RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 RFX5P48382 616 aaPredicted RBP19.75■□□□□ 0.75
CLK3-211ENST00000563297 BCAMP50895 628 aa19.75■□□□□ 0.75
CLK3-211ENST00000563297 CHAF1AQ13111 956 aaPredicted RBP19.75■□□□□ 0.75
CLK3-211ENST00000563297 TNFAIP1Q13829 316 aa19.75■□□□□ 0.75
CLK3-211ENST00000563297 IFNL1Q8IU54 200 aa19.75■□□□□ 0.75
CLK3-211ENST00000563297 FGFR2P21802 821 aa19.74■□□□□ 0.75
CLK3-211ENST00000563297 TBC1D22AQ8WUA7 517 aa19.74■□□□□ 0.75
CLK3-211ENST00000563297 TEPSINQ96N21 525 aa19.74■□□□□ 0.75
CLK3-211ENST00000563297 SMC4Q9NTJ3 1288 aa19.74■□□□□ 0.75
CLK3-211ENST00000563297 HPS5Q9UPZ3 1129 aa19.74■□□□□ 0.75
CLK3-211ENST00000563297 TCP10L2B9ZVM9 353 aa19.73■□□□□ 0.75
CLK3-211ENST00000563297 FKTNO75072 461 aa19.73■□□□□ 0.75
CLK3-211ENST00000563297 GJA5P36382 358 aa19.73■□□□□ 0.75
CLK3-211ENST00000563297 SOX10P56693 466 aa19.73■□□□□ 0.75
CLK3-211ENST00000563297 HDLBPQ00341 1268 aaKnown RBP19.73■□□□□ 0.75
CLK3-211ENST00000563297 CDAN1Q8IWY9 1227 aa19.73■□□□□ 0.75
CLK3-211ENST00000563297 ANKRD13AQ8IZ07 590 aa19.73■□□□□ 0.75
CLK3-211ENST00000563297 MRIQ9BWK5 157 aa19.73■□□□□ 0.75
CLK3-211ENST00000563297 EYA2O00167 538 aa19.72■□□□□ 0.75
CLK3-211ENST00000563297 IGF2BP3O00425 579 aaKnown RBP eCLIP19.72■□□□□ 0.75
CLK3-211ENST00000563297 IFIT1P09914 478 aaKnown RBP19.72■□□□□ 0.75
CLK3-211ENST00000563297 PUM3Q15397 648 aaKnown RBP19.72■□□□□ 0.75
CLK3-211ENST00000563297 ARAP2Q8WZ64 1704 aa19.71■□□□□ 0.75
CLK3-211ENST00000563297 ATG9AQ7Z3C6 839 aa19.71■□□□□ 0.75
CLK3-211ENST00000563297 TMEM39BQ9GZU3 492 aa19.71■□□□□ 0.75
CLK3-211ENST00000563297 NOB1Q9ULX3 412 aaKnown RBP19.71■□□□□ 0.75
CLK3-211ENST00000563297 KIF16BQ96L93 1317 aa19.71■□□□□ 0.75
CLK3-211ENST00000563297 CT47B1P0C2W7 299 aaPredicted RBP19.7■□□□□ 0.74
CLK3-211ENST00000563297 TNNI2P48788 182 aa19.7■□□□□ 0.74
CLK3-211ENST00000563297 TEKT1Q969V4 418 aa19.7■□□□□ 0.74
CLK3-211ENST00000563297 ELP3Q9H9T3 547 aa19.7■□□□□ 0.74
CLK3-211ENST00000563297 TESPA1A2RU30 521 aaPredicted RBP19.69■□□□□ 0.74
CLK3-211ENST00000563297 FBXO46Q6PJ61 603 aaPredicted RBP19.69■□□□□ 0.74
CLK3-211ENST00000563297 PPP1R3FQ6ZSY5 799 aaPredicted RBP19.69■□□□□ 0.74
CLK3-211ENST00000563297 LPIN2Q92539 896 aa19.69■□□□□ 0.74
CLK3-211ENST00000563297 ZDHHC15Q96MV8 337 aa19.69■□□□□ 0.74
CLK3-211ENST00000563297 PTPN18Q99952 460 aa19.69■□□□□ 0.74
CLK3-211ENST00000563297 SUGT1Q9Y2Z0 365 aa19.69■□□□□ 0.74
CLK3-211ENST00000563297 LAMB1P07942 1786 aa19.69■□□□□ 0.74
CLK3-211ENST00000563297 TNRC18O15417 2968 aaPredicted RBP19.68■□□□□ 0.74
CLK3-211ENST00000563297 PDE4DIPQ5VU43 2346 aa19.68■□□□□ 0.74
CLK3-211ENST00000563297 UBTFL1P0CB47 393 aaPredicted RBP19.68■□□□□ 0.74
CLK3-211ENST00000563297 SLC5A1P13866 664 aa19.68■□□□□ 0.74
CLK3-211ENST00000563297 CACNB3P54284 484 aa19.68■□□□□ 0.74
CLK3-211ENST00000563297 MAP3K9P80192 1104 aa19.68■□□□□ 0.74
CLK3-211ENST00000563297 APOBEC3HQ6NTF7 200 aaKnown RBP19.68■□□□□ 0.74
CLK3-211ENST00000563297 OPTNQ96CV9 577 aa19.68■□□□□ 0.74
CLK3-211ENST00000563297 OTUD7BQ6GQQ9 843 aa19.67■□□□□ 0.74
CLK3-211ENST00000563297 MS4A4AQ96JQ5 239 aa19.67■□□□□ 0.74
CLK3-211ENST00000563297 FBXO3Q9UK99 471 aa19.67■□□□□ 0.74
CLK3-211ENST00000563297 OTOFQ9HC10 1997 aa19.66■□□□□ 0.74
CLK3-211ENST00000563297 HHIPL2Q6UWX4 724 aa19.66■□□□□ 0.74
CLK3-211ENST00000563297 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.66■□□□□ 0.74
CLK3-211ENST00000563297 WDR66Q8TBY9 1149 aa19.66■□□□□ 0.74
CLK3-211ENST00000563297 CNKSR2Q8WXI2 1034 aa19.66■□□□□ 0.74
CLK3-211ENST00000563297 API5Q9BZZ5 524 aaKnown RBP19.66■□□□□ 0.74
CLK3-211ENST00000563297 SIL1Q9H173 461 aa19.66■□□□□ 0.74
CLK3-211ENST00000563297 CCER2I3L3R5 266 aa19.65■□□□□ 0.74
CLK3-211ENST00000563297 CIAO1O76071 339 aa19.65■□□□□ 0.74
CLK3-211ENST00000563297 CRHR2Q13324 411 aa19.65■□□□□ 0.74
CLK3-211ENST00000563297 VGLL4Q14135 290 aa19.65■□□□□ 0.74
CLK3-211ENST00000563297 FKBP1CQ5VVH2 108 aa19.65■□□□□ 0.74
CLK3-211ENST00000563297 FAM83AQ86UY5 434 aa19.65■□□□□ 0.74
CLK3-211ENST00000563297 CEP126Q9P2H0 1117 aa19.65■□□□□ 0.74
CLK3-211ENST00000563297 MAST3O60307 1309 aa19.65■□□□□ 0.74
CLK3-211ENST00000563297 TMOD2Q9NZR1 351 aa19.64■□□□□ 0.73
CLK3-211ENST00000563297 LRRFIP2Q9Y608 721 aaKnown RBP19.64■□□□□ 0.73
CLK3-211ENST00000563297 RARSP54136 660 aaKnown RBP19.63■□□□□ 0.73
CLK3-211ENST00000563297 ATP2B3Q16720 1220 aa19.63■□□□□ 0.73
CLK3-211ENST00000563297 OTOP1Q7RTM1 612 aa19.63■□□□□ 0.73
CLK3-211ENST00000563297 BRI3BPQ8WY22 251 aa19.63■□□□□ 0.73
CLK3-211ENST00000563297 PA2G4Q9UQ80 394 aaKnown RBP19.63■□□□□ 0.73
CLK3-211ENST00000563297 HDAC5Q9UQL6 1122 aa19.63■□□□□ 0.73
CLK3-211ENST00000563297 TRIM17Q9Y577 477 aa19.63■□□□□ 0.73
CLK3-211ENST00000563297 CSADQ9Y600 493 aa19.63■□□□□ 0.73
CLK3-211ENST00000563297 MYH13Q9UKX3 1938 aa19.63■□□□□ 0.73
CLK3-211ENST00000563297 MEIS3Q99687 375 aa19.62■□□□□ 0.73
CLK3-211ENST00000563297 IL15P40933 162 aaPredicted RBP19.61■□□□□ 0.73
CLK3-211ENST00000563297 GTF2A2P52657 109 aa19.61■□□□□ 0.73
CLK3-211ENST00000563297 CD99L2Q8TCZ2 262 aa19.61■□□□□ 0.73
CLK3-211ENST00000563297 ARHGAP45Q92619 1136 aa19.61■□□□□ 0.73
CLK3-211ENST00000563297 OTUD5Q96G74 571 aa19.61■□□□□ 0.73
CLK3-211ENST00000563297 ERO1AQ96HE7 468 aa19.61■□□□□ 0.73
CLK3-211ENST00000563297 COPRSQ9NQ92 184 aa19.61■□□□□ 0.73
CLK3-211ENST00000563297 GNL3LQ9NVN8 582 aaKnown RBP19.61■□□□□ 0.73
CLK3-211ENST00000563297 CCL15-CCL14A0A0B4J2E2 113 aa19.6■□□□□ 0.73
CLK3-211ENST00000563297 SPDYE5A6NIY4 337 aa19.6■□□□□ 0.73
CLK3-211ENST00000563297 PRDX5P30044 214 aa19.6■□□□□ 0.73
CLK3-211ENST00000563297 PHKA1P46020 1223 aa19.6■□□□□ 0.73
CLK3-211ENST00000563297 SP3Q02447 781 aa19.6■□□□□ 0.73
CLK3-211ENST00000563297 DIXDC1Q155Q3 683 aa19.6■□□□□ 0.73
CLK3-211ENST00000563297 CCL15Q16663 113 aa19.6■□□□□ 0.73
CLK3-211ENST00000563297 INTS3Q68E01 1043 aaKnown RBP19.6■□□□□ 0.73
CLK3-211ENST00000563297 ZKSCAN4Q969J2 545 aaPredicted RBP19.6■□□□□ 0.73
CLK3-211ENST00000563297 HOOK2Q96ED9 719 aa19.6■□□□□ 0.73
CLK3-211ENST00000563297 WRNIP1Q96S55 665 aa19.6■□□□□ 0.73
CLK3-211ENST00000563297 DAGLAQ9Y4D2 1042 aa19.6■□□□□ 0.73
CLK3-211ENST00000563297 SNCAIPQ9Y6H5 919 aa19.6■□□□□ 0.73
CLK3-211ENST00000563297 CAP1Q01518 475 aa19.59■□□□□ 0.73
CLK3-211ENST00000563297 CDC42EP5Q6NZY7 148 aa19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms