RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 ABCF2Q9UG63 623 aa26.58■■□□□ 1.85
SNX1-210ENST00000560260 TTC41PQ6P2S7 1318 aa26.57■■□□□ 1.84
SNX1-210ENST00000560260 H7C1D1 291 aa26.57■■□□□ 1.84
SNX1-210ENST00000560260 ZNF384Q8TF68 577 aa26.57■■□□□ 1.84
SNX1-210ENST00000560260 GPATCH3Q96I76 525 aa26.57■■□□□ 1.84
SNX1-210ENST00000560260 HAUS7Q99871 368 aa26.57■■□□□ 1.84
SNX1-210ENST00000560260 STAP2Q9UGK3 403 aa26.57■■□□□ 1.84
SNX1-210ENST00000560260 SUGT1Q9Y2Z0 365 aa26.57■■□□□ 1.84
SNX1-210ENST00000560260 PDE1AP54750 535 aa26.56■■□□□ 1.84
SNX1-210ENST00000560260 ZGPATQ8N5A5 531 aaKnown RBP26.56■■□□□ 1.84
SNX1-210ENST00000560260 MYOZ2Q9NPC6 264 aa26.56■■□□□ 1.84
SNX1-210ENST00000560260 AOX1Q06278 1338 aa26.56■■□□□ 1.84
SNX1-210ENST00000560260 LDHBP07195 334 aaKnown RBP26.55■■□□□ 1.84
SNX1-210ENST00000560260 KIF4BQ2VIQ3 1234 aa26.55■■□□□ 1.84
SNX1-210ENST00000560260 RBM26Q5T8P6 1007 aaKnown RBP26.55■■□□□ 1.84
SNX1-210ENST00000560260 PLEKHM2Q8IWE5 1019 aa26.55■■□□□ 1.84
SNX1-210ENST00000560260 ZBED3Q96IU2 234 aaPredicted RBP26.55■■□□□ 1.84
SNX1-210ENST00000560260 HDAC9Q9UKV0 1011 aa26.55■■□□□ 1.84
SNX1-210ENST00000560260 GOLIM4O00461 696 aa26.54■■□□□ 1.84
SNX1-210ENST00000560260 DIXDC1Q155Q3 683 aa26.54■■□□□ 1.84
SNX1-210ENST00000560260 SKAP1Q86WV1 359 aa26.54■■□□□ 1.84
SNX1-210ENST00000560260 OGFOD1Q8N543 542 aa26.54■■□□□ 1.84
SNX1-210ENST00000560260 ASTN2O75129 1339 aaPredicted RBP26.54■■□□□ 1.84
SNX1-210ENST00000560260 CRKP46108 304 aa26.53■■□□□ 1.84
SNX1-210ENST00000560260 EAPPQ56P03 285 aaPredicted RBP26.53■■□□□ 1.84
SNX1-210ENST00000560260 USP50Q70EL3 339 aaPredicted RBP26.53■■□□□ 1.84
SNX1-210ENST00000560260 ERICH6Q7L0X2 663 aa26.53■■□□□ 1.84
SNX1-210ENST00000560260 MECOMQ03112 1051 aa26.52■■□□□ 1.84
SNX1-210ENST00000560260 CFAP100Q494V2 611 aa26.52■■□□□ 1.84
SNX1-210ENST00000560260 PAG1Q9NWQ8 432 aa26.52■■□□□ 1.84
SNX1-210ENST00000560260 SERPINA10Q9UK55 444 aa26.52■■□□□ 1.84
SNX1-210ENST00000560260 GLRX3O76003 335 aaKnown RBP26.51■■□□□ 1.83
SNX1-210ENST00000560260 SPTY2D1Q68D10 685 aaPredicted RBP26.51■■□□□ 1.83
SNX1-210ENST00000560260 NSUN4Q96CB9 384 aaKnown RBP26.51■■□□□ 1.83
SNX1-210ENST00000560260 MAST3O60307 1309 aa26.51■■□□□ 1.83
SNX1-210ENST00000560260 MYH2Q9UKX2 1941 aa26.51■■□□□ 1.83
SNX1-210ENST00000560260 ERC2O15083 957 aa26.5■■□□□ 1.83
SNX1-210ENST00000560260 MAP4K4O95819 1239 aaPredicted RBP26.5■■□□□ 1.83
SNX1-210ENST00000560260 MMP14P50281 582 aa26.5■■□□□ 1.83
SNX1-210ENST00000560260 HDLBPQ00341 1268 aaKnown RBP26.5■■□□□ 1.83
SNX1-210ENST00000560260 NBPF9Q3BBW0 867 aa26.5■■□□□ 1.83
SNX1-210ENST00000560260 DZIP1Q86YF9 867 aaKnown RBP26.5■■□□□ 1.83
SNX1-210ENST00000560260 MTMR14Q8NCE2 650 aa26.5■■□□□ 1.83
SNX1-210ENST00000560260 RAI14Q9P0K7 980 aa26.5■■□□□ 1.83
SNX1-210ENST00000560260 LRP2BPQ9P2M1 347 aa26.5■■□□□ 1.83
SNX1-210ENST00000560260 DAGLAQ9Y4D2 1042 aa26.5■■□□□ 1.83
SNX1-210ENST00000560260 ECM29Q5VYK3 1845 aa26.49■■□□□ 1.83
SNX1-210ENST00000560260 SPDYE2BA6NHP3 402 aa26.49■■□□□ 1.83
SNX1-210ENST00000560260 WNT10BO00744 389 aa26.49■■□□□ 1.83
SNX1-210ENST00000560260 SPDYE6P0CI01 402 aa26.49■■□□□ 1.83
SNX1-210ENST00000560260 PNMA8AQ86V59 439 aaPredicted RBP26.49■■□□□ 1.83
SNX1-210ENST00000560260 OSBPL3Q9H4L5 887 aa26.49■■□□□ 1.83
SNX1-210ENST00000560260 GAKO14976 1311 aa26.48■■□□□ 1.83
SNX1-210ENST00000560260 IDH1O75874 414 aaKnown RBP26.48■■□□□ 1.83
SNX1-210ENST00000560260 DLGAP5Q15398 846 aa26.48■■□□□ 1.83
SNX1-210ENST00000560260 TEKT1Q969V4 418 aa26.48■■□□□ 1.83
SNX1-210ENST00000560260 PRMT6Q96LA8 375 aaPredicted RBP26.48■■□□□ 1.83
SNX1-210ENST00000560260 RBM5P52756 815 aaKnown RBP eCLIP26.47■■□□□ 1.83
SNX1-210ENST00000560260 HHIPL2Q6UWX4 724 aa26.47■■□□□ 1.83
SNX1-210ENST00000560260 ZDHHC15Q96MV8 337 aa26.47■■□□□ 1.83
SNX1-210ENST00000560260 MRIQ9BWK5 157 aa26.47■■□□□ 1.83
SNX1-210ENST00000560260 MROH7-TTC4A0A0A0MT08 1334 aa26.46■■□□□ 1.83
SNX1-210ENST00000560260 MYH7P12883 1935 aa26.46■■□□□ 1.83
SNX1-210ENST00000560260 CHGBP05060 677 aa26.46■■□□□ 1.83
SNX1-210ENST00000560260 TTF1Q15361 905 aaPredicted RBP26.46■■□□□ 1.83
SNX1-210ENST00000560260 APOBEC3HQ6NTF7 200 aaKnown RBP26.46■■□□□ 1.83
SNX1-210ENST00000560260 ADGRA1Q86SQ6 560 aa26.46■■□□□ 1.83
SNX1-210ENST00000560260 LDHDQ86WU2 507 aa26.46■■□□□ 1.83
SNX1-210ENST00000560260 GGA3Q9NZ52 723 aa26.45■■□□□ 1.83
SNX1-210ENST00000560260 PGAP2Q9UHJ9 254 aa26.45■■□□□ 1.83
SNX1-210ENST00000560260 SLFNL1Q499Z3 407 aa26.44■■□□□ 1.82
SNX1-210ENST00000560260 PDE6AP16499 860 aa26.43■■□□□ 1.82
SNX1-210ENST00000560260 ANGEL2Q5VTE6 544 aaKnown RBP26.43■■□□□ 1.82
SNX1-210ENST00000560260 NAA16Q6N069 864 aaPredicted RBP26.43■■□□□ 1.82
SNX1-210ENST00000560260 MAGEB6Q8N7X4 407 aa26.43■■□□□ 1.82
SNX1-210ENST00000560260 FAM163AQ96GL9 167 aaPredicted RBP26.43■■□□□ 1.82
SNX1-210ENST00000560260 CLEC11AQ9Y240 323 aa26.43■■□□□ 1.82
SNX1-210ENST00000560260 CLRN2A0PK11 232 aa26.42■■□□□ 1.82
SNX1-210ENST00000560260 MAP3K12Q12852 859 aa26.42■■□□□ 1.82
SNX1-210ENST00000560260 MAP1SQ66K74 1059 aaPredicted RBP26.42■■□□□ 1.82
SNX1-210ENST00000560260 KBTBD3Q8NAB2 608 aa26.42■■□□□ 1.82
SNX1-210ENST00000560260 ZC3H15Q8WU90 426 aaKnown RBP26.42■■□□□ 1.82
SNX1-210ENST00000560260 TDRD3Q9H7E2 651 aaKnown RBP26.42■■□□□ 1.82
SNX1-210ENST00000560260 SCAF8Q9UPN6 1271 aaKnown RBP26.42■■□□□ 1.82
SNX1-210ENST00000560260 TCRBV5S4A2TA0A5A2 114 aa26.41■■□□□ 1.82
SNX1-210ENST00000560260 GSPT1P15170 499 aaKnown RBP26.41■■□□□ 1.82
SNX1-210ENST00000560260 CYP7A1P22680 504 aa26.41■■□□□ 1.82
SNX1-210ENST00000560260 GSTO1P78417 241 aa26.41■■□□□ 1.82
SNX1-210ENST00000560260 SPDYE2Q495Y8 402 aa26.41■■□□□ 1.82
SNX1-210ENST00000560260 POLR2AP24928 1970 aaKnown RBP26.41■■□□□ 1.82
SNX1-210ENST00000560260 IGSF3O75054 1194 aa26.4■■□□□ 1.82
SNX1-210ENST00000560260 TOMM70O94826 608 aa26.4■■□□□ 1.82
SNX1-210ENST00000560260 BTDP43251 543 aa26.4■■□□□ 1.82
SNX1-210ENST00000560260 TTC22Q5TAA0 569 aa26.4■■□□□ 1.82
SNX1-210ENST00000560260 CHADLQ6NUI6 762 aa26.4■■□□□ 1.82
SNX1-210ENST00000560260 RBM46Q8TBY0 533 aaKnown RBP26.4■■□□□ 1.82
SNX1-210ENST00000560260 ZNF70Q9UC06 446 aaPredicted RBP26.4■■□□□ 1.82
SNX1-210ENST00000560260 GPR75-ASB3A0A0A6YYF3 556 aa26.39■■□□□ 1.82
SNX1-210ENST00000560260 ADD2P35612 726 aa26.39■■□□□ 1.82
SNX1-210ENST00000560260 SLC9C2Q5TAH2 1124 aa26.39■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 164.8 ms