RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 DCAF8Q5TAQ9 597 aa12.21□□□□□ -0.45
SMG1-208ENST00000563448 PODNQ7Z5L7 613 aa12.21□□□□□ -0.45
SMG1-208ENST00000563448 ADGRA1Q86SQ6 560 aa12.21□□□□□ -0.45
SMG1-208ENST00000563448 ZGPATQ8N5A5 531 aaKnown RBP12.21□□□□□ -0.45
SMG1-208ENST00000563448 MAP4K1Q92918 833 aa12.21□□□□□ -0.45
SMG1-208ENST00000563448 NSUN4Q96CB9 384 aaKnown RBP12.21□□□□□ -0.45
SMG1-208ENST00000563448 PPIP5K2O43314 1243 aa12.21□□□□□ -0.46
SMG1-208ENST00000563448 ECE2O60344 883 aa12.21□□□□□ -0.46
SMG1-208ENST00000563448 CYP7A1P22680 504 aa12.21□□□□□ -0.46
SMG1-208ENST00000563448 SPTY2D1Q68D10 685 aaPredicted RBP12.21□□□□□ -0.46
SMG1-208ENST00000563448 KIF2CQ99661 725 aa12.21□□□□□ -0.46
SMG1-208ENST00000563448 KCNQ5Q9NR82 932 aa12.21□□□□□ -0.46
SMG1-208ENST00000563448 GPAA1O43292 621 aa12.2□□□□□ -0.46
SMG1-208ENST00000563448 HSPA4P34932 840 aa12.2□□□□□ -0.46
SMG1-208ENST00000563448 VPS53Q5VIR6 699 aa12.2□□□□□ -0.46
SMG1-208ENST00000563448 NAA16Q6N069 864 aaPredicted RBP12.2□□□□□ -0.46
SMG1-208ENST00000563448 ZNF277Q9NRM2 450 aaPredicted RBP12.2□□□□□ -0.46
SMG1-208ENST00000563448 PALD1Q9ULE6 856 aa12.2□□□□□ -0.46
SMG1-208ENST00000563448 LDHBP07195 334 aaKnown RBP12.2□□□□□ -0.46
SMG1-208ENST00000563448 MFSD14BQ5SR56 506 aa12.2□□□□□ -0.46
SMG1-208ENST00000563448 TTLL5Q6EMB2 1281 aa12.2□□□□□ -0.46
SMG1-208ENST00000563448 TBC1D22AQ8WUA7 517 aa12.2□□□□□ -0.46
SMG1-208ENST00000563448 FBXW7Q969H0 707 aa12.2□□□□□ -0.46
SMG1-208ENST00000563448 VPS33BQ9H267 617 aa12.2□□□□□ -0.46
SMG1-208ENST00000563448 RBM8AQ9Y5S9 174 aaKnown RBP12.2□□□□□ -0.46
SMG1-208ENST00000563448 LAMB1P07942 1786 aa12.19□□□□□ -0.46
SMG1-208ENST00000563448 YDJCA8MPS7 323 aa12.19□□□□□ -0.46
SMG1-208ENST00000563448 NFKBIEO00221 500 aa12.19□□□□□ -0.46
SMG1-208ENST00000563448 FOXP2O15409 715 aa12.19□□□□□ -0.46
SMG1-208ENST00000563448 IGSF3O75054 1194 aa12.19□□□□□ -0.46
SMG1-208ENST00000563448 HSPD1P10809 573 aaKnown RBP12.19□□□□□ -0.46
SMG1-208ENST00000563448 NECTIN1Q15223 517 aa12.19□□□□□ -0.46
SMG1-208ENST00000563448 CERS5Q8N5B7 392 aa12.19□□□□□ -0.46
SMG1-208ENST00000563448 DSCC1Q9BVC3 393 aa12.19□□□□□ -0.46
SMG1-208ENST00000563448 MXD3Q9BW11 206 aa12.19□□□□□ -0.46
SMG1-208ENST00000563448 NAV1Q8NEY1 1877 aa12.19□□□□□ -0.46
SMG1-208ENST00000563448 MYH1P12882 1939 aa12.19□□□□□ -0.46
SMG1-208ENST00000563448 MCCP23508 829 aa12.18□□□□□ -0.46
SMG1-208ENST00000563448 IARSP41252 1262 aaKnown RBP12.18□□□□□ -0.46
SMG1-208ENST00000563448 LCORLQ8N3X6 602 aa12.18□□□□□ -0.46
SMG1-208ENST00000563448 MIGA1Q8NAN2 632 aa12.18□□□□□ -0.46
SMG1-208ENST00000563448 AIDAQ96BJ3 306 aa12.18□□□□□ -0.46
SMG1-208ENST00000563448 STRBPQ96SI9 672 aaKnown RBP12.18□□□□□ -0.46
SMG1-208ENST00000563448 SYT17Q9BSW7 474 aa12.18□□□□□ -0.46
SMG1-208ENST00000563448 TAOK3Q9H2K8 898 aa12.18□□□□□ -0.46
SMG1-208ENST00000563448 ARMT1Q9H993 441 aa12.18□□□□□ -0.46
SMG1-208ENST00000563448 MBD4O95243 580 aa12.18□□□□□ -0.46
SMG1-208ENST00000563448 TMED8Q6PL24 325 aaPredicted RBP12.18□□□□□ -0.46
SMG1-208ENST00000563448 DZIP1Q86YF9 867 aaKnown RBP12.18□□□□□ -0.46
SMG1-208ENST00000563448 LARGE2Q8N3Y3 721 aa12.18□□□□□ -0.46
SMG1-208ENST00000563448 KCNB2Q92953 911 aa12.18□□□□□ -0.46
SMG1-208ENST00000563448 MAGEB6P1A0A0J9YX57 407 aa12.17□□□□□ -0.46
SMG1-208ENST00000563448 ANP32AP39687 249 aaKnown RBP12.17□□□□□ -0.46
SMG1-208ENST00000563448 DYNLL1P63167 89 aaKnown RBP12.17□□□□□ -0.46
SMG1-208ENST00000563448 DACT2Q5SW24 774 aa12.17□□□□□ -0.46
SMG1-208ENST00000563448 STRIP1Q5VSL9 837 aa12.17□□□□□ -0.46
SMG1-208ENST00000563448 RASEFQ8IZ41 740 aa12.17□□□□□ -0.46
SMG1-208ENST00000563448 IL17RAQ96F46 866 aa12.17□□□□□ -0.46
SMG1-208ENST00000563448 RIOK1Q9BRS2 568 aaKnown RBP12.17□□□□□ -0.46
SMG1-208ENST00000563448 U3KPZ7 1027 aaPredicted RBP12.17□□□□□ -0.46
SMG1-208ENST00000563448 LTBP3Q9NS15 1303 aa12.17□□□□□ -0.46
SMG1-208ENST00000563448 USP17L3A6NCW0 530 aa12.16□□□□□ -0.46
SMG1-208ENST00000563448 USP17L4A6NCW7 530 aa12.16□□□□□ -0.46
SMG1-208ENST00000563448 FKBP1AP62942 108 aaKnown RBP12.16□□□□□ -0.46
SMG1-208ENST00000563448 RASSF7Q02833 373 aa12.16□□□□□ -0.46
SMG1-208ENST00000563448 DIXDC1Q155Q3 683 aa12.16□□□□□ -0.46
SMG1-208ENST00000563448 CREB3L3Q68CJ9 461 aa12.16□□□□□ -0.46
SMG1-208ENST00000563448 USP17L1Q7RTZ2 530 aa12.16□□□□□ -0.46
SMG1-208ENST00000563448 SUGT1Q9Y2Z0 365 aa12.16□□□□□ -0.46
SMG1-208ENST00000563448 SNX14Q9Y5W7 946 aa12.16□□□□□ -0.46
SMG1-208ENST00000563448 SLC27A2O14975 620 aa12.16□□□□□ -0.46
SMG1-208ENST00000563448 PRKAB2O43741 272 aa12.16□□□□□ -0.46
SMG1-208ENST00000563448 PRELPP51888 382 aa12.16□□□□□ -0.46
SMG1-208ENST00000563448 ANAPC15P60006 121 aa12.16□□□□□ -0.46
SMG1-208ENST00000563448 GSTO1P78417 241 aa12.16□□□□□ -0.46
SMG1-208ENST00000563448 AATFQ9NY61 560 aaKnown RBP eCLIP12.16□□□□□ -0.46
SMG1-208ENST00000563448 MROH7-TTC4A0A0A0MT08 1334 aa12.15□□□□□ -0.46
SMG1-208ENST00000563448 PATL2C9JE40 543 aaKnown RBP12.15□□□□□ -0.46
SMG1-208ENST00000563448 TIAM2Q8IVF5 1701 aa12.15□□□□□ -0.46
SMG1-208ENST00000563448 DDX60LQ5H9U9 1706 aaKnown RBP12.15□□□□□ -0.47
SMG1-208ENST00000563448 GSG1L2A8MUP6 293 aa12.15□□□□□ -0.47
SMG1-208ENST00000563448 F8W031 263 aaPredicted RBP12.15□□□□□ -0.47
SMG1-208ENST00000563448 FGAP02671 866 aa12.15□□□□□ -0.47
SMG1-208ENST00000563448 LDHCP07864 332 aa12.15□□□□□ -0.47
SMG1-208ENST00000563448 NIM1KQ8IY84 436 aa12.15□□□□□ -0.47
SMG1-208ENST00000563448 ZNRF3Q9ULT6 936 aa12.15□□□□□ -0.47
SMG1-208ENST00000563448 TAF6LQ9Y6J9 622 aa12.15□□□□□ -0.47
SMG1-208ENST00000563448 SLC4A4Q9Y6R1 1079 aa12.15□□□□□ -0.47
SMG1-208ENST00000563448 GAKO14976 1311 aa12.14□□□□□ -0.47
SMG1-208ENST00000563448 CYP21A2P08686 494 aa12.14□□□□□ -0.47
SMG1-208ENST00000563448 GNAT2P19087 354 aa12.14□□□□□ -0.47
SMG1-208ENST00000563448 IFNL3Q8IZI9 196 aa12.14□□□□□ -0.47
SMG1-208ENST00000563448 FAM163AQ96GL9 167 aaPredicted RBP12.14□□□□□ -0.47
SMG1-208ENST00000563448 EPB41L4AQ9HCS5 686 aaPredicted RBP12.14□□□□□ -0.47
SMG1-208ENST00000563448 TTF2Q9UNY4 1162 aaKnown RBP12.14□□□□□ -0.47
SMG1-208ENST00000563448 RAD17O75943 681 aa12.13□□□□□ -0.47
SMG1-208ENST00000563448 APPP05067 770 aa12.13□□□□□ -0.47
SMG1-208ENST00000563448 PPP4CP60510 307 aa12.13□□□□□ -0.47
SMG1-208ENST00000563448 RABEP1Q15276 862 aa12.13□□□□□ -0.47
SMG1-208ENST00000563448 ALX1Q15699 326 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms