RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 H7C1D1 291 aa14.85□□□□□ -0.03
SHMT2-209ENST00000553949 IGSF3O75054 1194 aa14.85□□□□□ -0.03
SHMT2-209ENST00000553949 GSPT1P15170 499 aaKnown RBP14.85□□□□□ -0.03
SHMT2-209ENST00000553949 MMP14P50281 582 aa14.85□□□□□ -0.03
SHMT2-209ENST00000553949 MECOMQ03112 1051 aa14.85□□□□□ -0.03
SHMT2-209ENST00000553949 MAP3K12Q12852 859 aa14.85□□□□□ -0.03
SHMT2-209ENST00000553949 ZNF526Q8TF50 670 aaPredicted RBP14.85□□□□□ -0.03
SHMT2-209ENST00000553949 EVI5LQ96CN4 794 aa14.85□□□□□ -0.03
SHMT2-209ENST00000553949 MAST3O60307 1309 aa14.85□□□□□ -0.03
SHMT2-209ENST00000553949 IQCA1LA6NCM1 817 aa14.84□□□□□ -0.03
SHMT2-209ENST00000553949 TRIM6-TRIM34B2RNG4 842 aa14.84□□□□□ -0.03
SHMT2-209ENST00000553949 EPS15P42566 896 aa14.84□□□□□ -0.03
SHMT2-209ENST00000553949 CNTROBQ8N137 903 aa14.84□□□□□ -0.03
SHMT2-209ENST00000553949 KBTBD3Q8NAB2 608 aa14.84□□□□□ -0.03
SHMT2-209ENST00000553949 NSUN4Q96CB9 384 aaKnown RBP14.84□□□□□ -0.03
SHMT2-209ENST00000553949 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.84□□□□□ -0.031e-6■■□□□ 11.9
SHMT2-209ENST00000553949 HACL1Q9UJ83 578 aa14.84□□□□□ -0.03
SHMT2-209ENST00000553949 POTECB2RU33 542 aa14.83□□□□□ -0.04
SHMT2-209ENST00000553949 CRKP46108 304 aa14.83□□□□□ -0.04
SHMT2-209ENST00000553949 GSTO1P78417 241 aa14.83□□□□□ -0.04
SHMT2-209ENST00000553949 HDLBPQ00341 1268 aaKnown RBP14.83□□□□□ -0.04
SHMT2-209ENST00000553949 DIXDC1Q155Q3 683 aa14.83□□□□□ -0.04
SHMT2-209ENST00000553949 NAA16Q6N069 864 aaPredicted RBP14.83□□□□□ -0.04
SHMT2-209ENST00000553949 MAGEB6Q8N7X4 407 aa14.83□□□□□ -0.04
SHMT2-209ENST00000553949 ZNF384Q8TF68 577 aa14.83□□□□□ -0.04
SHMT2-209ENST00000553949 TEKT1Q969V4 418 aa14.83□□□□□ -0.04
SHMT2-209ENST00000553949 RILPL2Q969X0 211 aa14.83□□□□□ -0.04
SHMT2-209ENST00000553949 FSD1Q9BTV5 496 aa14.83□□□□□ -0.04
SHMT2-209ENST00000553949 MRIQ9BWK5 157 aa14.83□□□□□ -0.04
SHMT2-209ENST00000553949 MYOZ2Q9NPC6 264 aa14.83□□□□□ -0.04
SHMT2-209ENST00000553949 SERPINA10Q9UK55 444 aa14.83□□□□□ -0.04
SHMT2-209ENST00000553949 MYH13Q9UKX3 1938 aa14.83□□□□□ -0.04
SHMT2-209ENST00000553949 PDE6AP16499 860 aa14.82□□□□□ -0.04
SHMT2-209ENST00000553949 YY1P25490 414 aa14.82□□□□□ -0.04
SHMT2-209ENST00000553949 CFAP100Q494V2 611 aa14.82□□□□□ -0.04
SHMT2-209ENST00000553949 SLC9C2Q5TAH2 1124 aa14.82□□□□□ -0.04
SHMT2-209ENST00000553949 HHIPL2Q6UWX4 724 aa14.82□□□□□ -0.04
SHMT2-209ENST00000553949 SAMD7Q7Z3H4 446 aa14.82□□□□□ -0.04
SHMT2-209ENST00000553949 SLF2Q8IX21 1173 aa14.82□□□□□ -0.04
SHMT2-209ENST00000553949 RRAGCQ9HB90 399 aa14.82□□□□□ -0.04
SHMT2-209ENST00000553949 ADARB2Q9NS39 739 aaKnown RBP14.82□□□□□ -0.04
SHMT2-209ENST00000553949 WDR90Q96KV7 1748 aa14.81□□□□□ -0.04
SHMT2-209ENST00000553949 EGFRP00533 1210 aa14.81□□□□□ -0.04
SHMT2-209ENST00000553949 VEGFAP15692 232 aaPredicted RBP14.81□□□□□ -0.04
SHMT2-209ENST00000553949 SDSP20132 328 aa14.81□□□□□ -0.04
SHMT2-209ENST00000553949 EPHX2P34913 555 aa14.81□□□□□ -0.04
SHMT2-209ENST00000553949 ADD2P35612 726 aa14.81□□□□□ -0.04
SHMT2-209ENST00000553949 RBM5P52756 815 aaKnown RBP eCLIP14.81□□□□□ -0.04
SHMT2-209ENST00000553949 DLGAP5Q15398 846 aa14.81□□□□□ -0.04
SHMT2-209ENST00000553949 KIF4BQ2VIQ3 1234 aa14.81□□□□□ -0.04
SHMT2-209ENST00000553949 TBC1D10BQ4KMP7 808 aaPredicted RBP14.81□□□□□ -0.04
SHMT2-209ENST00000553949 RBM26Q5T8P6 1007 aaKnown RBP14.81□□□□□ -0.04
SHMT2-209ENST00000553949 ZSCAN25Q6NSZ9 544 aa14.81□□□□□ -0.04
SHMT2-209ENST00000553949 TMED8Q6PL24 325 aaPredicted RBP14.81□□□□□ -0.04
SHMT2-209ENST00000553949 MTMR14Q8NCE2 650 aa14.81□□□□□ -0.04
SHMT2-209ENST00000553949 TRPM4Q8TD43 1214 aa14.81□□□□□ -0.04
SHMT2-209ENST00000553949 FAM163AQ96GL9 167 aaPredicted RBP14.81□□□□□ -0.04
SHMT2-209ENST00000553949 ZDHHC15Q96MV8 337 aa14.81□□□□□ -0.04
SHMT2-209ENST00000553949 TAF1DQ9H5J8 278 aaPredicted RBP14.81□□□□□ -0.04
SHMT2-209ENST00000553949 NMRK2Q9NPI5 230 aa14.81□□□□□ -0.04
SHMT2-209ENST00000553949 DAGLAQ9Y4D2 1042 aa14.81□□□□□ -0.04
SHMT2-209ENST00000553949 PCDHAC2Q9Y5I4 1007 aa14.81□□□□□ -0.04
SHMT2-209ENST00000553949 GAKO14976 1311 aa14.81□□□□□ -0.04
SHMT2-209ENST00000553949 TCRBV5S4A2TA0A5A2 114 aa14.8□□□□□ -0.04
SHMT2-209ENST00000553949 SPDYE2BA6NHP3 402 aa14.8□□□□□ -0.04
SHMT2-209ENST00000553949 RNF113AO15541 343 aaKnown RBP14.8□□□□□ -0.04
SHMT2-209ENST00000553949 CHGBP05060 677 aa14.8□□□□□ -0.04
SHMT2-209ENST00000553949 LDHCP07864 332 aa14.8□□□□□ -0.04
SHMT2-209ENST00000553949 SPDYE6P0CI01 402 aa14.8□□□□□ -0.04
SHMT2-209ENST00000553949 CYP7A1P22680 504 aa14.8□□□□□ -0.04
SHMT2-209ENST00000553949 UBE3CQ15386 1083 aa14.8□□□□□ -0.04
SHMT2-209ENST00000553949 LRRFIP1Q32MZ4 808 aaKnown RBP14.8□□□□□ -0.04
SHMT2-209ENST00000553949 BMP2KLQ5H9B9 411 aa14.8□□□□□ -0.04
SHMT2-209ENST00000553949 ADGRA1Q86SQ6 560 aa14.8□□□□□ -0.04
SHMT2-209ENST00000553949 ZBED3Q96IU2 234 aaPredicted RBP14.8□□□□□ -0.04
SHMT2-209ENST00000553949 GPBP1L1Q9HC44 474 aaPredicted RBP14.8□□□□□ -0.04
SHMT2-209ENST00000553949 MROH7-TTC4A0A0A0MT08 1334 aa14.8□□□□□ -0.04
SHMT2-209ENST00000553949 ZNF532Q9HCE3 1301 aa14.8□□□□□ -0.04
SHMT2-209ENST00000553949 ZFYP08048 801 aaPredicted RBP14.79□□□□□ -0.04
SHMT2-209ENST00000553949 SLFNL1Q499Z3 407 aa14.79□□□□□ -0.04
SHMT2-209ENST00000553949 APOBEC3HQ6NTF7 200 aaKnown RBP14.79□□□□□ -0.04
SHMT2-209ENST00000553949 USP50Q70EL3 339 aaPredicted RBP14.79□□□□□ -0.04
SHMT2-209ENST00000553949 TICAM2Q86XR7 235 aa14.79□□□□□ -0.04
SHMT2-209ENST00000553949 PRMT6Q96LA8 375 aaPredicted RBP14.79□□□□□ -0.04
SHMT2-209ENST00000553949 RFX7Q2KHR2 1363 aa14.78□□□□□ -0.04
SHMT2-209ENST00000553949 GPR75-ASB3A0A0A6YYF3 556 aa14.78□□□□□ -0.04
SHMT2-209ENST00000553949 WNT10BO00744 389 aa14.78□□□□□ -0.04
SHMT2-209ENST00000553949 BTDP43251 543 aa14.78□□□□□ -0.04
SHMT2-209ENST00000553949 HIRAP54198 1017 aaPredicted RBP14.78□□□□□ -0.04
SHMT2-209ENST00000553949 NBPF9Q3BBW0 867 aa14.78□□□□□ -0.04
SHMT2-209ENST00000553949 PNMA8AQ86V59 439 aaPredicted RBP14.78□□□□□ -0.04
SHMT2-209ENST00000553949 DOCK2Q92608 1830 aa14.78□□□□□ -0.04
SHMT2-209ENST00000553949 BAG3O95817 575 aa14.77□□□□□ -0.05
SHMT2-209ENST00000553949 PPP4CP60510 307 aa14.77□□□□□ -0.05
SHMT2-209ENST00000553949 EAPPQ56P03 285 aaPredicted RBP14.77□□□□□ -0.05
SHMT2-209ENST00000553949 MIGA1Q8NAN2 632 aa14.77□□□□□ -0.05
SHMT2-209ENST00000553949 APPBP2Q92624 585 aa14.77□□□□□ -0.05
SHMT2-209ENST00000553949 NOL10Q9BSC4 688 aaKnown RBP14.77□□□□□ -0.05
SHMT2-209ENST00000553949 AATFQ9NY61 560 aaKnown RBP eCLIP14.77□□□□□ -0.05
SHMT2-209ENST00000553949 MAST2Q6P0Q8 1798 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms