RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 F8W031 263 aaPredicted RBP20.06■□□□□ 0.8
VPS4A-202ENST00000562754 RNF113AO15541 343 aaKnown RBP20.06■□□□□ 0.8
VPS4A-202ENST00000562754 CDC45O75419 566 aa20.06■□□□□ 0.8
VPS4A-202ENST00000562754 CHMLP26374 656 aa20.06■□□□□ 0.8
VPS4A-202ENST00000562754 TNIP1Q15025 636 aa20.06■□□□□ 0.8
VPS4A-202ENST00000562754 SLC9C2Q5TAH2 1124 aa20.06■□□□□ 0.8
VPS4A-202ENST00000562754 MAGEB6Q8N7X4 407 aa20.06■□□□□ 0.8
VPS4A-202ENST00000562754 NMIQ13287 307 aaPredicted RBP20.05■□□□□ 0.8
VPS4A-202ENST00000562754 DIXDC1Q155Q3 683 aa20.05■□□□□ 0.8
VPS4A-202ENST00000562754 TICAM2Q86XR7 235 aa20.05■□□□□ 0.8
VPS4A-202ENST00000562754 DZIP1Q86YF9 867 aaKnown RBP20.05■□□□□ 0.8
VPS4A-202ENST00000562754 KIAA0825Q8IV33 1275 aa20.05■□□□□ 0.8
VPS4A-202ENST00000562754 TTF2Q9UNY4 1162 aaKnown RBP20.05■□□□□ 0.8
VPS4A-202ENST00000562754 GJA3Q9Y6H8 435 aa20.05■□□□□ 0.8
VPS4A-202ENST00000562754 ZNF532Q9HCE3 1301 aa20.04■□□□□ 0.8
VPS4A-202ENST00000562754 ZC3H4Q9UPT8 1303 aaKnown RBP20.04■□□□□ 0.8
VPS4A-202ENST00000562754 A0A0D9SFI3 127 aa20.04■□□□□ 0.8
VPS4A-202ENST00000562754 ZFYP08048 801 aaPredicted RBP20.04■□□□□ 0.8
VPS4A-202ENST00000562754 UBE3CQ15386 1083 aa20.04■□□□□ 0.8
VPS4A-202ENST00000562754 ZMYM1Q5SVZ6 1142 aa20.04■□□□□ 0.8
VPS4A-202ENST00000562754 NAA16Q6N069 864 aaPredicted RBP20.04■□□□□ 0.8
VPS4A-202ENST00000562754 ZSCAN25Q6NSZ9 544 aa20.04■□□□□ 0.8
VPS4A-202ENST00000562754 ADGRA1Q86SQ6 560 aa20.04■□□□□ 0.8
VPS4A-202ENST00000562754 AGBL3Q8NEM8 1001 aa20.04■□□□□ 0.8
VPS4A-202ENST00000562754 FAM227BQ96M60 508 aa20.04■□□□□ 0.8
VPS4A-202ENST00000562754 DIAPH3Q9NSV4 1193 aa20.04■□□□□ 0.8
VPS4A-202ENST00000562754 DCAF8L1A6NGE4 600 aa20.03■□□□□ 0.8
VPS4A-202ENST00000562754 IGSF3O75054 1194 aa20.03■□□□□ 0.8
VPS4A-202ENST00000562754 CYP7A1P22680 504 aa20.03■□□□□ 0.8
VPS4A-202ENST00000562754 GMPSP49915 693 aaPredicted RBP20.03■□□□□ 0.8
VPS4A-202ENST00000562754 SCNN1DP51172 638 aa20.03■□□□□ 0.8
VPS4A-202ENST00000562754 LRRFIP1Q32MZ4 808 aaKnown RBP20.03■□□□□ 0.8
VPS4A-202ENST00000562754 APPBP2Q92624 585 aa20.03■□□□□ 0.8
VPS4A-202ENST00000562754 IL25Q9H293 177 aa20.03■□□□□ 0.8
VPS4A-202ENST00000562754 MAST3O60307 1309 aa20.02■□□□□ 0.8
VPS4A-202ENST00000562754 SHTN1A0MZ66 631 aa20.02■□□□□ 0.8
VPS4A-202ENST00000562754 HIP1O00291 1037 aa20.02■□□□□ 0.8
VPS4A-202ENST00000562754 RPS12P25398 132 aaKnown RBP20.02■□□□□ 0.8
VPS4A-202ENST00000562754 C8orf34Q49A92 452 aa20.02■□□□□ 0.8
VPS4A-202ENST00000562754 GPC2Q8N158 579 aa20.02■□□□□ 0.8
VPS4A-202ENST00000562754 OSBP2Q969R2 916 aa20.02■□□□□ 0.8
VPS4A-202ENST00000562754 SEC62Q99442 399 aaKnown RBP20.02■□□□□ 0.8
VPS4A-202ENST00000562754 MROH7-TTC4A0A0A0MT08 1334 aa20.02■□□□□ 0.79
VPS4A-202ENST00000562754 GAKO14976 1311 aa20.02■□□□□ 0.79
VPS4A-202ENST00000562754 M0R2C6 588 aa20.01■□□□□ 0.79
VPS4A-202ENST00000562754 CWC27Q6UX04 472 aaKnown RBP20.01■□□□□ 0.79
VPS4A-202ENST00000562754 DAGLAQ9Y4D2 1042 aa20.01■□□□□ 0.79
VPS4A-202ENST00000562754 DDNO94850 711 aaPredicted RBP20■□□□□ 0.79
VPS4A-202ENST00000562754 GSTO1P78417 241 aa20■□□□□ 0.79
VPS4A-202ENST00000562754 TMED8Q6PL24 325 aaPredicted RBP20■□□□□ 0.79
VPS4A-202ENST00000562754 PUS7LQ9H0K6 701 aaKnown RBP20■□□□□ 0.79
VPS4A-202ENST00000562754 PCDHAC2Q9Y5I4 1007 aa20■□□□□ 0.79
VPS4A-202ENST00000562754 CDK5RAP2Q96SN8 1893 aa19.99■□□□□ 0.79
VPS4A-202ENST00000562754 USP17L8P0C7I0 530 aa19.99■□□□□ 0.79
VPS4A-202ENST00000562754 CRKP46108 304 aa19.99■□□□□ 0.79
VPS4A-202ENST00000562754 HDLBPQ00341 1268 aaKnown RBP19.99■□□□□ 0.79
VPS4A-202ENST00000562754 CCDC129Q6ZRS4 1044 aa19.99■□□□□ 0.79
VPS4A-202ENST00000562754 ZNF589Q86UQ0 364 aaPredicted RBP19.99■□□□□ 0.79
VPS4A-202ENST00000562754 MIGA1Q8NAN2 632 aa19.99■□□□□ 0.79
VPS4A-202ENST00000562754 DPF2Q92785 391 aa19.99■□□□□ 0.79
VPS4A-202ENST00000562754 FAM163AQ96GL9 167 aaPredicted RBP19.99■□□□□ 0.79
VPS4A-202ENST00000562754 ESYT1Q9BSJ8 1104 aa19.99■□□□□ 0.79
VPS4A-202ENST00000562754 HELLSQ9NRZ9 838 aa19.99■□□□□ 0.79
VPS4A-202ENST00000562754 UTRNP46939 3433 aa19.99■□□□□ 0.79
VPS4A-202ENST00000562754 ECM29Q5VYK3 1845 aa19.98■□□□□ 0.79
VPS4A-202ENST00000562754 LDHCP07864 332 aa19.98■□□□□ 0.79
VPS4A-202ENST00000562754 ZNF280AP59817 542 aaPredicted RBP19.98■□□□□ 0.79
VPS4A-202ENST00000562754 HHIPL2Q6UWX4 724 aa19.98■□□□□ 0.79
VPS4A-202ENST00000562754 MICALL2Q8IY33 904 aa19.98■□□□□ 0.79
VPS4A-202ENST00000562754 TEKT1Q969V4 418 aa19.98■□□□□ 0.79
VPS4A-202ENST00000562754 SERPINA10Q9UK55 444 aa19.98■□□□□ 0.79
VPS4A-202ENST00000562754 RAD50Q92878 1312 aa19.98■□□□□ 0.79
VPS4A-202ENST00000562754 WDR90Q96KV7 1748 aa19.97■□□□□ 0.79
VPS4A-202ENST00000562754 SGSM2O43147 1006 aa19.97■□□□□ 0.79
VPS4A-202ENST00000562754 MBD4O95243 580 aa19.97■□□□□ 0.79
VPS4A-202ENST00000562754 BTDP43251 543 aa19.97■□□□□ 0.79
VPS4A-202ENST00000562754 DYNLL1P63167 89 aaKnown RBP19.97■□□□□ 0.79
VPS4A-202ENST00000562754 CFAP100Q494V2 611 aa19.97■□□□□ 0.79
VPS4A-202ENST00000562754 CASC1Q6TDU7 716 aa19.97■□□□□ 0.79
VPS4A-202ENST00000562754 SLF2Q8IX21 1173 aa19.97■□□□□ 0.79
VPS4A-202ENST00000562754 RIOK1Q9BRS2 568 aaKnown RBP19.97■□□□□ 0.79
VPS4A-202ENST00000562754 MRIQ9BWK5 157 aa19.97■□□□□ 0.79
VPS4A-202ENST00000562754 GPRC5DQ9NZD1 345 aa19.97■□□□□ 0.79
VPS4A-202ENST00000562754 HDAC9Q9UKV0 1011 aa19.97■□□□□ 0.79
VPS4A-202ENST00000562754 GPR75-ASB3A0A0A6YYF3 556 aa19.96■□□□□ 0.79
VPS4A-202ENST00000562754 MAGEB6P1A0A0J9YX57 407 aa19.96■□□□□ 0.79
VPS4A-202ENST00000562754 GLTPD2A6NH11 291 aa19.96■□□□□ 0.79
VPS4A-202ENST00000562754 MCMDC2Q4G0Z9 681 aa19.96■□□□□ 0.79
VPS4A-202ENST00000562754 APOBEC3HQ6NTF7 200 aaKnown RBP19.96■□□□□ 0.79
VPS4A-202ENST00000562754 LCORLQ8N3X6 602 aa19.96■□□□□ 0.79
VPS4A-202ENST00000562754 RUFY2Q8WXA3 655 aa19.96■□□□□ 0.79
VPS4A-202ENST00000562754 L3MBTL3Q96JM7 780 aaPredicted RBP19.96■□□□□ 0.79
VPS4A-202ENST00000562754 ZDHHC15Q96MV8 337 aa19.96■□□□□ 0.79
VPS4A-202ENST00000562754 ARMT1Q9H993 441 aa19.96■□□□□ 0.79
VPS4A-202ENST00000562754 AATFQ9NY61 560 aaKnown RBP eCLIP19.96■□□□□ 0.79
VPS4A-202ENST00000562754 CNOT7Q9UIV1 285 aaKnown RBP19.96■□□□□ 0.79
VPS4A-202ENST00000562754 CCDC171Q6TFL3 1326 aa19.96■□□□□ 0.79
VPS4A-202ENST00000562754 FOCADQ5VW36 1801 aa19.95■□□□□ 0.78
VPS4A-202ENST00000562754 GPAA1O43292 621 aa19.95■□□□□ 0.78
VPS4A-202ENST00000562754 OGFOD1Q8N543 542 aa19.95■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms