RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 RNASE1P07998 156 aaKnown RBP2.8□□□□□ -1.96
USP3-209ENST00000558925 ACPPP15309 386 aa2.8□□□□□ -1.96
USP3-209ENST00000558925 CD96P40200 585 aa2.8□□□□□ -1.96
USP3-209ENST00000558925 BNIP3Q12983 259 aa2.8□□□□□ -1.96
USP3-209ENST00000558925 NAA30Q147X3 362 aaPredicted RBP2.8□□□□□ -1.96
USP3-209ENST00000558925 ZNF765Q7L2R6 523 aa2.8□□□□□ -1.96
USP3-209ENST00000558925 ATG4DQ86TL0 474 aaPredicted RBP2.8□□□□□ -1.96
USP3-209ENST00000558925 NLRP13Q86W25 1043 aa2.8□□□□□ -1.96
USP3-209ENST00000558925 ETFBKMTQ8IXQ9 262 aa2.8□□□□□ -1.96
USP3-209ENST00000558925 GIMAP7Q8NHV1 300 aa2.8□□□□□ -1.96
USP3-209ENST00000558925 GTF3C2Q8WUA4 911 aaPredicted RBP2.8□□□□□ -1.96
USP3-209ENST00000558925 TMEM40Q8WWA1 233 aa2.8□□□□□ -1.96
USP3-209ENST00000558925 TBC1D32Q96NH3 1257 aa2.8□□□□□ -1.96
USP3-209ENST00000558925 HHIPQ96QV1 700 aa2.8□□□□□ -1.96
USP3-209ENST00000558925 TMPRSS13Q9BYE2 586 aa2.8□□□□□ -1.96
USP3-209ENST00000558925 PBX4Q9BYU1 374 aa2.8□□□□□ -1.96
USP3-209ENST00000558925 ADAM19Q9H013 955 aa2.8□□□□□ -1.96
USP3-209ENST00000558925 LRRC4CQ9HCJ2 640 aa2.8□□□□□ -1.96
USP3-209ENST00000558925 NFKBIEO00221 500 aa2.79□□□□□ -1.96
USP3-209ENST00000558925 ICMTO60725 284 aa2.79□□□□□ -1.96
USP3-209ENST00000558925 SMNDC1O75940 238 aaKnown RBP eCLIP2.79□□□□□ -1.964e-9■■■□□ 17.4
USP3-209ENST00000558925 KIF4AO95239 1232 aa2.79□□□□□ -1.96
USP3-209ENST00000558925 KRT1P04264 644 aa2.79□□□□□ -1.96
USP3-209ENST00000558925 FAM117BQ6P1L5 589 aa2.79□□□□□ -1.96
USP3-209ENST00000558925 LRRC56Q8IYG6 542 aaPredicted RBP2.79□□□□□ -1.96
USP3-209ENST00000558925 CEP120Q8N960 986 aa2.79□□□□□ -1.96
USP3-209ENST00000558925 C12orf50Q8NA57 414 aaPredicted RBP2.79□□□□□ -1.96
USP3-209ENST00000558925 C2CD4AQ8NCU7 369 aaPredicted RBP2.79□□□□□ -1.96
USP3-209ENST00000558925 SMG8Q8ND04 991 aaKnown RBP2.79□□□□□ -1.96
USP3-209ENST00000558925 LRRN4CLQ8ND94 238 aa2.79□□□□□ -1.96
USP3-209ENST00000558925 EZH1Q92800 747 aaPredicted RBP2.79□□□□□ -1.96
USP3-209ENST00000558925 METTL22Q9BUU2 404 aaPredicted RBP2.79□□□□□ -1.96
USP3-209ENST00000558925 SAP130Q9H0E3 1048 aa2.79□□□□□ -1.96
USP3-209ENST00000558925 U3KQE9 123 aa2.79□□□□□ -1.96
USP3-209ENST00000558925 ZNF503-AS2A6NEH8 195 aa2.78□□□□□ -1.96
USP3-209ENST00000558925 IQCJ-SCHIP1C9J366 451 aaPredicted RBP2.78□□□□□ -1.96
USP3-209ENST00000558925 BIN1O00499 593 aa2.78□□□□□ -1.96
USP3-209ENST00000558925 TRPA1O75762 1119 aa2.78□□□□□ -1.96
USP3-209ENST00000558925 CD8BP10966 210 aa2.78□□□□□ -1.96
USP3-209ENST00000558925 FUT4P22083 530 aa2.78□□□□□ -1.96
USP3-209ENST00000558925 KRTAP10-2P60368 255 aa2.78□□□□□ -1.96
USP3-209ENST00000558925 PIP4K2BP78356 416 aa2.78□□□□□ -1.96
USP3-209ENST00000558925 ARHGAP4P98171 946 aa2.78□□□□□ -1.96
USP3-209ENST00000558925 TAGLNQ01995 201 aaKnown RBP2.78□□□□□ -1.96
USP3-209ENST00000558925 HYAL2Q12891 473 aa2.78□□□□□ -1.96
USP3-209ENST00000558925 PAOXQ6QHF9 649 aa2.78□□□□□ -1.96
USP3-209ENST00000558925 NPAS4Q8IUM7 802 aa2.78□□□□□ -1.96
USP3-209ENST00000558925 GLYCTKQ8IVS8 523 aa2.78□□□□□ -1.96
USP3-209ENST00000558925 SLC7A3Q8WY07 619 aa2.78□□□□□ -1.96
USP3-209ENST00000558925 WNT8BQ93098 351 aa2.78□□□□□ -1.96
USP3-209ENST00000558925 FAM84AQ96KN4 292 aa2.78□□□□□ -1.96
USP3-209ENST00000558925 SUGCTQ9HAC7 445 aa2.78□□□□□ -1.96
USP3-209ENST00000558925 RC3H2Q9HBD1 1191 aaKnown RBP2.78□□□□□ -1.96
USP3-209ENST00000558925 EGFL7Q9UHF1 273 aa2.78□□□□□ -1.96
USP3-209ENST00000558925 SLC5A6Q9Y289 635 aa2.78□□□□□ -1.96
USP3-209ENST00000558925 LOC100289279A0A1B0GTE1 492 aa2.77□□□□□ -1.97
USP3-209ENST00000558925 ANKRD33BA6NCL7 494 aa2.77□□□□□ -1.97
USP3-209ENST00000558925 TNFRSF10BO14763 440 aa2.77□□□□□ -1.97
USP3-209ENST00000558925 DYNC1LI2O43237 492 aaPredicted RBP2.77□□□□□ -1.97
USP3-209ENST00000558925 ZSCAN22P10073 491 aaPredicted RBP2.77□□□□□ -1.97
USP3-209ENST00000558925 PTPRAP18433 802 aa2.77□□□□□ -1.97
USP3-209ENST00000558925 MPSTP25325 297 aa2.77□□□□□ -1.97
USP3-209ENST00000558925 MAPK1P28482 360 aa2.77□□□□□ -1.97
USP3-209ENST00000558925 COX20Q5RI15 118 aa2.77□□□□□ -1.97
USP3-209ENST00000558925 NUTM2GQ5VZR2 741 aa2.77□□□□□ -1.97
USP3-209ENST00000558925 BHLHE22Q8NFJ8 381 aaPredicted RBP2.77□□□□□ -1.97
USP3-209ENST00000558925 HELQQ8TDG4 1101 aa2.77□□□□□ -1.97
USP3-209ENST00000558925 GIPC2Q8TF65 315 aa2.77□□□□□ -1.97
USP3-209ENST00000558925 C20orf173Q96LM9 149 aa2.77□□□□□ -1.97
USP3-209ENST00000558925 TOX2Q96NM4 488 aa2.77□□□□□ -1.97
USP3-209ENST00000558925 SLC38A3Q99624 504 aa2.77□□□□□ -1.97
USP3-209ENST00000558925 OSGEPQ9NPF4 335 aa2.77□□□□□ -1.97
USP3-209ENST00000558925 CRIM1Q9NZV1 1036 aa2.77□□□□□ -1.97
USP3-209ENST00000558925 KIAA1522Q9P206 1035 aaPredicted RBP2.77□□□□□ -1.97
USP3-209ENST00000558925 AMOTL2Q9Y2J4 779 aa2.77□□□□□ -1.97
USP3-209ENST00000558925 RBM47A0AV96 593 aaKnown RBP2.76□□□□□ -1.97
USP3-209ENST00000558925 LRRC10BA6NIK2 292 aa2.76□□□□□ -1.97
USP3-209ENST00000558925 E9PSI1 815 aa2.76□□□□□ -1.97
USP3-209ENST00000558925 UBAP1LF5GYI3 381 aa2.76□□□□□ -1.97
USP3-209ENST00000558925 FOXO3O43524 673 aa2.76□□□□□ -1.97
USP3-209ENST00000558925 TSPAN15O95858 294 aa2.76□□□□□ -1.97
USP3-209ENST00000558925 NFICP08651 508 aa2.76□□□□□ -1.97
USP3-209ENST00000558925 ZNF16P17020 682 aaPredicted RBP2.76□□□□□ -1.97
USP3-209ENST00000558925 RAP1GAPP47736 663 aa2.76□□□□□ -1.97
USP3-209ENST00000558925 FKBP4Q02790 459 aaKnown RBP eCLIP2.76□□□□□ -1.97
USP3-209ENST00000558925 C16orf46Q6P387 395 aa2.76□□□□□ -1.97
USP3-209ENST00000558925 ATCAYQ86WG3 371 aa2.76□□□□□ -1.97
USP3-209ENST00000558925 SIAH1Q8IUQ4 282 aa2.76□□□□□ -1.97
USP3-209ENST00000558925 PLD6Q8N2A8 252 aaKnown RBP2.76□□□□□ -1.97
USP3-209ENST00000558925 SPACA7Q96KW9 195 aa2.76□□□□□ -1.97
USP3-209ENST00000558925 BCL2L13Q9BXK5 485 aa2.76□□□□□ -1.97
USP3-209ENST00000558925 C1GALT1Q9NS00 363 aa2.76□□□□□ -1.97
USP3-209ENST00000558925 CCDC87Q9NVE4 849 aa2.76□□□□□ -1.97
USP3-209ENST00000558925 SOX13Q9UN79 622 aa2.76□□□□□ -1.97
USP3-209ENST00000558925 SOX1O00570 391 aaPredicted RBP2.75□□□□□ -1.97
USP3-209ENST00000558925 ZBTB39O15060 712 aa2.75□□□□□ -1.97
USP3-209ENST00000558925 INHBBP09529 407 aa2.75□□□□□ -1.97
USP3-209ENST00000558925 USP11P51784 963 aa2.75□□□□□ -1.97
USP3-209ENST00000558925 SOX4Q06945 474 aaPredicted RBP2.75□□□□□ -1.97
USP3-209ENST00000558925 SF3B2Q13435 895 aaKnown RBP2.75□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms