RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 GTF2IP78347 998 aa13.44□□□□□ -0.26
USP3-218ENST00000560202 AOC3Q16853 763 aa13.44□□□□□ -0.26
USP3-218ENST00000560202 ADGRA1Q86SQ6 560 aa13.44□□□□□ -0.26
USP3-218ENST00000560202 ZNF384Q8TF68 577 aa13.44□□□□□ -0.26
USP3-218ENST00000560202 AIDAQ96BJ3 306 aa13.44□□□□□ -0.26
USP3-218ENST00000560202 DBNDD1Q9H9R9 158 aa13.44□□□□□ -0.26
USP3-218ENST00000560202 U3KPZ7 1027 aaPredicted RBP13.44□□□□□ -0.26
USP3-218ENST00000560202 PPIP5K2O43314 1243 aa13.43□□□□□ -0.26
USP3-218ENST00000560202 MBD4O95243 580 aa13.43□□□□□ -0.26
USP3-218ENST00000560202 MFSD14BQ5SR56 506 aa13.43□□□□□ -0.26
USP3-218ENST00000560202 CREB3L3Q68CJ9 461 aa13.43□□□□□ -0.26
USP3-218ENST00000560202 DZIP1Q86YF9 867 aaKnown RBP13.43□□□□□ -0.26
USP3-218ENST00000560202 NLGN2Q8NFZ4 835 aa13.43□□□□□ -0.26
USP3-218ENST00000560202 KCNB2Q92953 911 aa13.43□□□□□ -0.26
USP3-218ENST00000560202 IL17RAQ96F46 866 aa13.43□□□□□ -0.26
USP3-218ENST00000560202 STRBPQ96SI9 672 aaKnown RBP13.43□□□□□ -0.26
USP3-218ENST00000560202 SNX14Q9Y5W7 946 aa13.43□□□□□ -0.26
USP3-218ENST00000560202 MYO5AQ9Y4I1 1855 aaKnown RBP13.43□□□□□ -0.26
USP3-218ENST00000560202 MYH7P12883 1935 aa13.42□□□□□ -0.26
USP3-218ENST00000560202 SLC27A2O14975 620 aa13.42□□□□□ -0.26
USP3-218ENST00000560202 ECE2O60344 883 aa13.42□□□□□ -0.26
USP3-218ENST00000560202 RABEP1Q15276 862 aa13.42□□□□□ -0.26
USP3-218ENST00000560202 GRIK5Q16478 980 aa13.42□□□□□ -0.26
USP3-218ENST00000560202 TTLL5Q6EMB2 1281 aa13.42□□□□□ -0.26
USP3-218ENST00000560202 RASEFQ8IZ41 740 aa13.42□□□□□ -0.26
USP3-218ENST00000560202 MIGA1Q8NAN2 632 aa13.42□□□□□ -0.26
USP3-218ENST00000560202 ARMT1Q9H993 441 aa13.42□□□□□ -0.26
USP3-218ENST00000560202 BCS1LQ9Y276 419 aa13.42□□□□□ -0.26
USP3-218ENST00000560202 MYH13Q9UKX3 1938 aa13.42□□□□□ -0.26
USP3-218ENST00000560202 MAGEB6P1A0A0J9YX57 407 aa13.41□□□□□ -0.26
USP3-218ENST00000560202 FOXP2O15409 715 aa13.41□□□□□ -0.26
USP3-218ENST00000560202 ZKSCAN1P17029 563 aaPredicted RBP13.41□□□□□ -0.26
USP3-218ENST00000560202 RNF20Q5VTR2 975 aa13.41□□□□□ -0.26
USP3-218ENST00000560202 LCORLQ8N3X6 602 aa13.41□□□□□ -0.26
USP3-218ENST00000560202 FBXW7Q969H0 707 aa13.41□□□□□ -0.26
USP3-218ENST00000560202 VPS33BQ9H267 617 aa13.41□□□□□ -0.26
USP3-218ENST00000560202 GNAT2P19087 354 aa13.4□□□□□ -0.26
USP3-218ENST00000560202 GSTO1P78417 241 aa13.4□□□□□ -0.26
USP3-218ENST00000560202 RIOK1Q9BRS2 568 aaKnown RBP13.4□□□□□ -0.26
USP3-218ENST00000560202 KCNQ5Q9NR82 932 aa13.4□□□□□ -0.26
USP3-218ENST00000560202 ZNF277Q9NRM2 450 aaPredicted RBP13.4□□□□□ -0.26
USP3-218ENST00000560202 SUGT1Q9Y2Z0 365 aa13.4□□□□□ -0.26
USP3-218ENST00000560202 STRIP1Q5VSL9 837 aa13.4□□□□□ -0.26
USP3-218ENST00000560202 LARGE2Q8N3Y3 721 aa13.4□□□□□ -0.26
USP3-218ENST00000560202 CERS5Q8N5B7 392 aa13.4□□□□□ -0.26
USP3-218ENST00000560202 FHDC1Q9C0D6 1143 aaPredicted RBP13.4□□□□□ -0.26
USP3-218ENST00000560202 CTNNA3Q9UI47 895 aa13.4□□□□□ -0.26
USP3-218ENST00000560202 BRCA1P38398 1863 aaKnown RBP13.39□□□□□ -0.27
USP3-218ENST00000560202 PATL2C9JE40 543 aaKnown RBP13.39□□□□□ -0.27
USP3-218ENST00000560202 FGAP02671 866 aa13.39□□□□□ -0.27
USP3-218ENST00000560202 APPP05067 770 aa13.39□□□□□ -0.27
USP3-218ENST00000560202 LDHCP07864 332 aa13.39□□□□□ -0.27
USP3-218ENST00000560202 DYNLL1P63167 89 aaKnown RBP13.39□□□□□ -0.27
USP3-218ENST00000560202 TAOK3Q9H2K8 898 aa13.39□□□□□ -0.27
USP3-218ENST00000560202 SLC4A4Q9Y6R1 1079 aa13.39□□□□□ -0.27
USP3-218ENST00000560202 USP17L3A6NCW0 530 aa13.38□□□□□ -0.27
USP3-218ENST00000560202 USP17L4A6NCW7 530 aa13.38□□□□□ -0.27
USP3-218ENST00000560202 NFKBIEO00221 500 aa13.38□□□□□ -0.27
USP3-218ENST00000560202 PRKAB2O43741 272 aa13.38□□□□□ -0.27
USP3-218ENST00000560202 CYP21A2P08686 494 aa13.38□□□□□ -0.27
USP3-218ENST00000560202 IARSP41252 1262 aaKnown RBP13.38□□□□□ -0.27
USP3-218ENST00000560202 FKBP1AP62942 108 aaKnown RBP13.38□□□□□ -0.27
USP3-218ENST00000560202 BECN1Q14457 450 aa13.38□□□□□ -0.27
USP3-218ENST00000560202 DIXDC1Q155Q3 683 aa13.38□□□□□ -0.27
USP3-218ENST00000560202 TSGA10IPQ3SY00 556 aa13.38□□□□□ -0.27
USP3-218ENST00000560202 USP17L1Q7RTZ2 530 aa13.38□□□□□ -0.27
USP3-218ENST00000560202 SLF2Q8IX21 1173 aa13.38□□□□□ -0.27
USP3-218ENST00000560202 MXD3Q9BW11 206 aa13.38□□□□□ -0.27
USP3-218ENST00000560202 AATFQ9NY61 560 aaKnown RBP eCLIP13.38□□□□□ -0.27
USP3-218ENST00000560202 MROH7-TTC4A0A0A0MT08 1334 aa13.37□□□□□ -0.27
USP3-218ENST00000560202 YDJCA8MPS7 323 aa13.37□□□□□ -0.27
USP3-218ENST00000560202 GSG1L2A8MUP6 293 aa13.37□□□□□ -0.27
USP3-218ENST00000560202 ALX1Q15699 326 aa13.37□□□□□ -0.27
USP3-218ENST00000560202 ADCK5Q3MIX3 580 aa13.37□□□□□ -0.27
USP3-218ENST00000560202 DACT2Q5SW24 774 aa13.37□□□□□ -0.27
USP3-218ENST00000560202 IFNL3Q8IZI9 196 aa13.37□□□□□ -0.27
USP3-218ENST00000560202 SNX21Q969T3 373 aa13.37□□□□□ -0.27
USP3-218ENST00000560202 TM6SF1Q9BZW5 370 aa13.37□□□□□ -0.27
USP3-218ENST00000560202 TAF6LQ9Y6J9 622 aa13.37□□□□□ -0.27
USP3-218ENST00000560202 MAST2Q6P0Q8 1798 aa13.37□□□□□ -0.27
USP3-218ENST00000560202 RPAP1Q9BWH6 1393 aaPredicted RBP13.37□□□□□ -0.27
USP3-218ENST00000560202 BAG3O95817 575 aa13.37□□□□□ -0.27
USP3-218ENST00000560202 NEK4P51957 841 aa13.37□□□□□ -0.27
USP3-218ENST00000560202 KRT32Q14532 448 aa13.37□□□□□ -0.27
USP3-218ENST00000560202 IMMTQ16891 758 aaKnown RBP13.37□□□□□ -0.27
USP3-218ENST00000560202 FAM163AQ96GL9 167 aaPredicted RBP13.37□□□□□ -0.27
USP3-218ENST00000560202 JAKMIP1Q96N16 626 aaKnown RBP13.37□□□□□ -0.27
USP3-218ENST00000560202 TBC1D2Q9BYX2 928 aa13.37□□□□□ -0.27
USP3-218ENST00000560202 NACAP1Q9BZK3 213 aa13.37□□□□□ -0.27
USP3-218ENST00000560202 EPB41L4AQ9HCS5 686 aaPredicted RBP13.37□□□□□ -0.27
USP3-218ENST00000560202 TTF2Q9UNY4 1162 aaKnown RBP13.37□□□□□ -0.27
USP3-218ENST00000560202 CHD4Q14839 1912 aa13.37□□□□□ -0.27
USP3-218ENST00000560202 ZMYM6O95789 1325 aa13.36□□□□□ -0.27
USP3-218ENST00000560202 LTBP3Q9NS15 1303 aa13.36□□□□□ -0.27
USP3-218ENST00000560202 GOLGB1Q14789 3259 aaKnown RBP13.36□□□□□ -0.27
USP3-218ENST00000560202 F8W031 263 aaPredicted RBP13.36□□□□□ -0.27
USP3-218ENST00000560202 ST18O60284 1047 aa13.36□□□□□ -0.27
USP3-218ENST00000560202 PSMA5P28066 241 aa13.36□□□□□ -0.27
USP3-218ENST00000560202 PPP4CP60510 307 aa13.36□□□□□ -0.27
USP3-218ENST00000560202 NIM1KQ8IY84 436 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms