RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 NALCNQ8IZF0 1738 aa6.11□□□□□ -1.43
SPG11-211ENST00000558561 NKTRP30414 1462 aaKnown RBP6.11□□□□□ -1.43
SPG11-211ENST00000558561 NRXN1Q9ULB1 1477 aa6.11□□□□□ -1.43
SPG11-211ENST00000558561 MST1RQ04912 1400 aa6.11□□□□□ -1.43
SPG11-211ENST00000558561 YTHDC2Q9H6S0 1430 aaKnown RBP6.11□□□□□ -1.43
SPG11-211ENST00000558561 ABCC11Q96J66 1382 aa6.11□□□□□ -1.43
SPG11-211ENST00000558561 NEURL1BA8MQ27 555 aa6.11□□□□□ -1.43
SPG11-211ENST00000558561 SLURP2P0DP57 97 aa6.11□□□□□ -1.43
SPG11-211ENST00000558561 PCSK2P16519 638 aa6.11□□□□□ -1.43
SPG11-211ENST00000558561 NFKB1P19838 968 aa6.11□□□□□ -1.43
SPG11-211ENST00000558561 SND1Q7KZF4 910 aaKnown RBP eCLIP6.11□□□□□ -1.43
SPG11-211ENST00000558561 PMFBP1Q8TBY8 1022 aa6.11□□□□□ -1.43
SPG11-211ENST00000558561 PNMA5Q96PV4 448 aa6.11□□□□□ -1.43
SPG11-211ENST00000558561 OXCT2Q9BYC2 517 aaPredicted RBP6.11□□□□□ -1.43
SPG11-211ENST00000558561 IGFLR1Q9H665 355 aa6.11□□□□□ -1.43
SPG11-211ENST00000558561 C11orf16Q9NQ32 467 aa6.11□□□□□ -1.43
SPG11-211ENST00000558561 GGA1Q9UJY5 639 aa6.11□□□□□ -1.43
SPG11-211ENST00000558561 FNDC3AQ9Y2H6 1198 aaKnown RBP6.11□□□□□ -1.43
SPG11-211ENST00000558561 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.11□□□□□ -1.43
SPG11-211ENST00000558561 WIPF1O43516 503 aa6.1□□□□□ -1.43
SPG11-211ENST00000558561 ARAFP10398 606 aa6.1□□□□□ -1.43
SPG11-211ENST00000558561 LYPD4Q6UWN0 246 aa6.1□□□□□ -1.43
SPG11-211ENST00000558561 C1orf229Q6ZS94 237 aaPredicted RBP6.1□□□□□ -1.43
SPG11-211ENST00000558561 GJD3Q8N144 294 aa6.1□□□□□ -1.43
SPG11-211ENST00000558561 TTC16Q8NEE8 873 aa6.1□□□□□ -1.43
SPG11-211ENST00000558561 ELP3Q9H9T3 547 aa6.1□□□□□ -1.43
SPG11-211ENST00000558561 DIP2AQ14689 1571 aa6.1□□□□□ -1.43
SPG11-211ENST00000558561 C1orf167Q5SNV9 1468 aa6.09□□□□□ -1.43
SPG11-211ENST00000558561 PRR36Q9H6K5 1346 aa6.09□□□□□ -1.43
SPG11-211ENST00000558561 NDUFB5O43674 189 aa6.09□□□□□ -1.43
SPG11-211ENST00000558561 MMP20O60882 483 aa6.09□□□□□ -1.43
SPG11-211ENST00000558561 RARAP10276 462 aa6.09□□□□□ -1.43
SPG11-211ENST00000558561 ADH6P28332 368 aa6.09□□□□□ -1.43
SPG11-211ENST00000558561 MAPK1P28482 360 aa6.09□□□□□ -1.43
SPG11-211ENST00000558561 NLRP13Q86W25 1043 aa6.09□□□□□ -1.43
SPG11-211ENST00000558561 FCHSD1Q86WN1 690 aa6.09□□□□□ -1.43
SPG11-211ENST00000558561 TMC1Q8TDI8 760 aa6.09□□□□□ -1.43
SPG11-211ENST00000558561 TMEM63CQ9P1W3 806 aa6.09□□□□□ -1.43
SPG11-211ENST00000558561 POGKQ9P215 609 aa6.09□□□□□ -1.43
SPG11-211ENST00000558561 DCTN4Q9UJW0 460 aa6.09□□□□□ -1.43
SPG11-211ENST00000558561 ADGRB1O14514 1584 aa6.09□□□□□ -1.43
SPG11-211ENST00000558561 ADGRL3Q9HAR2 1447 aa6.08□□□□□ -1.44
SPG11-211ENST00000558561 NCOA3Q9Y6Q9 1424 aa6.08□□□□□ -1.44
SPG11-211ENST00000558561 PHLPP1O60346 1717 aa6.08□□□□□ -1.44
SPG11-211ENST00000558561 SIN3BO75182 1162 aa6.08□□□□□ -1.44
SPG11-211ENST00000558561 MAP3K6O95382 1288 aa6.08□□□□□ -1.44
SPG11-211ENST00000558561 RPLP1P05386 114 aaKnown RBP6.08□□□□□ -1.44
SPG11-211ENST00000558561 CELA2BP08218 269 aaPredicted RBP6.08□□□□□ -1.44
SPG11-211ENST00000558561 LORP23490 312 aaPredicted RBP6.08□□□□□ -1.44
SPG11-211ENST00000558561 USP5P45974 858 aa6.08□□□□□ -1.44
SPG11-211ENST00000558561 MARSP56192 900 aaKnown RBP6.08□□□□□ -1.44
SPG11-211ENST00000558561 TBC1D8BQ0IIM8 1120 aa6.08□□□□□ -1.44
SPG11-211ENST00000558561 ZNF438Q7Z4V0 828 aa6.08□□□□□ -1.44
SPG11-211ENST00000558561 AVENQ9NQS1 362 aaPredicted RBP6.08□□□□□ -1.44
SPG11-211ENST00000558561 CNTN3Q9P232 1028 aa6.08□□□□□ -1.44
SPG11-211ENST00000558561 BCRP11274 1271 aa6.07□□□□□ -1.44
SPG11-211ENST00000558561 MLLT1Q03111 559 aaPredicted RBP6.07□□□□□ -1.44
SPG11-211ENST00000558561 ZNF385CQ66K41 422 aaPredicted RBP6.07□□□□□ -1.44
SPG11-211ENST00000558561 PDE12Q6L8Q7 609 aaKnown RBP6.07□□□□□ -1.44
SPG11-211ENST00000558561 XKR5Q6UX68 686 aa6.07□□□□□ -1.44
SPG11-211ENST00000558561 DHX32Q7L7V1 743 aaKnown RBP6.07□□□□□ -1.44
SPG11-211ENST00000558561 KRT28Q7Z3Y7 464 aa6.07□□□□□ -1.44
SPG11-211ENST00000558561 GOLGA6L1Q8N7Z2 621 aa6.07□□□□□ -1.44
SPG11-211ENST00000558561 GALNT6Q8NCL4 622 aa6.07□□□□□ -1.44
SPG11-211ENST00000558561 CITED4Q96RK1 184 aa6.07□□□□□ -1.44
SPG11-211ENST00000558561 MDFIQ99750 246 aa6.07□□□□□ -1.44
SPG11-211ENST00000558561 CDK19Q9BWU1 502 aa6.07□□□□□ -1.44
SPG11-211ENST00000558561 RBCK1Q9BYM8 510 aa6.07□□□□□ -1.44
SPG11-211ENST00000558561 EFCC1Q9HA90 598 aa6.07□□□□□ -1.44
SPG11-211ENST00000558561 TLR7Q9NYK1 1049 aaKnown RBP6.07□□□□□ -1.44
SPG11-211ENST00000558561 GDF2Q9UK05 429 aaPredicted RBP6.07□□□□□ -1.44
SPG11-211ENST00000558561 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.07□□□□□ -1.44
SPG11-211ENST00000558561 MYOM2P54296 1465 aa6.07□□□□□ -1.44
SPG11-211ENST00000558561 LRP6O75581 1613 aa6.07□□□□□ -1.44
SPG11-211ENST00000558561 COL16A1Q07092 1604 aaPredicted RBP6.07□□□□□ -1.44
SPG11-211ENST00000558561 MED1Q15648 1581 aaPredicted RBP6.06□□□□□ -1.44
SPG11-211ENST00000558561 ZBTB42B2RXF5 422 aa6.06□□□□□ -1.44
SPG11-211ENST00000558561 OIP5O43482 229 aa6.06□□□□□ -1.44
SPG11-211ENST00000558561 IGHA2P01877 340 aa6.06□□□□□ -1.44
SPG11-211ENST00000558561 CYP2E1P05181 493 aaPredicted RBP6.06□□□□□ -1.44
SPG11-211ENST00000558561 EPXP11678 715 aa6.06□□□□□ -1.44
SPG11-211ENST00000558561 TTC39BQ5VTQ0 682 aaPredicted RBP6.06□□□□□ -1.44
SPG11-211ENST00000558561 SLCO4C1Q6ZQN7 724 aa6.06□□□□□ -1.44
SPG11-211ENST00000558561 TMC7Q7Z402 723 aa6.06□□□□□ -1.44
SPG11-211ENST00000558561 C1orf127Q8N9H9 656 aa6.06□□□□□ -1.44
SPG11-211ENST00000558561 EDARADDQ8WWZ3 215 aa6.06□□□□□ -1.44
SPG11-211ENST00000558561 FAM129BQ96TA1 746 aa6.06□□□□□ -1.44
SPG11-211ENST00000558561 UBE2OQ9C0C9 1292 aaKnown RBP6.06□□□□□ -1.44
SPG11-211ENST00000558561 NIF3L1Q9GZT8 377 aa6.06□□□□□ -1.44
SPG11-211ENST00000558561 DNAJB12Q9NXW2 375 aaKnown RBP6.06□□□□□ -1.44
SPG11-211ENST00000558561 ABI2Q9NYB9 513 aaPredicted RBP6.06□□□□□ -1.44
SPG11-211ENST00000558561 FOXD3Q9UJU5 478 aaPredicted RBP6.06□□□□□ -1.44
SPG11-211ENST00000558561 TECPR2O15040 1411 aa6.06□□□□□ -1.44
SPG11-211ENST00000558561 PTCH1Q13635 1447 aa6.06□□□□□ -1.44
SPG11-211ENST00000558561 PRAG1Q86YV5 1406 aa6.06□□□□□ -1.44
SPG11-211ENST00000558561 ELOA3CA0A087WX78 387 aaPredicted RBP6.05□□□□□ -1.44
SPG11-211ENST00000558561 ELOA3DA6NLF2 546 aaPredicted RBP6.05□□□□□ -1.44
SPG11-211ENST00000558561 ADARB2-AS1A8MUL3 147 aa6.05□□□□□ -1.44
SPG11-211ENST00000558561 SHISA8B8ZZ34 492 aa6.05□□□□□ -1.44
SPG11-211ENST00000558561 GPR182O15218 404 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms