RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	MAP2K1	Q02750	393 aa	Predicted RBP	5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	IFIT5	Q13325	482 aa	Known RBP	5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	BICDL1	Q6ZP65	573 aa		5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	SLC4A4	Q9Y6R1	1079 aa		5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	AK9	Q5TCS8	1911 aa		5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	KCNQ3	O43525	872 aa		5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	PFKFB1	P16118	471 aa		5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	CLCN6	P51797	869 aa		5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	CUL4A	Q13619	759 aa		5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	HLTF	Q14527	1009 aa	Known RBP eCLIP	5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	RTN1	Q16799	776 aa		5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	CCDC144B	Q3MJ40	725 aa		5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	BRAP	Q7Z569	592 aa		5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	CATIP	Q7Z7H3	387 aa		5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	ZNF594	Q96JF6	807 aa	Predicted RBP	5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	BLZF1	Q9H2G9	400 aa		5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	PDE11A	Q9HCR9	933 aa		5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	CABP5	Q9NP86	173 aa		5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	EXOC1	Q9NV70	894 aa		5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	SHPRH	Q149N8	1683 aa		5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	ZEB2	O60315	1214 aa		5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	SLC5A1	P13866	664 aa		5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	ZNF174	Q15697	407 aa		5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	ZSCAN26	Q16670	478 aa		5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	ZNF589	Q86UQ0	364 aa	Predicted RBP	5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	KCNH5	Q8NCM2	988 aa		5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	PHKB	Q93100	1093 aa		5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	ABCF2	Q9UG63	623 aa		5.67	□□□□□ -1.5
SYNE2-223	ENST00000557005	PPRC1	Q5VV67	1664 aa	Known RBP	5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	KDR	P35968	1356 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	ANKRD18B	A2A2Z9	1011 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005		E7EWF7	191 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	WTAP	Q15007	396 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	DYDC1	Q8WWB3	177 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	TMX4	Q9H1E5	349 aa	Predicted RBP	5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	MYO1B	O43795	1136 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	SYCP1	Q15431	976 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	LMBR1L	Q6UX01	489 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	CYP26C1	Q6V0L0	522 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	ANKRD13D	Q6ZTN6	518 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	MAGEB6	Q8N7X4	407 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	TMEM87A	Q8NBN3	555 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	PDLIM2	Q96JY6	352 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	HINFP	Q9BQA5	517 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	SELENOS	Q9BQE4	189 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	VPS16	Q9H269	839 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	MMRN2	Q9H8L6	949 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	LUC7L	Q9NQ29	371 aa	Known RBP	5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	FBXO3	Q9UK99	471 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	OPA1	O60313	960 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	WDHD1	O75717	1129 aa	Predicted RBP	5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	TRIM21	P19474	475 aa	Known RBP	5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	GBP2	P32456	591 aa	Predicted RBP	5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	IK	Q13123	557 aa	Predicted RBP	5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	TTF1	Q15361	905 aa	Predicted RBP	5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	CLIC6	Q96NY7	704 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	USP28	Q96RU2	1077 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	LLPH	Q9BRT6	129 aa	Known RBP	5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	SPTLC3	Q9NUV7	552 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	RERE	Q9P2R6	1566 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	SBNO1	A3KN83	1393 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	ABCC3	O15438	1527 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	FAM170A	A1A519	330 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	POLR2D	O15514	142 aa	Known RBP	5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	CEBPA	P49715	358 aa	Predicted RBP	5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	IRX5	P78411	483 aa	Predicted RBP	5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	KRI1	Q8N9T8	703 aa	Known RBP	5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	CTCFL	Q8NI51	663 aa	Predicted RBP	5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	JAKMIP2	Q96AA8	810 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	DBNDD2	Q9BQY9	259 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	KCNH3	Q9ULD8	1083 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	PCDHA7	Q9UN72	937 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	SMIM23	A6NLE4	172 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	MAP3K12	Q12852	859 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	KMT5B	Q4FZB7	885 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	TOGARAM2	Q6ZUX3	1019 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	CCDC91	Q7Z6B0	441 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	GPR161	Q8N6U8	529 aa	Known RBP	5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	EHBP1	Q8NDI1	1231 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	UBA5	Q9GZZ9	404 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	RMND1	Q9NWS8	449 aa		5.66	□□□□□ -1.5
SYNE2-223	ENST00000557005	TMCO5B	A8MYB1	307 aa		5.65	□□□□□ -1.5
SYNE2-223	ENST00000557005	IDE	P14735	1019 aa		5.65	□□□□□ -1.5
SYNE2-223	ENST00000557005	IGHMBP2	P38935	993 aa	Known RBP	5.65	□□□□□ -1.5
SYNE2-223	ENST00000557005	PAFAH1B1	P43034	410 aa		5.65	□□□□□ -1.5
SYNE2-223	ENST00000557005	POSTN	Q15063	836 aa		5.65	□□□□□ -1.5
SYNE2-223	ENST00000557005	FAM114A1	Q8IWE2	563 aa		5.65	□□□□□ -1.5
SYNE2-223	ENST00000557005	SERTAD1	Q9UHV2	236 aa		5.65	□□□□□ -1.5
SYNE2-223	ENST00000557005	KCNJ14	Q9UNX9	436 aa		5.65	□□□□□ -1.5
SYNE2-223	ENST00000557005	SETBP1	Q9Y6X0	1596 aa		5.65	□□□□□ -1.5
SYNE2-223	ENST00000557005	TMEM110-MUSTN1	A8MSY1	372 aa		5.65	□□□□□ -1.5
SYNE2-223	ENST00000557005		B4E1Z4	1266 aa		5.65	□□□□□ -1.5
SYNE2-223	ENST00000557005	CCDC121	Q6ZUS5	278 aa		5.65	□□□□□ -1.5
SYNE2-223	ENST00000557005	CEP57	Q86XR8	500 aa		5.65	□□□□□ -1.5
SYNE2-223	ENST00000557005	CMTR1	Q8N1G2	835 aa	Known RBP	5.65	□□□□□ -1.5
SYNE2-223	ENST00000557005	MIGA1	Q8NAN2	632 aa		5.65	□□□□□ -1.5
SYNE2-223	ENST00000557005	CCDC43	Q96MW1	224 aa	Known RBP	5.65	□□□□□ -1.5
SYNE2-223	ENST00000557005	TAB2	Q9NYJ8	693 aa		5.65	□□□□□ -1.5
SYNE2-223	ENST00000557005	MAPK8IP1	Q9UQF2	711 aa		5.65	□□□□□ -1.5
SYNE2-223	ENST00000557005	ATP7B	P35670	1465 aa		5.65	□□□□□ -1.5

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