RNA–Protein interactions for RNA: ENST00000555854.1

VIPAS39-207, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5

Gene VIPAS39, Length 444 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-207ENST00000555854 SAGE1Q9NXZ1 904 aa11.65□□□□□ -0.54
VIPAS39-207ENST00000555854 SERPINA10Q9UK55 444 aa11.65□□□□□ -0.54
VIPAS39-207ENST00000555854 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.65□□□□□ -0.54
VIPAS39-207ENST00000555854 CENPFP49454 3210 aa11.65□□□□□ -0.54
VIPAS39-207ENST00000555854 CRKP46108 304 aa11.64□□□□□ -0.55
VIPAS39-207ENST00000555854 DIEXFQ68CQ4 756 aaKnown RBP11.64□□□□□ -0.55
VIPAS39-207ENST00000555854 ARHGAP45Q92619 1136 aa11.64□□□□□ -0.55
VIPAS39-207ENST00000555854 ABHD8Q96I13 439 aa11.64□□□□□ -0.55
VIPAS39-207ENST00000555854 TEPSINQ96N21 525 aa11.64□□□□□ -0.55
VIPAS39-207ENST00000555854 VEZTQ9HBM0 779 aa11.64□□□□□ -0.55
VIPAS39-207ENST00000555854 ZNF70Q9UC06 446 aaPredicted RBP11.64□□□□□ -0.55
VIPAS39-207ENST00000555854 PPP2R3BQ9Y5P8 575 aa11.64□□□□□ -0.55
VIPAS39-207ENST00000555854 BRCA2P51587 3418 aa11.64□□□□□ -0.55
VIPAS39-207ENST00000555854 TRPA1O75762 1119 aa11.63□□□□□ -0.55
VIPAS39-207ENST00000555854 CIAO1O76071 339 aa11.63□□□□□ -0.55
VIPAS39-207ENST00000555854 ADORA1P30542 326 aa11.63□□□□□ -0.55
VIPAS39-207ENST00000555854 MKRN3Q13064 507 aaKnown RBP11.63□□□□□ -0.55
VIPAS39-207ENST00000555854 MTX1Q13505 466 aa11.63□□□□□ -0.55
VIPAS39-207ENST00000555854 TTLL12Q14166 644 aaPredicted RBP11.63□□□□□ -0.55
VIPAS39-207ENST00000555854 RASA3Q14644 834 aa11.63□□□□□ -0.55
VIPAS39-207ENST00000555854 NBPF12Q5TAG4 269 aaPredicted RBP11.63□□□□□ -0.55
VIPAS39-207ENST00000555854 DZIP1LQ8IYY4 767 aaKnown RBP11.63□□□□□ -0.55
VIPAS39-207ENST00000555854 CLMNQ96JQ2 1002 aa11.63□□□□□ -0.55
VIPAS39-207ENST00000555854 TDRD3Q9H7E2 651 aaKnown RBP11.63□□□□□ -0.55
VIPAS39-207ENST00000555854 COPRSQ9NQ92 184 aa11.63□□□□□ -0.55
VIPAS39-207ENST00000555854 ANGEL1Q9UNK9 670 aaKnown RBP11.63□□□□□ -0.55
VIPAS39-207ENST00000555854 IFIT1P09914 478 aaKnown RBP11.62□□□□□ -0.55
VIPAS39-207ENST00000555854 SLC5A1P13866 664 aa11.62□□□□□ -0.55
VIPAS39-207ENST00000555854 NF2P35240 595 aa11.62□□□□□ -0.55
VIPAS39-207ENST00000555854 GJA5P36382 358 aa11.62□□□□□ -0.55
VIPAS39-207ENST00000555854 CACNB3P54284 484 aa11.62□□□□□ -0.55
VIPAS39-207ENST00000555854 HNRNPUQ00839 825 aaKnown RBP eCLIP11.62□□□□□ -0.55
VIPAS39-207ENST00000555854 ATP2B3Q16720 1220 aa11.62□□□□□ -0.55
VIPAS39-207ENST00000555854 CAVIN4Q5BKX8 364 aa11.62□□□□□ -0.55
VIPAS39-207ENST00000555854 ATF7IPQ6VMQ6 1270 aa11.62□□□□□ -0.55
VIPAS39-207ENST00000555854 LPIN2Q92539 896 aa11.62□□□□□ -0.55
VIPAS39-207ENST00000555854 MCOLN1Q9GZU1 580 aa11.62□□□□□ -0.55
VIPAS39-207ENST00000555854 FBXO3Q9UK99 471 aa11.62□□□□□ -0.55
VIPAS39-207ENST00000555854 PHKA1P46020 1223 aa11.61□□□□□ -0.55
VIPAS39-207ENST00000555854 RBM5P52756 815 aaKnown RBP eCLIP11.61□□□□□ -0.55
VIPAS39-207ENST00000555854 SPRYD7Q5W111 196 aa11.61□□□□□ -0.55
VIPAS39-207ENST00000555854 APOBEC3HQ6NTF7 200 aaKnown RBP11.61□□□□□ -0.55
VIPAS39-207ENST00000555854 ARMC9Q7Z3E5 817 aa11.61□□□□□ -0.55
VIPAS39-207ENST00000555854 VPS37DQ86XT2 251 aa11.61□□□□□ -0.55
VIPAS39-207ENST00000555854 TBC1D22AQ8WUA7 517 aa11.61□□□□□ -0.55
VIPAS39-207ENST00000555854 CLUAP1Q96AJ1 413 aa11.61□□□□□ -0.55
VIPAS39-207ENST00000555854 TMEM39BQ9GZU3 492 aa11.61□□□□□ -0.55
VIPAS39-207ENST00000555854 RFX7Q2KHR2 1363 aa11.6□□□□□ -0.55
VIPAS39-207ENST00000555854 PNMA6EA0A0J9YXQ4 647 aa11.6□□□□□ -0.55
VIPAS39-207ENST00000555854 TCP10L2B9ZVM9 353 aa11.6□□□□□ -0.55
VIPAS39-207ENST00000555854 MYO1BO43795 1136 aa11.6□□□□□ -0.55
VIPAS39-207ENST00000555854 USP2O75604 605 aaPredicted RBP11.6□□□□□ -0.55
VIPAS39-207ENST00000555854 PRDX5P30044 214 aa11.6□□□□□ -0.55
VIPAS39-207ENST00000555854 IL15P40933 162 aaPredicted RBP11.6□□□□□ -0.55
VIPAS39-207ENST00000555854 HDLBPQ00341 1268 aaKnown RBP11.6□□□□□ -0.55
VIPAS39-207ENST00000555854 REM2Q8IYK8 340 aaPredicted RBP11.6□□□□□ -0.55
VIPAS39-207ENST00000555854 TMEM57Q8N5G2 664 aa11.6□□□□□ -0.55
VIPAS39-207ENST00000555854 FRAT1Q92837 279 aaPredicted RBP11.6□□□□□ -0.55
VIPAS39-207ENST00000555854 WNK4Q96J92 1243 aa11.6□□□□□ -0.55
VIPAS39-207ENST00000555854 ZDHHC15Q96MV8 337 aa11.6□□□□□ -0.55
VIPAS39-207ENST00000555854 R3HDMLQ9H3Y0 253 aa11.6□□□□□ -0.55
VIPAS39-207ENST00000555854 MKI67P46013 3256 aaKnown RBP11.6□□□□□ -0.55
VIPAS39-207ENST00000555854 ZBED9Q6R2W3 1325 aa11.6□□□□□ -0.55
VIPAS39-207ENST00000555854 RPAP1Q9BWH6 1393 aaPredicted RBP11.59□□□□□ -0.55
VIPAS39-207ENST00000555854 SRGAP3O43295 1099 aa11.59□□□□□ -0.55
VIPAS39-207ENST00000555854 GNAI3P08754 354 aa11.59□□□□□ -0.55
VIPAS39-207ENST00000555854 RLBP1P12271 317 aa11.59□□□□□ -0.55
VIPAS39-207ENST00000555854 TM4SF4P48230 202 aa11.59□□□□□ -0.55
VIPAS39-207ENST00000555854 DIXDC1Q155Q3 683 aa11.59□□□□□ -0.55
VIPAS39-207ENST00000555854 TEKT1Q969V4 418 aa11.59□□□□□ -0.55
VIPAS39-207ENST00000555854 CEP126Q9P2H0 1117 aa11.59□□□□□ -0.55
VIPAS39-207ENST00000555854 TNRC18O15417 2968 aaPredicted RBP11.58□□□□□ -0.55
VIPAS39-207ENST00000555854 IGF2BP3O00425 579 aaKnown RBP eCLIP11.58□□□□□ -0.56
VIPAS39-207ENST00000555854 FRAT2O75474 233 aaPredicted RBP11.58□□□□□ -0.56
VIPAS39-207ENST00000555854 TFCP2Q12800 502 aa11.58□□□□□ -0.56
VIPAS39-207ENST00000555854 DGKZQ13574 1117 aa11.58□□□□□ -0.56
VIPAS39-207ENST00000555854 TNFAIP1Q13829 316 aa11.58□□□□□ -0.56
VIPAS39-207ENST00000555854 RASGRF1Q13972 1273 aa11.58□□□□□ -0.56
VIPAS39-207ENST00000555854 SUGT1Q9Y2Z0 365 aa11.58□□□□□ -0.56
VIPAS39-207ENST00000555854 DAGLAQ9Y4D2 1042 aa11.58□□□□□ -0.56
VIPAS39-207ENST00000555854 SALL1Q9NSC2 1324 aa11.58□□□□□ -0.56
VIPAS39-207ENST00000555854 PPP1R12BO60237 982 aaPredicted RBP11.57□□□□□ -0.56
VIPAS39-207ENST00000555854 TBC1D8O95759 1140 aa11.57□□□□□ -0.56
VIPAS39-207ENST00000555854 NFIAQ12857 509 aa11.57□□□□□ -0.56
VIPAS39-207ENST00000555854 SUPT20HL1Q3ZLR7 823 aa11.57□□□□□ -0.56
VIPAS39-207ENST00000555854 ZKSCAN2Q63HK3 967 aa11.57□□□□□ -0.56
VIPAS39-207ENST00000555854 CCDC102BQ68D86 513 aa11.57□□□□□ -0.56
VIPAS39-207ENST00000555854 HHIPL2Q6UWX4 724 aa11.57□□□□□ -0.56
VIPAS39-207ENST00000555854 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.57□□□□□ -0.56
VIPAS39-207ENST00000555854 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.57□□□□□ -0.56
VIPAS39-207ENST00000555854 WDR66Q8TBY9 1149 aa11.57□□□□□ -0.56
VIPAS39-207ENST00000555854 MRIQ9BWK5 157 aa11.57□□□□□ -0.56
VIPAS39-207ENST00000555854 CFHR5Q9BXR6 569 aa11.57□□□□□ -0.56
VIPAS39-207ENST00000555854 MAST3O60307 1309 aa11.57□□□□□ -0.56
VIPAS39-207ENST00000555854 ATRNL1Q5VV63 1379 aa11.56□□□□□ -0.56
VIPAS39-207ENST00000555854 A0A1B0GUL7 405 aa11.56□□□□□ -0.56
VIPAS39-207ENST00000555854 IPO8O15397 1037 aaKnown RBP11.56□□□□□ -0.56
VIPAS39-207ENST00000555854 GNAI2P04899 355 aa11.56□□□□□ -0.56
VIPAS39-207ENST00000555854 ZBTB48P10074 688 aaPredicted RBP11.56□□□□□ -0.56
VIPAS39-207ENST00000555854 IREB2P48200 963 aaKnown RBP11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms