RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 LPIN2Q92539 896 aa12.84□□□□□ -0.35
CLK3-205ENST00000561673 ZNF70Q9UC06 446 aaPredicted RBP12.84□□□□□ -0.35
CLK3-205ENST00000561673 FBXO3Q9UK99 471 aa12.84□□□□□ -0.35
CLK3-205ENST00000561673 ANGEL1Q9UNK9 670 aaKnown RBP12.84□□□□□ -0.35
CLK3-205ENST00000561673 PA2G4Q9UQ80 394 aaKnown RBP12.84□□□□□ -0.35
CLK3-205ENST00000561673 PPP2R3BQ9Y5P8 575 aa12.84□□□□□ -0.35
CLK3-205ENST00000561673 SLC5A1P13866 664 aa12.83□□□□□ -0.36
CLK3-205ENST00000561673 TRIM27P14373 513 aa12.83□□□□□ -0.36
CLK3-205ENST00000561673 CRKP46108 304 aa12.83□□□□□ -0.36
CLK3-205ENST00000561673 RASA3Q14644 834 aa12.83□□□□□ -0.36
CLK3-205ENST00000561673 SUPT20HL1Q3ZLR7 823 aa12.83□□□□□ -0.36
CLK3-205ENST00000561673 SPDYE2Q495Y8 402 aa12.83□□□□□ -0.36
CLK3-205ENST00000561673 NBPF12Q5TAG4 269 aaPredicted RBP12.83□□□□□ -0.36
CLK3-205ENST00000561673 FRAT1Q92837 279 aaPredicted RBP12.83□□□□□ -0.36
CLK3-205ENST00000561673 TDRD3Q9H7E2 651 aaKnown RBP12.83□□□□□ -0.36
CLK3-205ENST00000561673 CEP126Q9P2H0 1117 aa12.83□□□□□ -0.36
CLK3-205ENST00000561673 TNNQ9UQP3 1299 aa12.83□□□□□ -0.36
CLK3-205ENST00000561673 COL1A1P02452 1464 aaPredicted RBP12.83□□□□□ -0.36
CLK3-205ENST00000561673 GNAI3P08754 354 aa12.82□□□□□ -0.36
CLK3-205ENST00000561673 IL15P40933 162 aaPredicted RBP12.82□□□□□ -0.36
CLK3-205ENST00000561673 MKRN3Q13064 507 aaKnown RBP12.82□□□□□ -0.36
CLK3-205ENST00000561673 MAP3K11Q16584 847 aa12.82□□□□□ -0.36
CLK3-205ENST00000561673 ATF7IPQ6VMQ6 1270 aa12.82□□□□□ -0.36
CLK3-205ENST00000561673 ABHD8Q96I13 439 aa12.82□□□□□ -0.36
CLK3-205ENST00000561673 PPP1R12BO60237 982 aaPredicted RBP12.81□□□□□ -0.36
CLK3-205ENST00000561673 TM4SF4P48230 202 aa12.81□□□□□ -0.36
CLK3-205ENST00000561673 HDLBPQ00341 1268 aaKnown RBP12.81□□□□□ -0.36
CLK3-205ENST00000561673 ATP2B3Q16720 1220 aa12.81□□□□□ -0.36
CLK3-205ENST00000561673 CLUAP1Q96AJ1 413 aa12.81□□□□□ -0.36
CLK3-205ENST00000561673 SLC10A4Q96EP9 437 aa12.81□□□□□ -0.36
CLK3-205ENST00000561673 MRIQ9BWK5 157 aa12.81□□□□□ -0.36
CLK3-205ENST00000561673 COPRSQ9NQ92 184 aa12.81□□□□□ -0.36
CLK3-205ENST00000561673 SSC5DA1L4H1 1573 aa12.81□□□□□ -0.36
CLK3-205ENST00000561673 TCP10L2B9ZVM9 353 aa12.8□□□□□ -0.36
CLK3-205ENST00000561673 SRGAP3O43295 1099 aa12.8□□□□□ -0.36
CLK3-205ENST00000561673 USP2O75604 605 aaPredicted RBP12.8□□□□□ -0.36
CLK3-205ENST00000561673 TNFAIP1Q13829 316 aa12.8□□□□□ -0.36
CLK3-205ENST00000561673 SPRYD7Q5W111 196 aa12.8□□□□□ -0.36
CLK3-205ENST00000561673 TEKT1Q969V4 418 aa12.8□□□□□ -0.36
CLK3-205ENST00000561673 CLMNQ96JQ2 1002 aa12.8□□□□□ -0.36
CLK3-205ENST00000561673 ZDHHC15Q96MV8 337 aa12.8□□□□□ -0.36
CLK3-205ENST00000561673 TEPSINQ96N21 525 aa12.8□□□□□ -0.36
CLK3-205ENST00000561673 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.8□□□□□ -0.36
CLK3-205ENST00000561673 SUGT1Q9Y2Z0 365 aa12.8□□□□□ -0.36
CLK3-205ENST00000561673 TIMM10P62072 90 aa12.79□□□□□ -0.36
CLK3-205ENST00000561673 MTX1Q13505 466 aa12.79□□□□□ -0.36
CLK3-205ENST00000561673 APOBEC3HQ6NTF7 200 aaKnown RBP12.79□□□□□ -0.36
CLK3-205ENST00000561673 CDAN1Q8IWY9 1227 aa12.79□□□□□ -0.36
CLK3-205ENST00000561673 WDR66Q8TBY9 1149 aa12.79□□□□□ -0.36
CLK3-205ENST00000561673 MCOLN1Q9GZU1 580 aa12.79□□□□□ -0.36
CLK3-205ENST00000561673 TMEM39BQ9GZU3 492 aa12.79□□□□□ -0.36
CLK3-205ENST00000561673 UNCXA6NJT0 531 aa12.78□□□□□ -0.36
CLK3-205ENST00000561673 TBC1D8O95759 1140 aa12.78□□□□□ -0.36
CLK3-205ENST00000561673 GNAI2P04899 355 aa12.78□□□□□ -0.36
CLK3-205ENST00000561673 ADORA1P30542 326 aa12.78□□□□□ -0.36
CLK3-205ENST00000561673 PHKA1P46020 1223 aa12.78□□□□□ -0.36
CLK3-205ENST00000561673 IREB2P48200 963 aaKnown RBP12.78□□□□□ -0.36
CLK3-205ENST00000561673 CACNB3P54284 484 aa12.78□□□□□ -0.36
CLK3-205ENST00000561673 DGKZQ13574 1117 aa12.78□□□□□ -0.36
CLK3-205ENST00000561673 ZKSCAN2Q63HK3 967 aa12.78□□□□□ -0.36
CLK3-205ENST00000561673 HHIPL2Q6UWX4 724 aa12.78□□□□□ -0.36
CLK3-205ENST00000561673 TMEM57Q8N5G2 664 aa12.78□□□□□ -0.36
CLK3-205ENST00000561673 GNL3LQ9NVN8 582 aaKnown RBP12.78□□□□□ -0.36
CLK3-205ENST00000561673 TNNI2P48788 182 aa12.77□□□□□ -0.37
CLK3-205ENST00000561673 SREBF2Q12772 1141 aa12.77□□□□□ -0.37
CLK3-205ENST00000561673 TFCP2Q12800 502 aa12.77□□□□□ -0.37
CLK3-205ENST00000561673 CCDC102BQ68D86 513 aa12.77□□□□□ -0.37
CLK3-205ENST00000561673 WNK4Q96J92 1243 aa12.77□□□□□ -0.37
CLK3-205ENST00000561673 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.77□□□□□ -0.37
CLK3-205ENST00000561673 MAST3O60307 1309 aa12.77□□□□□ -0.37
CLK3-205ENST00000561673 CASP8AP2Q9UKL3 1982 aa12.76□□□□□ -0.37
CLK3-205ENST00000561673 PNMA6EA0A0J9YXQ4 647 aa12.76□□□□□ -0.37
CLK3-205ENST00000561673 CCDC85CA6NKD9 419 aa12.76□□□□□ -0.37
CLK3-205ENST00000561673 ZBTB48P10074 688 aaPredicted RBP12.76□□□□□ -0.37
CLK3-205ENST00000561673 PRDX5P30044 214 aa12.76□□□□□ -0.37
CLK3-205ENST00000561673 GJA5P36382 358 aa12.76□□□□□ -0.37
CLK3-205ENST00000561673 ANKRD13AQ8IZ07 590 aa12.76□□□□□ -0.37
CLK3-205ENST00000561673 DENND2AQ9ULE3 1009 aa12.76□□□□□ -0.37
CLK3-205ENST00000561673 ECM29Q5VYK3 1845 aa12.76□□□□□ -0.37
CLK3-205ENST00000561673 A0A1B0GUL7 405 aa12.75□□□□□ -0.37
CLK3-205ENST00000561673 MANSC4A6NHS7 340 aaPredicted RBP12.75□□□□□ -0.37
CLK3-205ENST00000561673 SEMA3EO15041 775 aa12.75□□□□□ -0.37
CLK3-205ENST00000561673 LDHBP07195 334 aaKnown RBP12.75□□□□□ -0.37
CLK3-205ENST00000561673 INHBEP58166 350 aa12.75□□□□□ -0.37
CLK3-205ENST00000561673 DIXDC1Q155Q3 683 aa12.75□□□□□ -0.37
CLK3-205ENST00000561673 FKBP1CQ5VVH2 108 aa12.75□□□□□ -0.37
CLK3-205ENST00000561673 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.75□□□□□ -0.37
CLK3-205ENST00000561673 FAM83AQ86UY5 434 aa12.75□□□□□ -0.37
CLK3-205ENST00000561673 ARAP2Q8WZ64 1704 aa12.75□□□□□ -0.37
CLK3-205ENST00000561673 XAGE2Q96GT9 111 aa12.75□□□□□ -0.37
CLK3-205ENST00000561673 R3HDMLQ9H3Y0 253 aa12.75□□□□□ -0.37
CLK3-205ENST00000561673 TMOD2Q9NZR1 351 aa12.75□□□□□ -0.37
CLK3-205ENST00000561673 AKAP2Q9Y2D5 859 aa12.75□□□□□ -0.37
CLK3-205ENST00000561673 DAGLAQ9Y4D2 1042 aa12.75□□□□□ -0.37
CLK3-205ENST00000561673 ZBED9Q6R2W3 1325 aa12.74□□□□□ -0.37
CLK3-205ENST00000561673 SALL1Q9NSC2 1324 aa12.74□□□□□ -0.37
CLK3-205ENST00000561673 RLBP1P12271 317 aa12.74□□□□□ -0.37
CLK3-205ENST00000561673 MAP3K9P80192 1104 aa12.74□□□□□ -0.37
CLK3-205ENST00000561673 CDC42EP5Q6NZY7 148 aa12.74□□□□□ -0.37
CLK3-205ENST00000561673 IFNL1Q8IU54 200 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms