RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 BAG3O95817 575 aa8.85□□□□□ -0.99
VPS39-204ENST00000561818 APPP05067 770 aa8.85□□□□□ -0.99
VPS39-204ENST00000561818 NFIXQ14938 502 aa8.85□□□□□ -0.99
VPS39-204ENST00000561818 TXNRD1Q16881 649 aa8.85□□□□□ -0.99
VPS39-204ENST00000561818 FBXO33Q7Z6M2 555 aa8.85□□□□□ -0.99
VPS39-204ENST00000561818 EDC3Q96F86 508 aaKnown RBP8.85□□□□□ -0.99
VPS39-204ENST00000561818 BRIP1Q9BX63 1249 aa8.85□□□□□ -0.99
VPS39-204ENST00000561818 SCAND2PQ9GZW5 306 aaPredicted RBP8.85□□□□□ -0.99
VPS39-204ENST00000561818 SEC31BQ9NQW1 1179 aa8.85□□□□□ -0.99
VPS39-204ENST00000561818 ATP8A2Q9NTI2 1148 aa8.85□□□□□ -0.99
VPS39-204ENST00000561818 PODXL2Q9NZ53 605 aa8.85□□□□□ -0.99
VPS39-204ENST00000561818 CFAP45Q9UL16 551 aa8.85□□□□□ -0.99
VPS39-204ENST00000561818 TCRBV5S4A2TA0A5A2 114 aa8.84□□□□□ -0.99
VPS39-204ENST00000561818 FAM177BA6PVY3 158 aa8.84□□□□□ -0.99
VPS39-204ENST00000561818 PFKFB2O60825 505 aa8.84□□□□□ -0.99
VPS39-204ENST00000561818 FGAP02671 866 aa8.84□□□□□ -0.99
VPS39-204ENST00000561818 SERPINB2P05120 415 aa8.84□□□□□ -0.99
VPS39-204ENST00000561818 GYS1P13807 737 aa8.84□□□□□ -0.99
VPS39-204ENST00000561818 LIFRP42702 1097 aa8.84□□□□□ -0.99
VPS39-204ENST00000561818 TDO2P48775 406 aa8.84□□□□□ -0.99
VPS39-204ENST00000561818 KRT85P78386 507 aa8.84□□□□□ -0.99
VPS39-204ENST00000561818 ADCK5Q3MIX3 580 aa8.84□□□□□ -0.99
VPS39-204ENST00000561818 PPP4R3BQ5MIZ7 849 aa8.84□□□□□ -0.99
VPS39-204ENST00000561818 CC2D2BQ6DHV5 1058 aa8.84□□□□□ -0.99
VPS39-204ENST00000561818 NAA16Q6N069 864 aaPredicted RBP8.84□□□□□ -0.99
VPS39-204ENST00000561818 BICDL1Q6ZP65 573 aa8.84□□□□□ -0.99
VPS39-204ENST00000561818 TIAM2Q8IVF5 1701 aa8.84□□□□□ -0.99
VPS39-204ENST00000561818 FAM177A1Q8N128 213 aaPredicted RBP8.84□□□□□ -0.99
VPS39-204ENST00000561818 SYNE4Q8N205 404 aa8.84□□□□□ -0.99
VPS39-204ENST00000561818 STAG1Q8WVM7 1258 aa8.84□□□□□ -0.99
VPS39-204ENST00000561818 STRBPQ96SI9 672 aaKnown RBP8.84□□□□□ -0.99
VPS39-204ENST00000561818 CRNKL1Q9BZJ0 848 aaKnown RBP8.84□□□□□ -0.99
VPS39-204ENST00000561818 ANKIB1Q9P2G1 1089 aa8.84□□□□□ -0.99
VPS39-204ENST00000561818 ARPP21Q9UBL0 812 aaPredicted RBP8.84□□□□□ -0.99
VPS39-204ENST00000561818 ANAPC4Q9UJX5 808 aa8.84□□□□□ -0.99
VPS39-204ENST00000561818 ANGEL1Q9UNK9 670 aaKnown RBP8.84□□□□□ -0.99
VPS39-204ENST00000561818 DDX49Q9Y6V7 483 aaKnown RBP8.84□□□□□ -0.99
VPS39-204ENST00000561818 A0A1B0GUL6 1792 aa8.84□□□□□ -1
VPS39-204ENST00000561818 ELP1O95163 1332 aa8.83□□□□□ -1
VPS39-204ENST00000561818 MAGEB6P1A0A0J9YX57 407 aa8.83□□□□□ -1
VPS39-204ENST00000561818 GOLGA6L3A6NEY3 463 aa8.83□□□□□ -1
VPS39-204ENST00000561818 H3BQV1 296 aa8.83□□□□□ -1
VPS39-204ENST00000561818 M0R2C6 588 aa8.83□□□□□ -1
VPS39-204ENST00000561818 CPLX1O14810 134 aa8.83□□□□□ -1
VPS39-204ENST00000561818 F13A1P00488 732 aa8.83□□□□□ -1
VPS39-204ENST00000561818 CALM1P0DP23 149 aa8.83□□□□□ -1
VPS39-204ENST00000561818 CALM2P0DP24 149 aa8.83□□□□□ -1
VPS39-204ENST00000561818 CALM3P0DP25 149 aa8.83□□□□□ -1
VPS39-204ENST00000561818 NPR1P16066 1061 aa8.83□□□□□ -1
VPS39-204ENST00000561818 GJB2P29033 226 aa8.83□□□□□ -1
VPS39-204ENST00000561818 TM4SF1P30408 202 aa8.83□□□□□ -1
VPS39-204ENST00000561818 EXOSC10Q01780 885 aaKnown RBP8.83□□□□□ -1
VPS39-204ENST00000561818 IFFO2Q5TF58 517 aa8.83□□□□□ -1
VPS39-204ENST00000561818 LARP1BQ659C4 914 aaKnown RBP8.83□□□□□ -1
VPS39-204ENST00000561818 PRR5LQ6MZQ0 368 aa8.83□□□□□ -1
VPS39-204ENST00000561818 Q6ZUG5 572 aa8.83□□□□□ -1
VPS39-204ENST00000561818 CCDC83Q8IWF9 413 aa8.83□□□□□ -1
VPS39-204ENST00000561818 MAGEB6Q8N7X4 407 aa8.83□□□□□ -1
VPS39-204ENST00000561818 ESR2Q92731 530 aa8.83□□□□□ -1
VPS39-204ENST00000561818 EYA3Q99504 573 aa8.83□□□□□ -1
VPS39-204ENST00000561818 TFCP2L1Q9NZI6 479 aa8.83□□□□□ -1
VPS39-204ENST00000561818 RAI14Q9P0K7 980 aa8.83□□□□□ -1
VPS39-204ENST00000561818 RBM27Q9P2N5 1060 aaKnown RBP8.83□□□□□ -1
VPS39-204ENST00000561818 GGA1Q9UJY5 639 aa8.83□□□□□ -1
VPS39-204ENST00000561818 PARP3Q9Y6F1 533 aa8.83□□□□□ -1
VPS39-204ENST00000561818 NID2Q14112 1375 aa8.83□□□□□ -1
VPS39-204ENST00000561818 KIAA1551Q9HCM1 1747 aa8.83□□□□□ -1
VPS39-204ENST00000561818 TRIM37O94972 964 aa8.82□□□□□ -1
VPS39-204ENST00000561818 XBP1P17861 261 aa8.82□□□□□ -1
VPS39-204ENST00000561818 SYT1P21579 422 aa8.82□□□□□ -1
VPS39-204ENST00000561818 CYP7A1P22680 504 aa8.82□□□□□ -1
VPS39-204ENST00000561818 MRE11P49959 708 aa8.82□□□□□ -1
VPS39-204ENST00000561818 UBE2HP62256 183 aa8.82□□□□□ -1
VPS39-204ENST00000561818 SF3B2Q13435 895 aaKnown RBP8.82□□□□□ -1
VPS39-204ENST00000561818 TOB2Q14106 344 aaPredicted RBP8.82□□□□□ -1
VPS39-204ENST00000561818 SCARF1Q14162 830 aa8.82□□□□□ -1
VPS39-204ENST00000561818 ME3Q16798 604 aa8.82□□□□□ -1
VPS39-204ENST00000561818 AKNAD1Q5T1N1 836 aa8.82□□□□□ -1
VPS39-204ENST00000561818 MCTP1Q6DN14 999 aa8.82□□□□□ -1
VPS39-204ENST00000561818 MFSD6Q6ZSS7 791 aa8.82□□□□□ -1
VPS39-204ENST00000561818 SGMS1Q86VZ5 419 aa8.82□□□□□ -1
VPS39-204ENST00000561818 IQCA1Q86XH1 822 aa8.82□□□□□ -1
VPS39-204ENST00000561818 DZIP1Q86YF9 867 aaKnown RBP8.82□□□□□ -1
VPS39-204ENST00000561818 BRF1Q92994 677 aa8.82□□□□□ -1
VPS39-204ENST00000561818 PUS7LQ9H0K6 701 aaKnown RBP8.82□□□□□ -1
VPS39-204ENST00000561818 PIH1D3Q9NQM4 214 aaKnown RBP8.82□□□□□ -1
VPS39-204ENST00000561818 SRP68Q9UHB9 627 aaKnown RBP8.82□□□□□ -1
VPS39-204ENST00000561818 TPCN1Q9ULQ1 816 aa8.82□□□□□ -1
VPS39-204ENST00000561818 QSER1Q2KHR3 1735 aa8.82□□□□□ -1
VPS39-204ENST00000561818 NRXN2Q9P2S2 1712 aa8.81□□□□□ -1
VPS39-204ENST00000561818 PRC1O43663 620 aa8.81□□□□□ -1
VPS39-204ENST00000561818 MBD4O95243 580 aa8.81□□□□□ -1
VPS39-204ENST00000561818 APBA3O96018 575 aa8.81□□□□□ -1
VPS39-204ENST00000561818 LDHBP07195 334 aaKnown RBP8.81□□□□□ -1
VPS39-204ENST00000561818 DEKP35659 375 aaKnown RBP8.81□□□□□ -1
VPS39-204ENST00000561818 BCAMP50895 628 aa8.81□□□□□ -1
VPS39-204ENST00000561818 PDE4BQ07343 736 aa8.81□□□□□ -1
VPS39-204ENST00000561818 MKRN4PQ13434 485 aaPredicted RBP8.81□□□□□ -1
VPS39-204ENST00000561818 CCDC129Q6ZRS4 1044 aa8.81□□□□□ -1
VPS39-204ENST00000561818 BRAPQ7Z569 592 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms