RNA–Protein interactions for RNA: ENST00000562298.1

VPS9D1-AS1-201, VPS9D1 antisense RNA 1, humanhuman

TSL 1 (best)

Gene VPS9D1-AS1, Length 931 nt, Biotype antisense RNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-AS1-201ENST00000562298 USP44Q9H0E7 712 aa21.01■□□□□ 0.95
VPS9D1-AS1-201ENST00000562298 FKTNO75072 461 aa21■□□□□ 0.95
VPS9D1-AS1-201ENST00000562298 PDE8BO95263 885 aa21■□□□□ 0.95
VPS9D1-AS1-201ENST00000562298 ALDH1A1P00352 501 aa21■□□□□ 0.95
VPS9D1-AS1-201ENST00000562298 IREB2P48200 963 aaKnown RBP21■□□□□ 0.95
VPS9D1-AS1-201ENST00000562298 INHBEP58166 350 aa21■□□□□ 0.95
VPS9D1-AS1-201ENST00000562298 TNFAIP1Q13829 316 aa21■□□□□ 0.95
VPS9D1-AS1-201ENST00000562298 TEPSINQ96N21 525 aa21■□□□□ 0.95
VPS9D1-AS1-201ENST00000562298 SLFN5Q08AF3 891 aa20.99■□□□□ 0.95
VPS9D1-AS1-201ENST00000562298 CHAF1AQ13111 956 aaPredicted RBP20.99■□□□□ 0.95
VPS9D1-AS1-201ENST00000562298 VPS37DQ86XT2 251 aa20.99■□□□□ 0.95
VPS9D1-AS1-201ENST00000562298 ANKRD13AQ8IZ07 590 aa20.99■□□□□ 0.95
VPS9D1-AS1-201ENST00000562298 TCP10L2B9ZVM9 353 aa20.98■□□□□ 0.95
VPS9D1-AS1-201ENST00000562298 CAVIN4Q5BKX8 364 aa20.98■□□□□ 0.95
VPS9D1-AS1-201ENST00000562298 FBXO46Q6PJ61 603 aaPredicted RBP20.98■□□□□ 0.95
VPS9D1-AS1-201ENST00000562298 BCAMP50895 628 aa20.97■□□□□ 0.95
VPS9D1-AS1-201ENST00000562298 CDCA7LQ96GN5 454 aa20.97■□□□□ 0.95
VPS9D1-AS1-201ENST00000562298 TMEM39BQ9GZU3 492 aa20.97■□□□□ 0.95
VPS9D1-AS1-201ENST00000562298 MKI67P46013 3256 aaKnown RBP20.96■□□□□ 0.95
VPS9D1-AS1-201ENST00000562298 BRCA2P51587 3418 aa20.96■□□□□ 0.95
VPS9D1-AS1-201ENST00000562298 RFX5P48382 616 aaPredicted RBP20.96■□□□□ 0.95
VPS9D1-AS1-201ENST00000562298 TBC1D22AQ8WUA7 517 aa20.96■□□□□ 0.95
VPS9D1-AS1-201ENST00000562298 PTPN18Q99952 460 aa20.96■□□□□ 0.95
VPS9D1-AS1-201ENST00000562298 ELP3Q9H9T3 547 aa20.96■□□□□ 0.95
VPS9D1-AS1-201ENST00000562298 FRAT2O75474 233 aaPredicted RBP20.95■□□□□ 0.94
VPS9D1-AS1-201ENST00000562298 FGFR2P21802 821 aa20.95■□□□□ 0.94
VPS9D1-AS1-201ENST00000562298 HDLBPQ00341 1268 aaKnown RBP20.95■□□□□ 0.94
VPS9D1-AS1-201ENST00000562298 ALDH1L2Q3SY69 923 aa20.95■□□□□ 0.94
VPS9D1-AS1-201ENST00000562298 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.95■□□□□ 0.94
VPS9D1-AS1-201ENST00000562298 OPTNQ96CV9 577 aa20.95■□□□□ 0.94
VPS9D1-AS1-201ENST00000562298 TESPA1A2RU30 521 aaPredicted RBP20.94■□□□□ 0.94
VPS9D1-AS1-201ENST00000562298 SLC34A2O95436 690 aa20.94■□□□□ 0.94
VPS9D1-AS1-201ENST00000562298 CACNB3P54284 484 aa20.94■□□□□ 0.94
VPS9D1-AS1-201ENST00000562298 PUM3Q15397 648 aaKnown RBP20.94■□□□□ 0.94
VPS9D1-AS1-201ENST00000562298 TEKT1Q969V4 418 aa20.94■□□□□ 0.94
VPS9D1-AS1-201ENST00000562298 KIF16BQ96L93 1317 aa20.94■□□□□ 0.94
VPS9D1-AS1-201ENST00000562298 TNNI2P48788 182 aa20.93■□□□□ 0.94
VPS9D1-AS1-201ENST00000562298 CRHR2Q13324 411 aa20.93■□□□□ 0.94
VPS9D1-AS1-201ENST00000562298 CNKSR2Q8WXI2 1034 aa20.93■□□□□ 0.94
VPS9D1-AS1-201ENST00000562298 SMC4Q9NTJ3 1288 aa20.93■□□□□ 0.94
VPS9D1-AS1-201ENST00000562298 EYA2O00167 538 aa20.92■□□□□ 0.94
VPS9D1-AS1-201ENST00000562298 IFIT1P09914 478 aaKnown RBP20.92■□□□□ 0.94
VPS9D1-AS1-201ENST00000562298 VGLL4Q14135 290 aa20.92■□□□□ 0.94
VPS9D1-AS1-201ENST00000562298 TRMT2AQ8IZ69 625 aaKnown RBP20.92■□□□□ 0.94
VPS9D1-AS1-201ENST00000562298 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.92■□□□□ 0.94
VPS9D1-AS1-201ENST00000562298 MS4A4AQ96JQ5 239 aa20.92■□□□□ 0.94
VPS9D1-AS1-201ENST00000562298 ZDHHC15Q96MV8 337 aa20.92■□□□□ 0.94
VPS9D1-AS1-201ENST00000562298 TRIM17Q9Y577 477 aa20.92■□□□□ 0.94
VPS9D1-AS1-201ENST00000562298 MYH13Q9UKX3 1938 aa20.92■□□□□ 0.94
VPS9D1-AS1-201ENST00000562298 OTUD7BQ6GQQ9 843 aa20.91■□□□□ 0.94
VPS9D1-AS1-201ENST00000562298 APOBEC3HQ6NTF7 200 aaKnown RBP20.91■□□□□ 0.94
VPS9D1-AS1-201ENST00000562298 OTOP1Q7RTM1 612 aa20.91■□□□□ 0.94
VPS9D1-AS1-201ENST00000562298 ATG9AQ7Z3C6 839 aa20.91■□□□□ 0.94
VPS9D1-AS1-201ENST00000562298 MAP3K9P80192 1104 aa20.9■□□□□ 0.94
VPS9D1-AS1-201ENST00000562298 MRIQ9BWK5 157 aa20.9■□□□□ 0.94
VPS9D1-AS1-201ENST00000562298 SUGT1Q9Y2Z0 365 aa20.9■□□□□ 0.94
VPS9D1-AS1-201ENST00000562298 MAST3O60307 1309 aa20.89■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 CAP1Q01518 475 aa20.89■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 CD99L2Q8TCZ2 262 aa20.89■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 BRI3BPQ8WY22 251 aa20.89■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 LPIN2Q92539 896 aa20.89■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 SLC5A1P13866 664 aa20.88■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 FAM83AQ86UY5 434 aa20.88■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 ERO1AQ96HE7 468 aa20.88■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 CSADQ9Y600 493 aa20.88■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 HHIPL2Q6UWX4 724 aa20.87■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 OTUD5Q96G74 571 aa20.87■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 SIL1Q9H173 461 aa20.87■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 NOB1Q9ULX3 412 aaKnown RBP20.87■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 SNCAIPQ9Y6H5 919 aa20.87■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 CCL15-CCL14A0A0B4J2E2 113 aa20.86■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 SPDYE5A6NIY4 337 aa20.86■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 UBTFL1P0CB47 393 aaPredicted RBP20.86■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 GTF2A2P52657 109 aa20.86■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 SP3Q02447 781 aa20.86■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 CCL15Q16663 113 aa20.86■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 FKBP1CQ5VVH2 108 aa20.86■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 WDR66Q8TBY9 1149 aa20.86■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 TMOD2Q9NZR1 351 aa20.86■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 PTPN22Q9Y2R2 807 aa20.86■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 RPAP1Q9BWH6 1393 aaPredicted RBP20.85■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 CIAO1O76071 339 aa20.85■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 FAM43AQ8N2R8 423 aa20.85■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 ZKSCAN4Q969J2 545 aaPredicted RBP20.85■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 WRNIP1Q96S55 665 aa20.85■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 PDE4DIPQ5VU43 2346 aa20.84■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 CT47B1P0C2W7 299 aaPredicted RBP20.84■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 ATP2B3Q16720 1220 aa20.84■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 FBXO3Q9UK99 471 aa20.84■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 LRRFIP2Q9Y608 721 aaKnown RBP20.84■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 PRDX5P30044 214 aa20.83■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 TAF1CQ15572 869 aaPredicted RBP20.83■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 DIXDC1Q155Q3 683 aa20.83■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 EFCC1Q9HA90 598 aa20.83■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 DAGLAQ9Y4D2 1042 aa20.83■□□□□ 0.93
VPS9D1-AS1-201ENST00000562298 RBBP6Q7Z6E9 1792 aaKnown RBP20.82■□□□□ 0.92
VPS9D1-AS1-201ENST00000562298 PRPF38BQ5VTL8 546 aaKnown RBP20.82■□□□□ 0.92
VPS9D1-AS1-201ENST00000562298 ERO1BQ86YB8 467 aa20.82■□□□□ 0.92
VPS9D1-AS1-201ENST00000562298 HOOK2Q96ED9 719 aa20.82■□□□□ 0.92
VPS9D1-AS1-201ENST00000562298 API5Q9BZZ5 524 aaKnown RBP20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms