RNA–Protein interactions for RNA: ENST00000558868.5

TPM1-215, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 653 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-215ENST00000558868 SALL1Q9NSC2 1324 aa16.38■□□□□ 0.21
TPM1-215ENST00000558868 MYH13Q9UKX3 1938 aa16.37■□□□□ 0.21
TPM1-215ENST00000558868 WTIPA6NIX2 430 aaPredicted RBP16.37■□□□□ 0.21
TPM1-215ENST00000558868 H0YIN7 160 aa16.37■□□□□ 0.21
TPM1-215ENST00000558868 ZNF213O14771 459 aa16.37■□□□□ 0.21
TPM1-215ENST00000558868 FGAP02671 866 aa16.37■□□□□ 0.21
TPM1-215ENST00000558868 APPP05067 770 aa16.37■□□□□ 0.21
TPM1-215ENST00000558868 TDRD7Q8NHU6 1098 aaKnown RBP16.37■□□□□ 0.21
TPM1-215ENST00000558868 FOXD4L1Q9NU39 408 aa16.37■□□□□ 0.21
TPM1-215ENST00000558868 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.37■□□□□ 0.21
TPM1-215ENST00000558868 MYO5AQ9Y4I1 1855 aaKnown RBP16.37■□□□□ 0.21
TPM1-215ENST00000558868 COL1A1P02452 1464 aaPredicted RBP16.36■□□□□ 0.21
TPM1-215ENST00000558868 DUOX1Q9NRD9 1551 aa16.36■□□□□ 0.21
TPM1-215ENST00000558868 E7EWF7 191 aa16.36■□□□□ 0.21
TPM1-215ENST00000558868 MBD4O95243 580 aa16.36■□□□□ 0.21
TPM1-215ENST00000558868 NAA16Q6N069 864 aaPredicted RBP16.36■□□□□ 0.21
TPM1-215ENST00000558868 NOL8Q76FK4 1167 aaKnown RBP16.36■□□□□ 0.21
TPM1-215ENST00000558868 DHX32Q7L7V1 743 aaKnown RBP16.36■□□□□ 0.21
TPM1-215ENST00000558868 C2CD5Q86YS7 1000 aa16.36■□□□□ 0.21
TPM1-215ENST00000558868 TBC1D16Q8TBP0 767 aa16.36■□□□□ 0.21
TPM1-215ENST00000558868 MAGEB6P1A0A0J9YX57 407 aa16.35■□□□□ 0.21
TPM1-215ENST00000558868 CPA1P15085 419 aa16.35■□□□□ 0.21
TPM1-215ENST00000558868 CHAF1AQ13111 956 aaPredicted RBP16.35■□□□□ 0.21
TPM1-215ENST00000558868 TXNRD3Q86VQ6 643 aa16.35■□□□□ 0.21
TPM1-215ENST00000558868 PPP1R1BQ9UD71 204 aaPredicted RBP16.35■□□□□ 0.21
TPM1-215ENST00000558868 C6orf229H3BNL8 230 aa16.34■□□□□ 0.21
TPM1-215ENST00000558868 FOXP2O15409 715 aa16.34■□□□□ 0.21
TPM1-215ENST00000558868 IL1R1P14778 569 aa16.34■□□□□ 0.21
TPM1-215ENST00000558868 GSTO1P78417 241 aa16.34■□□□□ 0.21
TPM1-215ENST00000558868 FGD1P98174 961 aa16.34■□□□□ 0.21
TPM1-215ENST00000558868 RAB3GAP1Q15042 981 aa16.34■□□□□ 0.21
TPM1-215ENST00000558868 NFKBIBQ15653 356 aa16.34■□□□□ 0.21
TPM1-215ENST00000558868 MPNDQ8N594 471 aa16.34■□□□□ 0.21
TPM1-215ENST00000558868 CNKSR1Q969H4 720 aa16.34■□□□□ 0.21
TPM1-215ENST00000558868 CHMP4CQ96CF2 233 aa16.34■□□□□ 0.21
TPM1-215ENST00000558868 NAPBQ9H115 298 aa16.34■□□□□ 0.21
TPM1-215ENST00000558868 ARMT1Q9H993 441 aa16.34■□□□□ 0.21
TPM1-215ENST00000558868 TRDNQ13061 729 aa16.33■□□□□ 0.2
TPM1-215ENST00000558868 TTLL5Q6EMB2 1281 aa16.33■□□□□ 0.2
TPM1-215ENST00000558868 RALYLQ86SE5 291 aaKnown RBP16.33■□□□□ 0.2
TPM1-215ENST00000558868 NCOA7Q8NI08 942 aa16.33■□□□□ 0.2
TPM1-215ENST00000558868 ZNF622Q969S3 477 aaKnown RBP eCLIP16.33■□□□□ 0.26e-7■■□□□ 14
TPM1-215ENST00000558868 NSUN4Q96CB9 384 aaKnown RBP16.33■□□□□ 0.2
TPM1-215ENST00000558868 EYA3Q99504 573 aa16.33■□□□□ 0.2
TPM1-215ENST00000558868 CD209Q9NNX6 404 aa16.33■□□□□ 0.2
TPM1-215ENST00000558868 TAF6LQ9Y6J9 622 aa16.33■□□□□ 0.2
TPM1-215ENST00000558868 SLC4A4Q9Y6R1 1079 aa16.33■□□□□ 0.2
TPM1-215ENST00000558868 WDR19Q8NEZ3 1342 aa16.33■□□□□ 0.2
TPM1-215ENST00000558868 MAST2Q6P0Q8 1798 aa16.33■□□□□ 0.2
TPM1-215ENST00000558868 LDHBP07195 334 aaKnown RBP16.32■□□□□ 0.2
TPM1-215ENST00000558868 LDHCP07864 332 aa16.32■□□□□ 0.2
TPM1-215ENST00000558868 EXOSC10Q01780 885 aaKnown RBP16.32■□□□□ 0.2
TPM1-215ENST00000558868 MECOMQ03112 1051 aa16.32■□□□□ 0.2
TPM1-215ENST00000558868 NBR1Q14596 966 aa16.32■□□□□ 0.2
TPM1-215ENST00000558868 DPP8Q6V1X1 898 aaPredicted RBP16.32■□□□□ 0.2
TPM1-215ENST00000558868 STOX1Q6ZVD7 989 aa16.32■□□□□ 0.2
TPM1-215ENST00000558868 DZIP1Q86YF9 867 aaKnown RBP16.32■□□□□ 0.2
TPM1-215ENST00000558868 CERS3Q8IU89 383 aa16.32■□□□□ 0.2
TPM1-215ENST00000558868 IFNL3Q8IZI9 196 aa16.32■□□□□ 0.2
TPM1-215ENST00000558868 TBC1D22AQ8WUA7 517 aa16.32■□□□□ 0.2
TPM1-215ENST00000558868 GBP4Q96PP9 640 aa16.32■□□□□ 0.2
TPM1-215ENST00000558868 COA1Q9GZY4 146 aa16.32■□□□□ 0.2
TPM1-215ENST00000558868 POLLQ9UGP5 575 aa16.32■□□□□ 0.2
TPM1-215ENST00000558868 PDIA4P13667 645 aaKnown RBP16.31■□□□□ 0.2
TPM1-215ENST00000558868 TDO2P48775 406 aa16.31■□□□□ 0.2
TPM1-215ENST00000558868 CC2D2BQ6DHV5 1058 aa16.31■□□□□ 0.2
TPM1-215ENST00000558868 GIMAP6Q6P9H5 292 aa16.31■□□□□ 0.2
TPM1-215ENST00000558868 Q6ZUG5 572 aa16.31■□□□□ 0.2
TPM1-215ENST00000558868 LCORLQ8N3X6 602 aa16.31■□□□□ 0.2
TPM1-215ENST00000558868 FBXL16Q8N461 479 aa16.31■□□□□ 0.2
TPM1-215ENST00000558868 ZC3H12CQ9C0D7 883 aaKnown RBP16.31■□□□□ 0.2
TPM1-215ENST00000558868 CACNA1SQ13698 1873 aa16.31■□□□□ 0.2
TPM1-215ENST00000558868 CCDC88AQ3V6T2 1871 aa16.31■□□□□ 0.2
TPM1-215ENST00000558868 COL11A2P13942 1736 aaPredicted RBP16.31■□□□□ 0.2
TPM1-215ENST00000558868 LTBP1Q14766 1721 aa16.31■□□□□ 0.2
TPM1-215ENST00000558868 GSG1L2A8MUP6 293 aa16.3■□□□□ 0.2
TPM1-215ENST00000558868 PTMSP20962 102 aa16.3■□□□□ 0.2
TPM1-215ENST00000558868 MCM5P33992 734 aa16.3■□□□□ 0.2
TPM1-215ENST00000558868 HAND2P61296 217 aa16.3■□□□□ 0.2
TPM1-215ENST00000558868 TOB2Q14106 344 aaPredicted RBP16.3■□□□□ 0.2
TPM1-215ENST00000558868 GRIPAP1Q4V328 841 aa16.3■□□□□ 0.2
TPM1-215ENST00000558868 SLF2Q8IX21 1173 aa16.3■□□□□ 0.2
TPM1-215ENST00000558868 MIGA1Q8NAN2 632 aa16.3■□□□□ 0.2
TPM1-215ENST00000558868 RIOK1Q9BRS2 568 aaKnown RBP16.3■□□□□ 0.2
TPM1-215ENST00000558868 NOL10Q9BSC4 688 aaKnown RBP16.3■□□□□ 0.2
TPM1-215ENST00000558868 CRNKL1Q9BZJ0 848 aaKnown RBP16.3■□□□□ 0.2
TPM1-215ENST00000558868 CNNM2Q9H8M5 875 aa16.3■□□□□ 0.2
TPM1-215ENST00000558868 TPCN1Q9ULQ1 816 aa16.3■□□□□ 0.2
TPM1-215ENST00000558868 SMC3Q9UQE7 1217 aa16.3■□□□□ 0.2
TPM1-215ENST00000558868 LAMA4Q16363 1823 aa16.29■□□□□ 0.2
TPM1-215ENST00000558868 FAM205AQ6ZU69 1335 aa16.29■□□□□ 0.2
TPM1-215ENST00000558868 ME3Q16798 604 aa16.29■□□□□ 0.2
TPM1-215ENST00000558868 AGXT2Q9BYV1 514 aa16.29■□□□□ 0.2
TPM1-215ENST00000558868 RNF41Q9H4P4 317 aaPredicted RBP16.29■□□□□ 0.2
TPM1-215ENST00000558868 KIAA1551Q9HCM1 1747 aa16.28■□□□□ 0.2
TPM1-215ENST00000558868 G3V3G9 751 aa16.28■□□□□ 0.2
TPM1-215ENST00000558868 BAG3O95817 575 aa16.28■□□□□ 0.2
TPM1-215ENST00000558868 PRDX5P30044 214 aa16.28■□□□□ 0.2
TPM1-215ENST00000558868 DCAF8Q5TAQ9 597 aa16.28■□□□□ 0.2
TPM1-215ENST00000558868 ADGRA1Q86SQ6 560 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms