RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 COL1A1P02452 1464 aaPredicted RBP16.52■□□□□ 0.23
CLK3-213ENST00000563842 HMMRO75330 724 aa16.51■□□□□ 0.23
CLK3-213ENST00000563842 PHKA1P46020 1223 aa16.51■□□□□ 0.23
CLK3-213ENST00000563842 CRKP46108 304 aa16.51■□□□□ 0.23
CLK3-213ENST00000563842 HSP90AB4PQ58FF6 505 aa16.51■□□□□ 0.23
CLK3-213ENST00000563842 TEKT1Q969V4 418 aa16.51■□□□□ 0.23
CLK3-213ENST00000563842 PRMT6Q96LA8 375 aaPredicted RBP16.51■□□□□ 0.23
CLK3-213ENST00000563842 PPP2R3BQ9Y5P8 575 aa16.51■□□□□ 0.23
CLK3-213ENST00000563842 MYH2Q9UKX2 1941 aa16.51■□□□□ 0.23
CLK3-213ENST00000563842 WDR33Q9C0J8 1336 aaKnown RBP16.5■□□□□ 0.23
CLK3-213ENST00000563842 ADORA1P30542 326 aa16.5■□□□□ 0.23
CLK3-213ENST00000563842 HUNKP57058 714 aa16.5■□□□□ 0.23
CLK3-213ENST00000563842 TNFAIP1Q13829 316 aa16.5■□□□□ 0.23
CLK3-213ENST00000563842 ERC1Q8IUD2 1116 aa16.5■□□□□ 0.23
CLK3-213ENST00000563842 ZBTB40Q9NUA8 1239 aa16.5■□□□□ 0.23
CLK3-213ENST00000563842 PAPPA2Q9BXP8 1791 aa16.5■□□□□ 0.23
CLK3-213ENST00000563842 PDS5AQ29RF7 1337 aaKnown RBP16.49■□□□□ 0.23
CLK3-213ENST00000563842 SALL1Q9NSC2 1324 aa16.49■□□□□ 0.23
CLK3-213ENST00000563842 DLK2Q6UY11 383 aa16.49■□□□□ 0.23
CLK3-213ENST00000563842 CAPNS2Q96L46 248 aa16.49■□□□□ 0.23
CLK3-213ENST00000563842 LDHBP07195 334 aaKnown RBP16.48■□□□□ 0.23
CLK3-213ENST00000563842 UQCRFS1P1P0C7P4 283 aa16.48■□□□□ 0.23
CLK3-213ENST00000563842 SPTY2D1Q68D10 685 aaPredicted RBP16.48■□□□□ 0.23
CLK3-213ENST00000563842 CYP4F22Q6NT55 531 aa16.48■□□□□ 0.23
CLK3-213ENST00000563842 HHIPL2Q6UWX4 724 aa16.48■□□□□ 0.23
CLK3-213ENST00000563842 ZDHHC15Q96MV8 337 aa16.48■□□□□ 0.23
CLK3-213ENST00000563842 DEFB129Q9H1M3 183 aa16.48■□□□□ 0.23
CLK3-213ENST00000563842 VEZTQ9HBM0 779 aa16.48■□□□□ 0.23
CLK3-213ENST00000563842 AK9Q5TCS8 1911 aa16.48■□□□□ 0.23
CLK3-213ENST00000563842 CLRN2A0PK11 232 aa16.47■□□□□ 0.23
CLK3-213ENST00000563842 MAP2K2P36507 400 aa16.47■□□□□ 0.23
CLK3-213ENST00000563842 TNNI2P48788 182 aa16.47■□□□□ 0.23
CLK3-213ENST00000563842 MAP2K1Q02750 393 aaPredicted RBP16.47■□□□□ 0.23
CLK3-213ENST00000563842 SPDYE2Q495Y8 402 aa16.47■□□□□ 0.23
CLK3-213ENST00000563842 TNNI3KQ59H18 835 aa16.47■□□□□ 0.23
CLK3-213ENST00000563842 CCDC158Q5M9N0 1113 aa16.47■□□□□ 0.23
CLK3-213ENST00000563842 RGMBQ6NW40 437 aa16.47■□□□□ 0.23
CLK3-213ENST00000563842 CCDC102AQ96A19 550 aa16.47■□□□□ 0.23
CLK3-213ENST00000563842 TMOD2Q9NZR1 351 aa16.47■□□□□ 0.23
CLK3-213ENST00000563842 ZNF70Q9UC06 446 aaPredicted RBP16.47■□□□□ 0.23
CLK3-213ENST00000563842 SCAF8Q9UPN6 1271 aaKnown RBP16.47■□□□□ 0.23
CLK3-213ENST00000563842 PCDHAC2Q9Y5I4 1007 aa16.47■□□□□ 0.23
CLK3-213ENST00000563842 FPGT-TNNI3KV9GXZ4 949 aa16.47■□□□□ 0.23
CLK3-213ENST00000563842 GRM1Q13255 1194 aa16.46■□□□□ 0.23
CLK3-213ENST00000563842 RASGRF1Q13972 1273 aa16.46■□□□□ 0.23
CLK3-213ENST00000563842 TTLL12Q14166 644 aaPredicted RBP16.46■□□□□ 0.23
CLK3-213ENST00000563842 GRIK5Q16478 980 aa16.46■□□□□ 0.23
CLK3-213ENST00000563842 SUPT20HL1Q3ZLR7 823 aa16.46■□□□□ 0.23
CLK3-213ENST00000563842 SLF2Q8IX21 1173 aa16.46■□□□□ 0.23
CLK3-213ENST00000563842 TDRD3Q9H7E2 651 aaKnown RBP16.46■□□□□ 0.23
CLK3-213ENST00000563842 HSPA1AP0DMV8 641 aaKnown RBP16.45■□□□□ 0.22
CLK3-213ENST00000563842 HSPA1BP0DMV9 641 aaKnown RBP16.45■□□□□ 0.22
CLK3-213ENST00000563842 ARID4AP29374 1257 aaPredicted RBP16.45■□□□□ 0.22
CLK3-213ENST00000563842 NOGQ13253 232 aa16.45■□□□□ 0.22
CLK3-213ENST00000563842 C20orf194Q5TEA3 1177 aa16.45■□□□□ 0.22
CLK3-213ENST00000563842 PRAMEF18Q5VWM3 479 aa16.45■□□□□ 0.22
CLK3-213ENST00000563842 ARMC9Q7Z3E5 817 aa16.45■□□□□ 0.22
CLK3-213ENST00000563842 AIDAQ96BJ3 306 aa16.45■□□□□ 0.22
CLK3-213ENST00000563842 ABCF2Q9UG63 623 aa16.45■□□□□ 0.22
CLK3-213ENST00000563842 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.45■□□□□ 0.22
CLK3-213ENST00000563842 AKAP11Q9UKA4 1901 aa16.45■□□□□ 0.22
CLK3-213ENST00000563842 THSD7BQ9C0I4 1608 aa16.45■□□□□ 0.22
CLK3-213ENST00000563842 PPP1R12BO60237 982 aaPredicted RBP16.44■□□□□ 0.22
CLK3-213ENST00000563842 PRDX5P30044 214 aa16.44■□□□□ 0.22
CLK3-213ENST00000563842 ZNF157P51786 506 aaPredicted RBP16.44■□□□□ 0.22
CLK3-213ENST00000563842 TTC39AQ5SRH9 613 aa16.44■□□□□ 0.22
CLK3-213ENST00000563842 SPATA5Q8NB90 893 aa16.44■□□□□ 0.22
CLK3-213ENST00000563842 BEGAINQ9BUH8 593 aa16.44■□□□□ 0.22
CLK3-213ENST00000563842 EXOC6BQ9Y2D4 811 aa16.44■□□□□ 0.22
CLK3-213ENST00000563842 RAB11FIP3O75154 756 aa16.43■□□□□ 0.22
CLK3-213ENST00000563842 RASA3Q14644 834 aa16.43■□□□□ 0.22
CLK3-213ENST00000563842 FKBP1CQ5VVH2 108 aa16.43■□□□□ 0.22
CLK3-213ENST00000563842 ERICH6Q7L0X2 663 aa16.43■□□□□ 0.22
CLK3-213ENST00000563842 DZIP1Q86YF9 867 aaKnown RBP16.43■□□□□ 0.22
CLK3-213ENST00000563842 HMG20BQ9P0W2 317 aa16.43■□□□□ 0.22
CLK3-213ENST00000563842 UNCXA6NJT0 531 aa16.42■□□□□ 0.22
CLK3-213ENST00000563842 RRP1P56182 461 aaKnown RBP16.42■□□□□ 0.22
CLK3-213ENST00000563842 APOBEC3HQ6NTF7 200 aaKnown RBP16.42■□□□□ 0.22
CLK3-213ENST00000563842 KIF1BPQ96EK5 621 aa16.42■□□□□ 0.22
CLK3-213ENST00000563842 ZNF512BQ96KM6 892 aaPredicted RBP16.42■□□□□ 0.22
CLK3-213ENST00000563842 DBNDD2Q9BQY9 259 aa16.42■□□□□ 0.22
CLK3-213ENST00000563842 WBP1LQ9NX94 342 aa16.42■□□□□ 0.22
CLK3-213ENST00000563842 TCP10L2B9ZVM9 353 aa16.41■□□□□ 0.22
CLK3-213ENST00000563842 IGSF3O75054 1194 aa16.41■□□□□ 0.22
CLK3-213ENST00000563842 LDHCP07864 332 aa16.41■□□□□ 0.22
CLK3-213ENST00000563842 GSTO1P78417 241 aa16.41■□□□□ 0.22
CLK3-213ENST00000563842 FAM83AQ86UY5 434 aa16.41■□□□□ 0.22
CLK3-213ENST00000563842 REM2Q8IYK8 340 aaPredicted RBP16.41■□□□□ 0.22
CLK3-213ENST00000563842 CLASRPQ8N2M8 674 aaKnown RBP16.41■□□□□ 0.22
CLK3-213ENST00000563842 RHPN1Q8TCX5 695 aa16.41■□□□□ 0.22
CLK3-213ENST00000563842 HOOK2Q96ED9 719 aa16.41■□□□□ 0.22
CLK3-213ENST00000563842 ANGEL1Q9UNK9 670 aaKnown RBP16.41■□□□□ 0.22
CLK3-213ENST00000563842 DAGLAQ9Y4D2 1042 aa16.41■□□□□ 0.22
CLK3-213ENST00000563842 AOX1Q06278 1338 aa16.41■□□□□ 0.22
CLK3-213ENST00000563842 MYO5AQ9Y4I1 1855 aaKnown RBP16.4■□□□□ 0.22
CLK3-213ENST00000563842 UBE2Q2LH0YL09 131 aa16.4■□□□□ 0.22
CLK3-213ENST00000563842 AOC2O75106 756 aa16.4■□□□□ 0.22
CLK3-213ENST00000563842 SLC10A3P09131 477 aa16.4■□□□□ 0.22
CLK3-213ENST00000563842 MCAMP43121 646 aa16.4■□□□□ 0.22
CLK3-213ENST00000563842 DIXDC1Q155Q3 683 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms