68■□□□□ 0.1
CLK3-215ENST00000564353 MIGA1Q8NAN2 632 aa15.68■□□□□ 0.1
CLK3-215ENST00000564353 ACSBG1Q96GR2 724 aa15.68■□□□□ 0.1
CLK3-215ENST00000564353 ALG1Q9BT22 464 aa15.68■□□□□ 0.1
CLK3-215ENST00000564353 ARMT1Q9H993 441 aa15.68■□□□□ 0.1
CLK3-215ENST00000564353 MAP3K15Q6ZN16 1313 aa15.68■□□□□ 0.1
CLK3-215ENST00000564353 SKILP12757 684 aa15.68■□□□□ 0.1
CLK3-215ENST00000564353 NKX1-1Q15270 411 aaPredicted RBP15.68■□□□□ 0.1
CLK3-215ENST00000564353 LRRC8AQ8IWT6 810 aa15.68■□□□□ 0.1
CLK3-215ENST00000564353 MROH7-TTC4A0A0A0MT08 1334 aa15.68■□□□□ 0.1
CLK3-215ENST00000564353 LAMA4Q16363 1823 aa15.68■□□□□ 0.1
CLK3-215ENST00000564353 CCDC69A6NI79 296 aa15.67■□□□□ 0.1
CLK3-215ENST00000564353 CSF1RP07333 972 aa15.67■□□□□ 0.1
CLK3-215ENST00000564353 LMOD1P29536 600 aaPredicted RBP15.67■□□□□ 0.1
CLK3-215ENST00000564353 ADD2P35612 726 aa15.67■□□□□ 0.1
CLK3-215ENST00000564353 SMIM5Q71RC9 77 aa15.67■□□□□ 0.1
CLK3-215ENST00000564353 CEP57L1Q8IYX8 460 aa15.67■□□□□ 0.1
CLK3-215ENST00000564353 MAGEB6Q8N7X4 407 aa15.67■□□□□ 0.1
CLK3-215ENST00000564353 AIDAQ96BJ3 306 aa15.67■□□□□ 0.1
CLK3-215ENST00000564353 CHMP4CQ96CF2 233 aa15.67■□□□□ 0.1
CLK3-215ENST00000564353 ZNF202O95125 648 aa15.67■□□□□ 0.1
CLK3-215ENST00000564353 TPM3P06753 285 aa15.67■□□□□ 0.1
CLK3-215ENST00000564353 PDE6AP16499 860 aa15.67■□□□□ 0.1
CLK3-215ENST00000564353 GOLGA8FQ08AF8 430 aa15.67■□□□□ 0.1
CLK3-215ENST00000564353 GOLGA8DPQ0D2H9 430 aa15.67■□□□□ 0.1
CLK3-215ENST00000564353 DHX37Q8IY37 1157 aaKnown RBP15.67■□□□□ 0.1
CLK3-215ENST00000564353 IPO4Q8TEX9 1081 aaKnown RBP15.67■□□□□ 0.1
CLK3-215ENST00000564353 ANO10Q9NW15 660 aa15.67■□□□□ 0.1
CLK3-215ENST00000564353 RTEL1Q9NZ71 1219 aa15.67■□□□□ 0.1
CLK3-215ENST00000564353 RIC1Q4ADV7 1423 aa15.67■□□□□ 0.1
CLK3-215ENST00000564353 PFKFB1P16118 471 aa15.67■□□□□ 0.1
CLK3-215ENST00000564353 KIF23Q02241 960 aaPredicted RBP15.67■□□□□ 0.1
CLK3-215ENST00000564353 ADALQ6DHV7 355 aa15.67■□□□□ 0.1
CLK3-215ENST00000564353 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.67■□□□□ 0.1
CLK3-215ENST00000564353 UBN2Q6ZU65 1347 aa15.67■□□□□ 0.1
CLK3-215ENST00000564353 MBD4O95243 580 aa15.66■□□□□ 0.1
CLK3-215ENST00000564353 ZFYP08048 801 aaPredicted RBP15.66■□□□□ 0.1
CLK3-215ENST00000564353 U2AF2P26368 475 aaKnown RBP eCLIP15.66■□□□□ 0.1
CLK3-215ENST00000564353 DZIP3Q86Y13 1208 aaKnown RBP15.66■□□□□ 0.1
CLK3-215ENST00000564353 IFNKQ9P0W0 207 aa15.66■□□□□ 0.1
CLK3-215ENST00000564353 TACC3Q9Y6A5 838 aa15.66■□□□□ 0.1
CLK3-215ENST00000564353 TJP1Q07157 1748 aa15.66■□□□□ 0.1
CLK3-215ENST00000564353 VGLL3A8MV65 326 aa15.66■□□□□ 0.1
CLK3-215ENST00000564353 PDE8BO95263 885 aa15.66■□□□□ 0.1
CLK3-215ENST00000564353 ANO1Q5XXA6 986 aa15.66■□□□□ 0.1
CLK3-215ENST00000564353 VPS37DQ86XT2 251 aa15.66■□□□□ 0.1
CLK3-215ENST00000564353 SLC26A6Q9BXS9 759 aa15.66■□□□□ 0.1
CLK3-215ENST00000564353 ANGEL1Q9UNK9 670 aaKnown RBP15.66■□□□□ 0.1
CLK3-215ENST00000564353 hCG_1642624A0A1W2PR95 340 aa15.65■□□□□ 0.1
CLK3-215ENST00000564353 IGSF3O75054 1194 aa15.65■□□□□ 0.1
CLK3-215ENST00000564353 ATP1A3P13637 1013 aa15.65■□□□□ 0.1
CLK3-215ENST00000564353 GUCY1A2P33402 732 aa15.65■□□□□ 0.1
CLK3-215ENST00000564353 KCNQ4P56696 695 aa15.65■□□□□ 0.1
CLK3-215ENST00000564353 LRRFIP1Q32MZ4 808 aaKnown RBP15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms