RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 MEGF11A6BM72 1044 aa5.86□□□□□ -1.47
VPS35-203ENST00000562420 CYP11A1P05108 521 aa5.86□□□□□ -1.47
VPS35-203ENST00000562420 FCGRTP55899 365 aa5.86□□□□□ -1.47
VPS35-203ENST00000562420 DAB2P98082 770 aa5.86□□□□□ -1.47
VPS35-203ENST00000562420 TMC4Q7Z404 712 aa5.86□□□□□ -1.47
VPS35-203ENST00000562420 SLC7A3Q8WY07 619 aa5.86□□□□□ -1.47
VPS35-203ENST00000562420 DUSP9Q99956 384 aaKnown RBP5.86□□□□□ -1.47
VPS35-203ENST00000562420 SSBP4Q9BWG4 385 aaPredicted RBP5.86□□□□□ -1.47
VPS35-203ENST00000562420 CARD10Q9BWT7 1032 aa5.86□□□□□ -1.47
VPS35-203ENST00000562420 CEP44Q9C0F1 390 aa5.86□□□□□ -1.47
VPS35-203ENST00000562420 AKTIPQ9H8T0 292 aa5.86□□□□□ -1.47
VPS35-203ENST00000562420 AK5Q9Y6K8 562 aa5.86□□□□□ -1.47
VPS35-203ENST00000562420 EIF4BP23588 611 aaKnown RBP5.85□□□□□ -1.47
VPS35-203ENST00000562420 HNRNPUQ00839 825 aaKnown RBP eCLIP5.85□□□□□ -1.47
VPS35-203ENST00000562420 PPP2R3AQ06190 1150 aa5.85□□□□□ -1.47
VPS35-203ENST00000562420 DUOXA2Q1HG44 320 aa5.85□□□□□ -1.47
VPS35-203ENST00000562420 RSPO4Q2I0M5 234 aaPredicted RBP5.85□□□□□ -1.47
VPS35-203ENST00000562420 UVSSAQ2YD98 709 aa5.85□□□□□ -1.47
VPS35-203ENST00000562420 DZIP1LQ8IYY4 767 aaKnown RBP5.85□□□□□ -1.47
VPS35-203ENST00000562420 WFDC12Q8WWY7 111 aa5.85□□□□□ -1.47
VPS35-203ENST00000562420 KRTAP4-12Q9BQ66 201 aa5.85□□□□□ -1.47
VPS35-203ENST00000562420 CEP41Q9BYV8 373 aa5.85□□□□□ -1.47
VPS35-203ENST00000562420 RNF208Q9H0X6 261 aa5.85□□□□□ -1.47
VPS35-203ENST00000562420 BCL11AQ9H165 835 aa5.85□□□□□ -1.47
VPS35-203ENST00000562420 SUGCTQ9HAC7 445 aa5.85□□□□□ -1.47
VPS35-203ENST00000562420 KCNK4Q9NYG8 393 aa5.85□□□□□ -1.47
VPS35-203ENST00000562420 TTBK1Q5TCY1 1321 aaPredicted RBP5.84□□□□□ -1.47
VPS35-203ENST00000562420 LOC100289279A0A1B0GTE1 492 aa5.84□□□□□ -1.47
VPS35-203ENST00000562420 WISP1O95388 367 aa5.84□□□□□ -1.47
VPS35-203ENST00000562420 NOS3P29474 1203 aa5.84□□□□□ -1.47
VPS35-203ENST00000562420 CDC25BP30305 580 aa5.84□□□□□ -1.47
VPS35-203ENST00000562420 FAAP100Q0VG06 881 aa5.84□□□□□ -1.47
VPS35-203ENST00000562420 ZNF326Q5BKZ1 582 aaKnown RBP5.84□□□□□ -1.47
VPS35-203ENST00000562420 ANKRD34AQ69YU3 496 aa5.84□□□□□ -1.47
VPS35-203ENST00000562420 SCARA3Q6AZY7 606 aa5.84□□□□□ -1.47
VPS35-203ENST00000562420 KIAA1211Q6ZU35 1233 aa5.84□□□□□ -1.47
VPS35-203ENST00000562420 ACAD11Q709F0 780 aa5.84□□□□□ -1.47
VPS35-203ENST00000562420 TRIM56Q9BRZ2 755 aaKnown RBP5.84□□□□□ -1.47
VPS35-203ENST00000562420 TPSG1Q9NRR2 321 aa5.84□□□□□ -1.47
VPS35-203ENST00000562420 TMEM39AQ9NV64 488 aa5.84□□□□□ -1.47
VPS35-203ENST00000562420 PARP2Q9UGN5 583 aa5.84□□□□□ -1.47
VPS35-203ENST00000562420 USP17L7P0C7H9 530 aa5.83□□□□□ -1.48
VPS35-203ENST00000562420 NLRP12P59046 1061 aa5.83□□□□□ -1.48
VPS35-203ENST00000562420 XPCQ01831 940 aaPredicted RBP5.83□□□□□ -1.48
VPS35-203ENST00000562420 GSTM4Q03013 218 aa5.83□□□□□ -1.48
VPS35-203ENST00000562420 NKAPLQ5M9Q1 402 aa5.83□□□□□ -1.48
VPS35-203ENST00000562420 HGSNATQ68CP4 663 aa5.83□□□□□ -1.48
VPS35-203ENST00000562420 UBASH3BQ8TF42 649 aa5.83□□□□□ -1.48
VPS35-203ENST00000562420 BCL2L13Q9BXK5 485 aa5.83□□□□□ -1.48
VPS35-203ENST00000562420 TMPRSS13Q9BYE2 586 aa5.83□□□□□ -1.48
VPS35-203ENST00000562420 KRT82Q9NSB4 513 aa5.83□□□□□ -1.48
VPS35-203ENST00000562420 ST13P50502 369 aaKnown RBP5.82□□□□□ -1.48
VPS35-203ENST00000562420 PSMD2Q13200 908 aa5.82□□□□□ -1.48
VPS35-203ENST00000562420 POU4F3Q15319 338 aa5.82□□□□□ -1.48
VPS35-203ENST00000562420 SV2BQ7L1I2 683 aa5.82□□□□□ -1.48
VPS35-203ENST00000562420 SMG8Q8ND04 991 aaKnown RBP5.82□□□□□ -1.48
VPS35-203ENST00000562420 CRELD1Q96HD1 420 aa5.82□□□□□ -1.48
VPS35-203ENST00000562420 NECAB3Q96P71 396 aaPredicted RBP5.82□□□□□ -1.48
VPS35-203ENST00000562420 RUSC1Q9BVN2 902 aa5.82□□□□□ -1.48
VPS35-203ENST00000562420 KRTAP4-8A0A0G2JLE6 195 aa5.81□□□□□ -1.48
VPS35-203ENST00000562420 RBM47A0AV96 593 aaKnown RBP5.81□□□□□ -1.48
VPS35-203ENST00000562420 DDX3YO15523 660 aaKnown RBP5.81□□□□□ -1.48
VPS35-203ENST00000562420 SORBS3O60504 671 aa5.81□□□□□ -1.48
VPS35-203ENST00000562420 H2AFB1P0C5Y9 115 aa5.81□□□□□ -1.48
VPS35-203ENST00000562420 H2AFB2P0C5Z0 115 aa5.81□□□□□ -1.48
VPS35-203ENST00000562420 NME2P22392 152 aa5.81□□□□□ -1.48
VPS35-203ENST00000562420 IREB2P48200 963 aaKnown RBP5.81□□□□□ -1.48
VPS35-203ENST00000562420 EXOSC6Q5RKV6 272 aaKnown RBP5.81□□□□□ -1.48
VPS35-203ENST00000562420 FAM46AQ96IP4 442 aaKnown RBP5.81□□□□□ -1.48
VPS35-203ENST00000562420 MEGF10Q96KG7 1140 aa5.81□□□□□ -1.48
VPS35-203ENST00000562420 CORO1BQ9BR76 489 aa5.81□□□□□ -1.48
VPS35-203ENST00000562420 EMILIN2Q9BXX0 1053 aa5.81□□□□□ -1.48
VPS35-203ENST00000562420 CYP4F12Q9HCS2 524 aa5.81□□□□□ -1.48
VPS35-203ENST00000562420 GPN3Q9UHW5 284 aaPredicted RBP5.81□□□□□ -1.48
VPS35-203ENST00000562420 AKAP2Q9Y2D5 859 aa5.81□□□□□ -1.48
VPS35-203ENST00000562420 HIF3AQ9Y2N7 669 aa5.81□□□□□ -1.48
VPS35-203ENST00000562420 SAMM50Q9Y512 469 aa5.81□□□□□ -1.48
VPS35-203ENST00000562420 ENC1O14682 589 aa5.8□□□□□ -1.48
VPS35-203ENST00000562420 DYRK3O43781 588 aa5.8□□□□□ -1.48
VPS35-203ENST00000562420 TIAF1O95411 115 aa5.8□□□□□ -1.48
VPS35-203ENST00000562420 MAOBP27338 520 aa5.8□□□□□ -1.48
VPS35-203ENST00000562420 PDZD3Q86UT5 571 aa5.8□□□□□ -1.48
VPS35-203ENST00000562420 GIPC2Q8TF65 315 aa5.8□□□□□ -1.48
VPS35-203ENST00000562420 USP26Q9BXU7 913 aa5.8□□□□□ -1.48
VPS35-203ENST00000562420 KRTAP9-9Q9BYP9 154 aa5.8□□□□□ -1.48
VPS35-203ENST00000562420 KRTAP9-4Q9BYQ2 154 aa5.8□□□□□ -1.48
VPS35-203ENST00000562420 CACNA2D2Q9NY47 1150 aa5.8□□□□□ -1.48
VPS35-203ENST00000562420 GSTP1P09211 210 aaKnown RBP5.79□□□□□ -1.48
VPS35-203ENST00000562420 ZNF16P17020 682 aaPredicted RBP5.79□□□□□ -1.48
VPS35-203ENST00000562420 MRPL58Q14197 206 aaKnown RBP5.79□□□□□ -1.48
VPS35-203ENST00000562420 PRSS36Q5K4E3 855 aa5.79□□□□□ -1.48
VPS35-203ENST00000562420 PPP1R3FQ6ZSY5 799 aaPredicted RBP5.79□□□□□ -1.48
VPS35-203ENST00000562420 AGGF1Q8N302 714 aaeCLIP5.79□□□□□ -1.48
VPS35-203ENST00000562420 NOC4LQ9BVI4 516 aaKnown RBP5.79□□□□□ -1.48
VPS35-203ENST00000562420 MRS2Q9HD23 443 aa5.79□□□□□ -1.48
VPS35-203ENST00000562420 ZFP64Q9NPA5 681 aa5.79□□□□□ -1.48
VPS35-203ENST00000562420 CCDC9Q9Y3X0 531 aaKnown RBP5.79□□□□□ -1.48
VPS35-203ENST00000562420 USP31Q70CQ4 1352 aa5.79□□□□□ -1.48
VPS35-203ENST00000562420 DLGAP3O95886 979 aa5.78□□□□□ -1.48
VPS35-203ENST00000562420 RLBP1P12271 317 aa5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms