RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 HMG20BQ9P0W2 317 aa7.75□□□□□ -1.17
SPG11-221ENST00000560299 LRP2BPQ9P2M1 347 aa7.75□□□□□ -1.17
SPG11-221ENST00000560299 ZNRF3Q9ULT6 936 aa7.75□□□□□ -1.17
SPG11-221ENST00000560299 DUOX1Q9NRD9 1551 aa7.75□□□□□ -1.17
SPG11-221ENST00000560299 PDS5AQ29RF7 1337 aaKnown RBP7.75□□□□□ -1.17
SPG11-221ENST00000560299 RAD50Q92878 1312 aa7.75□□□□□ -1.17
SPG11-221ENST00000560299 WDR90Q96KV7 1748 aa7.75□□□□□ -1.17
SPG11-221ENST00000560299 A0A1B0GUL6 1792 aa7.74□□□□□ -1.17
SPG11-221ENST00000560299 IQCA1LA6NCM1 817 aa7.74□□□□□ -1.17
SPG11-221ENST00000560299 RNF113AO15541 343 aaKnown RBP7.74□□□□□ -1.17
SPG11-221ENST00000560299 MCCP23508 829 aa7.74□□□□□ -1.17
SPG11-221ENST00000560299 RPS12P25398 132 aaKnown RBP7.74□□□□□ -1.17
SPG11-221ENST00000560299 RASGRF1Q13972 1273 aa7.74□□□□□ -1.17
SPG11-221ENST00000560299 WDR66Q8TBY9 1149 aa7.74□□□□□ -1.17
SPG11-221ENST00000560299 DPF2Q92785 391 aa7.74□□□□□ -1.17
SPG11-221ENST00000560299 HELLSQ9NRZ9 838 aa7.74□□□□□ -1.17
SPG11-221ENST00000560299 RNF181Q9P0P0 153 aa7.74□□□□□ -1.17
SPG11-221ENST00000560299 POLLQ9UGP5 575 aa7.74□□□□□ -1.17
SPG11-221ENST00000560299 SCN4AP35499 1836 aa7.73□□□□□ -1.17
SPG11-221ENST00000560299 COL4A1P02462 1669 aa7.73□□□□□ -1.17
SPG11-221ENST00000560299 CACNA1SQ13698 1873 aa7.73□□□□□ -1.17
SPG11-221ENST00000560299 RIMBP2O15034 1052 aa7.73□□□□□ -1.17
SPG11-221ENST00000560299 SGSM2O43147 1006 aa7.73□□□□□ -1.17
SPG11-221ENST00000560299 IDH1O75874 414 aaKnown RBP7.73□□□□□ -1.17
SPG11-221ENST00000560299 CYP2E1P05181 493 aaPredicted RBP7.73□□□□□ -1.17
SPG11-221ENST00000560299 IL1R1P14778 569 aa7.73□□□□□ -1.17
SPG11-221ENST00000560299 VEGFAP15692 232 aaPredicted RBP7.73□□□□□ -1.17
SPG11-221ENST00000560299 FKBP1AP62942 108 aaKnown RBP7.73□□□□□ -1.17
SPG11-221ENST00000560299 SCARF1Q14162 830 aa7.73□□□□□ -1.17
SPG11-221ENST00000560299 TNIP1Q15025 636 aa7.73□□□□□ -1.17
SPG11-221ENST00000560299 UBE3CQ15386 1083 aa7.73□□□□□ -1.17
SPG11-221ENST00000560299 MCMDC2Q4G0Z9 681 aa7.73□□□□□ -1.17
SPG11-221ENST00000560299 SLC9C2Q5TAH2 1124 aa7.73□□□□□ -1.17
SPG11-221ENST00000560299 ERICH6Q7L0X2 663 aa7.73□□□□□ -1.17
SPG11-221ENST00000560299 TDRD7Q8NHU6 1098 aaKnown RBP7.73□□□□□ -1.17
SPG11-221ENST00000560299 TBC1D22AQ8WUA7 517 aa7.73□□□□□ -1.17
SPG11-221ENST00000560299 EDC3Q96F86 508 aaKnown RBP7.73□□□□□ -1.17
SPG11-221ENST00000560299 C22orf23Q9BZE7 217 aa7.73□□□□□ -1.17
SPG11-221ENST00000560299 ANTXR1Q9H6X2 564 aa7.73□□□□□ -1.17
SPG11-221ENST00000560299 CD209Q9NNX6 404 aa7.73□□□□□ -1.17
SPG11-221ENST00000560299 ANO2Q9NQ90 1003 aa7.73□□□□□ -1.17
SPG11-221ENST00000560299 ABCF2Q9UG63 623 aa7.73□□□□□ -1.17
SPG11-221ENST00000560299 NDUFB9Q9Y6M9 179 aa7.73□□□□□ -1.17
SPG11-221ENST00000560299 AKAP11Q9UKA4 1901 aa7.73□□□□□ -1.17
SPG11-221ENST00000560299 IRS2Q9Y4H2 1338 aa7.73□□□□□ -1.17
SPG11-221ENST00000560299 MYH13Q9UKX3 1938 aa7.72□□□□□ -1.17
SPG11-221ENST00000560299 WTIPA6NIX2 430 aaPredicted RBP7.72□□□□□ -1.17
SPG11-221ENST00000560299 SEC24BO95487 1268 aa7.72□□□□□ -1.17
SPG11-221ENST00000560299 ANP32AP39687 249 aaKnown RBP7.72□□□□□ -1.17
SPG11-221ENST00000560299 MNX1P50219 401 aaPredicted RBP7.72□□□□□ -1.17
SPG11-221ENST00000560299 ATN1P54259 1190 aaPredicted RBP7.72□□□□□ -1.17
SPG11-221ENST00000560299 GSTO1P78417 241 aa7.72□□□□□ -1.17
SPG11-221ENST00000560299 CHAF1AQ13111 956 aaPredicted RBP7.72□□□□□ -1.17
SPG11-221ENST00000560299 NMIQ13287 307 aaPredicted RBP7.72□□□□□ -1.17
SPG11-221ENST00000560299 PNMA8AQ86V59 439 aaPredicted RBP7.72□□□□□ -1.17
SPG11-221ENST00000560299 TXNRD3Q86VQ6 643 aa7.72□□□□□ -1.17
SPG11-221ENST00000560299 SLF2Q8IX21 1173 aa7.72□□□□□ -1.17
SPG11-221ENST00000560299 LARGE2Q8N3Y3 721 aa7.72□□□□□ -1.17
SPG11-221ENST00000560299 APPBP2Q92624 585 aa7.72□□□□□ -1.17
SPG11-221ENST00000560299 GPBP1L1Q9HC44 474 aaPredicted RBP7.72□□□□□ -1.17
SPG11-221ENST00000560299 RAI14Q9P0K7 980 aa7.72□□□□□ -1.17
SPG11-221ENST00000560299 IQSEC3Q9UPP2 1182 aaPredicted RBP7.72□□□□□ -1.17
SPG11-221ENST00000560299 RBM19Q9Y4C8 960 aaKnown RBP7.72□□□□□ -1.17
SPG11-221ENST00000560299 MYO3BQ8WXR4 1341 aa7.72□□□□□ -1.17
SPG11-221ENST00000560299 TIAM2Q8IVF5 1701 aa7.72□□□□□ -1.17
SPG11-221ENST00000560299 CCDC88AQ3V6T2 1871 aa7.71□□□□□ -1.18
SPG11-221ENST00000560299 PPIP5K2O43314 1243 aa7.71□□□□□ -1.18
SPG11-221ENST00000560299 TOMM70O94826 608 aa7.71□□□□□ -1.18
SPG11-221ENST00000560299 LDHBP07195 334 aaKnown RBP7.71□□□□□ -1.18
SPG11-221ENST00000560299 LDHCP07864 332 aa7.71□□□□□ -1.18
SPG11-221ENST00000560299 KLRK1P26718 216 aa7.71□□□□□ -1.18
SPG11-221ENST00000560299 ADD2P35612 726 aa7.71□□□□□ -1.18
SPG11-221ENST00000560299 EIF6P56537 245 aaKnown RBP7.71□□□□□ -1.18
SPG11-221ENST00000560299 RASSF7Q02833 373 aa7.71□□□□□ -1.18
SPG11-221ENST00000560299 FSTL1Q12841 308 aa7.71□□□□□ -1.18
SPG11-221ENST00000560299 ZMYM1Q5SVZ6 1142 aa7.71□□□□□ -1.18
SPG11-221ENST00000560299 RNF20Q5VTR2 975 aa7.71□□□□□ -1.18
SPG11-221ENST00000560299 PI16Q6UXB8 463 aa7.71□□□□□ -1.18
SPG11-221ENST00000560299 DZIP1Q86YF9 867 aaKnown RBP7.71□□□□□ -1.18
SPG11-221ENST00000560299 CDAN1Q8IWY9 1227 aa7.71□□□□□ -1.18
SPG11-221ENST00000560299 NIM1KQ8IY84 436 aa7.71□□□□□ -1.18
SPG11-221ENST00000560299 AGBL3Q8NEM8 1001 aa7.71□□□□□ -1.18
SPG11-221ENST00000560299 IL27Q8NEV9 243 aa7.71□□□□□ -1.18
SPG11-221ENST00000560299 RBM46Q8TBY0 533 aaKnown RBP7.71□□□□□ -1.18
SPG11-221ENST00000560299 ZC3H15Q8WU90 426 aaKnown RBP7.71□□□□□ -1.18
SPG11-221ENST00000560299 FAM227BQ96M60 508 aa7.71□□□□□ -1.18
SPG11-221ENST00000560299 TBC1D32Q96NH3 1257 aa7.71□□□□□ -1.18
SPG11-221ENST00000560299 NOL10Q9BSC4 688 aaKnown RBP7.71□□□□□ -1.18
SPG11-221ENST00000560299 USP26Q9BXU7 913 aa7.71□□□□□ -1.18
SPG11-221ENST00000560299 PIH1D3Q9NQM4 214 aaKnown RBP7.71□□□□□ -1.18
SPG11-221ENST00000560299 ZNF277Q9NRM2 450 aaPredicted RBP7.71□□□□□ -1.18
SPG11-221ENST00000560299 PGAP2Q9UHJ9 254 aa7.71□□□□□ -1.18
SPG11-221ENST00000560299 SUGT1Q9Y2Z0 365 aa7.71□□□□□ -1.18
SPG11-221ENST00000560299 MYH7P12883 1935 aa7.71□□□□□ -1.18
SPG11-221ENST00000560299 SALL1Q9NSC2 1324 aa7.71□□□□□ -1.18
SPG11-221ENST00000560299 A0A0D9SFI3 127 aa7.7□□□□□ -1.18
SPG11-221ENST00000560299 KIF3CO14782 793 aa7.7□□□□□ -1.18
SPG11-221ENST00000560299 VIL1P09327 827 aaKnown RBP7.7□□□□□ -1.18
SPG11-221ENST00000560299 PDE6AP16499 860 aa7.7□□□□□ -1.18
SPG11-221ENST00000560299 ZKSCAN1P17029 563 aaPredicted RBP7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms