RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 ANGEL2Q5VTE6 544 aaKnown RBP16.65■□□□□ 0.26
SHMT2-228ENST00000557302 CDC37L1Q7L3B6 337 aa16.65■□□□□ 0.26
SHMT2-228ENST00000557302 KRT26Q7Z3Y9 468 aa16.65■□□□□ 0.26
SHMT2-228ENST00000557302 ZNF512BQ96KM6 892 aaPredicted RBP16.65■□□□□ 0.26
SHMT2-228ENST00000557302 GLIS2Q9BZE0 524 aaPredicted RBP16.65■□□□□ 0.26
SHMT2-228ENST00000557302 PASKQ96RG2 1323 aa16.65■□□□□ 0.26
SHMT2-228ENST00000557302 MYH13Q9UKX3 1938 aa16.64■□□□□ 0.26
SHMT2-228ENST00000557302 SPDYE2BA6NHP3 402 aa16.64■□□□□ 0.25
SHMT2-228ENST00000557302 LDHBP07195 334 aaKnown RBP16.64■□□□□ 0.25
SHMT2-228ENST00000557302 SPDYE6P0CI01 402 aa16.64■□□□□ 0.25
SHMT2-228ENST00000557302 PRDX5P30044 214 aa16.64■□□□□ 0.25
SHMT2-228ENST00000557302 CRKP46108 304 aa16.64■□□□□ 0.25
SHMT2-228ENST00000557302 HDLBPQ00341 1268 aaKnown RBP16.64■□□□□ 0.25
SHMT2-228ENST00000557302 HDAC1Q13547 482 aaPredicted RBP16.64■□□□□ 0.25
SHMT2-228ENST00000557302 PI16Q6UXB8 463 aa16.64■□□□□ 0.25
SHMT2-228ENST00000557302 SULF1Q8IWU6 871 aa16.64■□□□□ 0.25
SHMT2-228ENST00000557302 TEKT1Q969V4 418 aa16.64■□□□□ 0.25
SHMT2-228ENST00000557302 PITPNM2Q9BZ72 1349 aa16.64■□□□□ 0.25
SHMT2-228ENST00000557302 TRAF5O00463 557 aa16.63■□□□□ 0.25
SHMT2-228ENST00000557302 MYO1BO43795 1136 aa16.63■□□□□ 0.25
SHMT2-228ENST00000557302 SPTY2D1Q68D10 685 aaPredicted RBP16.63■□□□□ 0.25
SHMT2-228ENST00000557302 USP48Q86UV5 1035 aa16.63■□□□□ 0.25
SHMT2-228ENST00000557302 ABCF2Q9UG63 623 aa16.63■□□□□ 0.25
SHMT2-228ENST00000557302 PCDHAC2Q9Y5I4 1007 aa16.63■□□□□ 0.25
SHMT2-228ENST00000557302 SMARCA5O60264 1052 aaPredicted RBP16.62■□□□□ 0.25
SHMT2-228ENST00000557302 HHIPL2Q6UWX4 724 aa16.62■□□□□ 0.25
SHMT2-228ENST00000557302 MRIQ9BWK5 157 aa16.62■□□□□ 0.25
SHMT2-228ENST00000557302 SNRKQ9NRH2 765 aa16.62■□□□□ 0.25
SHMT2-228ENST00000557302 ADM5C9JUS6 153 aa16.61■□□□□ 0.25
SHMT2-228ENST00000557302 HOXD11P31277 338 aaPredicted RBP16.61■□□□□ 0.25
SHMT2-228ENST00000557302 ERICH6Q7L0X2 663 aa16.61■□□□□ 0.25
SHMT2-228ENST00000557302 DZIP1Q86YF9 867 aaKnown RBP16.61■□□□□ 0.25
SHMT2-228ENST00000557302 APOBEC3FQ8IUX4 373 aaKnown RBP16.61■□□□□ 0.25
SHMT2-228ENST00000557302 PRMT6Q96LA8 375 aaPredicted RBP16.61■□□□□ 0.25
SHMT2-228ENST00000557302 RWDD1Q9H446 243 aaPredicted RBP16.61■□□□□ 0.25
SHMT2-228ENST00000557302 CLRN2A0PK11 232 aa16.6■□□□□ 0.25
SHMT2-228ENST00000557302 FMR1Q06787 632 aaKnown RBP eCLIP16.6■□□□□ 0.25
SHMT2-228ENST00000557302 DIXDC1Q155Q3 683 aa16.6■□□□□ 0.25
SHMT2-228ENST00000557302 TBC1D9Q6ZT07 1266 aa16.6■□□□□ 0.25
SHMT2-228ENST00000557302 GCC1Q96CN9 775 aa16.6■□□□□ 0.25
SHMT2-228ENST00000557302 ZDHHC15Q96MV8 337 aa16.6■□□□□ 0.25
SHMT2-228ENST00000557302 TMEM88BA6NKF7 163 aa16.59■□□□□ 0.25
SHMT2-228ENST00000557302 ZAP70P43403 619 aa16.59■□□□□ 0.25
SHMT2-228ENST00000557302 SPDYE2Q495Y8 402 aa16.59■□□□□ 0.25
SHMT2-228ENST00000557302 SLF2Q8IX21 1173 aa16.59■□□□□ 0.25
SHMT2-228ENST00000557302 DNAJC5GQ8N7S2 189 aa16.59■□□□□ 0.25
SHMT2-228ENST00000557302 VEZTQ9HBM0 779 aa16.59■□□□□ 0.25
SHMT2-228ENST00000557302 RAI14Q9P0K7 980 aa16.59■□□□□ 0.25
SHMT2-228ENST00000557302 LRP2BPQ9P2M1 347 aa16.59■□□□□ 0.25
SHMT2-228ENST00000557302 ZBTB47Q9UFB7 747 aaPredicted RBP16.59■□□□□ 0.25
SHMT2-228ENST00000557302 AOX1Q06278 1338 aa16.59■□□□□ 0.25
SHMT2-228ENST00000557302 CELF2O95319 508 aaKnown RBP16.58■□□□□ 0.24
SHMT2-228ENST00000557302 CYP2E1P05181 493 aaPredicted RBP16.58■□□□□ 0.24
SHMT2-228ENST00000557302 DLK2Q6UY11 383 aa16.58■□□□□ 0.24
SHMT2-228ENST00000557302 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.58■□□□□ 0.24
SHMT2-228ENST00000557302 TDRD3Q9H7E2 651 aaKnown RBP16.58■□□□□ 0.24
SHMT2-228ENST00000557302 ZNF408Q9H9D4 720 aa16.58■□□□□ 0.24
SHMT2-228ENST00000557302 CREBZFQ9NS37 354 aa16.58■□□□□ 0.24
SHMT2-228ENST00000557302 ZNF70Q9UC06 446 aaPredicted RBP16.58■□□□□ 0.24
SHMT2-228ENST00000557302 SCAF8Q9UPN6 1271 aaKnown RBP16.58■□□□□ 0.24
SHMT2-228ENST00000557302 DAGLAQ9Y4D2 1042 aa16.58■□□□□ 0.24
SHMT2-228ENST00000557302 GSTO1P78417 241 aa16.57■□□□□ 0.24
SHMT2-228ENST00000557302 MECOMQ03112 1051 aa16.57■□□□□ 0.24
SHMT2-228ENST00000557302 APOBEC3HQ6NTF7 200 aaKnown RBP16.57■□□□□ 0.24
SHMT2-228ENST00000557302 CDCA5Q96FF9 252 aa16.57■□□□□ 0.24
SHMT2-228ENST00000557302 GPATCH3Q96I76 525 aa16.57■□□□□ 0.24
SHMT2-228ENST00000557302 TMOD2Q9NZR1 351 aa16.57■□□□□ 0.24
SHMT2-228ENST00000557302 GAKO14976 1311 aa16.56■□□□□ 0.24
SHMT2-228ENST00000557302 IGSF3O75054 1194 aa16.56■□□□□ 0.24
SHMT2-228ENST00000557302 CENPBP07199 599 aaPredicted RBP16.56■□□□□ 0.24
SHMT2-228ENST00000557302 ATP5JP18859 108 aa16.56■□□□□ 0.24
SHMT2-228ENST00000557302 HTRA3P83110 453 aa16.56■□□□□ 0.24
SHMT2-228ENST00000557302 TNFAIP1Q13829 316 aa16.56■□□□□ 0.24
SHMT2-228ENST00000557302 ANKRD45Q5TZF3 282 aa16.56■□□□□ 0.24
SHMT2-228ENST00000557302 CST9Q5W186 159 aa16.56■□□□□ 0.24
SHMT2-228ENST00000557302 NSUN4Q96CB9 384 aaKnown RBP16.56■□□□□ 0.24
SHMT2-228ENST00000557302 DNAJC2Q99543 621 aaKnown RBP16.56■□□□□ 0.24
SHMT2-228ENST00000557302 DEFB129Q9H1M3 183 aa16.56■□□□□ 0.24
SHMT2-228ENST00000557302 PIH1D3Q9NQM4 214 aaKnown RBP16.56■□□□□ 0.24
SHMT2-228ENST00000557302 ECHDC1Q9NTX5 307 aa16.56■□□□□ 0.24
SHMT2-228ENST00000557302 NDUFB9Q9Y6M9 179 aa16.56■□□□□ 0.24
SHMT2-228ENST00000557302 POLR2AP24928 1970 aaKnown RBP16.55■□□□□ 0.24
SHMT2-228ENST00000557302 AKAP11Q9UKA4 1901 aa16.55■□□□□ 0.24
SHMT2-228ENST00000557302 MROH7-TTC4A0A0A0MT08 1334 aa16.55■□□□□ 0.24
SHMT2-228ENST00000557302 IGHDP01880 384 aa16.55■□□□□ 0.24
SHMT2-228ENST00000557302 LDHCP07864 332 aa16.55■□□□□ 0.24
SHMT2-228ENST00000557302 TTF1Q15361 905 aaPredicted RBP16.55■□□□□ 0.24
SHMT2-228ENST00000557302 FAM163AQ96GL9 167 aaPredicted RBP16.55■□□□□ 0.24
SHMT2-228ENST00000557302 PPP2R3BQ9Y5P8 575 aa16.55■□□□□ 0.24
SHMT2-228ENST00000557302 TCP10L2B9ZVM9 353 aa16.54■□□□□ 0.24
SHMT2-228ENST00000557302 IDH1O75874 414 aaKnown RBP16.54■□□□□ 0.24
SHMT2-228ENST00000557302 PRAMEF18Q5VWM3 479 aa16.54■□□□□ 0.24
SHMT2-228ENST00000557302 NAA16Q6N069 864 aaPredicted RBP16.54■□□□□ 0.24
SHMT2-228ENST00000557302 CDC42EP5Q6NZY7 148 aa16.54■□□□□ 0.24
SHMT2-228ENST00000557302 SMC5Q8IY18 1101 aa16.54■□□□□ 0.24
SHMT2-228ENST00000557302 ZNF384Q8TF68 577 aa16.54■□□□□ 0.24
SHMT2-228ENST00000557302 BOLA2Q9H3K6 86 aa16.54■□□□□ 0.24
SHMT2-228ENST00000557302 ABT1Q9ULW3 272 aaKnown RBP16.54■□□□□ 0.24
SHMT2-228ENST00000557302 ECM29Q5VYK3 1845 aa16.54■□□□□ 0.24
SHMT2-228ENST00000557302 GOLIM4O00461 696 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 279.6 ms