RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 DZIP1LQ8IYY4 767 aaKnown RBP11.54□□□□□ -0.56
SYNE2-209ENST00000553308 FAM43AQ8N2R8 423 aa11.54□□□□□ -0.56
SYNE2-209ENST00000553308 TDRD7Q8NHU6 1098 aaKnown RBP11.54□□□□□ -0.56
SYNE2-209ENST00000553308 TMEM39BQ9GZU3 492 aa11.54□□□□□ -0.56
SYNE2-209ENST00000553308 SERPINA10Q9UK55 444 aa11.54□□□□□ -0.56
SYNE2-209ENST00000553308 KIAA0100Q14667 2235 aaKnown RBP11.54□□□□□ -0.56
SYNE2-209ENST00000553308 GRM8O00222 908 aa11.53□□□□□ -0.56
SYNE2-209ENST00000553308 MYCP01106 439 aaPredicted RBP11.53□□□□□ -0.56
SYNE2-209ENST00000553308 FXR1P51114 621 aaKnown RBP eCLIP11.53□□□□□ -0.56
SYNE2-209ENST00000553308 GRIK5Q16478 980 aa11.53□□□□□ -0.56
SYNE2-209ENST00000553308 SLC9C1Q4G0N8 1177 aa11.53□□□□□ -0.56
SYNE2-209ENST00000553308 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.53□□□□□ -0.56
SYNE2-209ENST00000553308 OTUD5Q96G74 571 aa11.53□□□□□ -0.56
SYNE2-209ENST00000553308 TMEM106CQ9BVX2 250 aa11.53□□□□□ -0.56
SYNE2-209ENST00000553308 ZFYVE28Q9HCC9 887 aa11.53□□□□□ -0.56
SYNE2-209ENST00000553308 HIBADHP31937 336 aaKnown RBP11.52□□□□□ -0.57
SYNE2-209ENST00000553308 CRKP46108 304 aa11.52□□□□□ -0.57
SYNE2-209ENST00000553308 GTF2A2P52657 109 aa11.52□□□□□ -0.57
SYNE2-209ENST00000553308 CACNB3P54284 484 aa11.52□□□□□ -0.57
SYNE2-209ENST00000553308 MAP3K9P80192 1104 aa11.52□□□□□ -0.57
SYNE2-209ENST00000553308 EXOSC9Q06265 439 aaKnown RBP11.52□□□□□ -0.57
SYNE2-209ENST00000553308 UBE4AQ14139 1066 aa11.52□□□□□ -0.57
SYNE2-209ENST00000553308 FAM84BQ96KN1 310 aaPredicted RBP11.52□□□□□ -0.57
SYNE2-209ENST00000553308 PUS3Q9BZE2 481 aaKnown RBP11.52□□□□□ -0.57
SYNE2-209ENST00000553308 ARHGAP39Q9C0H5 1083 aa11.52□□□□□ -0.57
SYNE2-209ENST00000553308 IQSEC3Q9UPP2 1182 aaPredicted RBP11.52□□□□□ -0.57
SYNE2-209ENST00000553308 CSADQ9Y600 493 aa11.52□□□□□ -0.57
SYNE2-209ENST00000553308 MKI67P46013 3256 aaKnown RBP11.51□□□□□ -0.57
SYNE2-209ENST00000553308 TNNI2P48788 182 aa11.51□□□□□ -0.57
SYNE2-209ENST00000553308 SLC4A8Q2Y0W8 1093 aa11.51□□□□□ -0.57
SYNE2-209ENST00000553308 COLQQ9Y215 455 aaPredicted RBP11.51□□□□□ -0.57
SYNE2-209ENST00000553308 SPDYE5A6NIY4 337 aa11.5□□□□□ -0.57
SYNE2-209ENST00000553308 CHAF1AQ13111 956 aaPredicted RBP11.5□□□□□ -0.57
SYNE2-209ENST00000553308 ARHGEF6Q15052 776 aa11.5□□□□□ -0.57
SYNE2-209ENST00000553308 NBPF11Q86T75 865 aa11.5□□□□□ -0.57
SYNE2-209ENST00000553308 SH3TC2Q8TF17 1288 aa11.5□□□□□ -0.57
SYNE2-209ENST00000553308 SUCLG2Q96I99 432 aa11.5□□□□□ -0.57
SYNE2-209ENST00000553308 C9orf78Q9NZ63 289 aaPredicted RBP11.5□□□□□ -0.57
SYNE2-209ENST00000553308 SALL2Q9Y467 1007 aaPredicted RBP11.5□□□□□ -0.57
SYNE2-209ENST00000553308 SNCAIPQ9Y6H5 919 aa11.5□□□□□ -0.57
SYNE2-209ENST00000553308 BTBD19C9JJ37 291 aa11.49□□□□□ -0.57
SYNE2-209ENST00000553308 TLR2O60603 784 aa11.49□□□□□ -0.57
SYNE2-209ENST00000553308 ECM2O94769 699 aaPredicted RBP11.49□□□□□ -0.57
SYNE2-209ENST00000553308 LACTBP83111 547 aaPredicted RBP11.49□□□□□ -0.57
SYNE2-209ENST00000553308 KAZALD1Q96I82 304 aa11.49□□□□□ -0.57
SYNE2-209ENST00000553308 WRNIP1Q96S55 665 aa11.49□□□□□ -0.57
SYNE2-209ENST00000553308 SPINK5Q9NQ38 1064 aaPredicted RBP11.49□□□□□ -0.57
SYNE2-209ENST00000553308 RIPOR2Q9Y4F9 1068 aa11.49□□□□□ -0.57
SYNE2-209ENST00000553308 CENPFP49454 3210 aa11.48□□□□□ -0.57
SYNE2-209ENST00000553308 H0YGN5 161 aa11.48□□□□□ -0.57
SYNE2-209ENST00000553308 IRF6O14896 467 aa11.48□□□□□ -0.57
SYNE2-209ENST00000553308 ALDH1L1O75891 902 aa11.48□□□□□ -0.57
SYNE2-209ENST00000553308 CETPP11597 493 aa11.48□□□□□ -0.57
SYNE2-209ENST00000553308 NCBP3Q53F19 620 aaKnown RBP11.48□□□□□ -0.57
SYNE2-209ENST00000553308 SLC4A10Q6U841 1118 aa11.48□□□□□ -0.57
SYNE2-209ENST00000553308 FBXO33Q7Z6M2 555 aa11.48□□□□□ -0.57
SYNE2-209ENST00000553308 VPS37DQ86XT2 251 aa11.48□□□□□ -0.57
SYNE2-209ENST00000553308 ERO1BQ86YB8 467 aa11.48□□□□□ -0.57
SYNE2-209ENST00000553308 ZKSCAN4Q969J2 545 aaPredicted RBP11.48□□□□□ -0.57
SYNE2-209ENST00000553308 TEKT1Q969V4 418 aa11.48□□□□□ -0.57
SYNE2-209ENST00000553308 SRCIN1Q9C0H9 1055 aa11.48□□□□□ -0.57
SYNE2-209ENST00000553308 MROH5Q6ZUA9 1318 aa11.47□□□□□ -0.57
SYNE2-209ENST00000553308 NBPF7P0C2Y1 421 aaPredicted RBP11.47□□□□□ -0.57
SYNE2-209ENST00000553308 HDLBPQ00341 1268 aaKnown RBP11.47□□□□□ -0.57
SYNE2-209ENST00000553308 SNAPC2Q13487 334 aa11.47□□□□□ -0.57
SYNE2-209ENST00000553308 KIF22Q14807 665 aa11.47□□□□□ -0.57
SYNE2-209ENST00000553308 LRRC24Q50LG9 513 aa11.47□□□□□ -0.57
SYNE2-209ENST00000553308 WDR63Q8IWG1 891 aa11.47□□□□□ -0.57
SYNE2-209ENST00000553308 ZCCHC17Q9NP64 241 aaKnown RBP11.47□□□□□ -0.57
SYNE2-209ENST00000553308 BRCA2P51587 3418 aa11.47□□□□□ -0.57
SYNE2-209ENST00000553308 RPAP1Q9BWH6 1393 aaPredicted RBP11.46□□□□□ -0.57
SYNE2-209ENST00000553308 FRAT2O75474 233 aaPredicted RBP11.46□□□□□ -0.57
SYNE2-209ENST00000553308 WDHD1O75717 1129 aaPredicted RBP11.46□□□□□ -0.57
SYNE2-209ENST00000553308 CTGFP29279 349 aa11.46□□□□□ -0.57
SYNE2-209ENST00000553308 PPIL2Q13356 520 aa11.46□□□□□ -0.57
SYNE2-209ENST00000553308 MTFR1Q15390 333 aa11.46□□□□□ -0.57
SYNE2-209ENST00000553308 METTL24Q5JXM2 366 aa11.46□□□□□ -0.57
SYNE2-209ENST00000553308 APOBEC3HQ6NTF7 200 aaKnown RBP11.46□□□□□ -0.57
SYNE2-209ENST00000553308 FAM83AQ86UY5 434 aa11.46□□□□□ -0.57
SYNE2-209ENST00000553308 VGLL2Q8N8G2 317 aa11.46□□□□□ -0.57
SYNE2-209ENST00000553308 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.46□□□□□ -0.57
SYNE2-209ENST00000553308 TBC1D22AQ8WUA7 517 aa11.46□□□□□ -0.57
SYNE2-209ENST00000553308 SHISA4Q96DD7 197 aa11.46□□□□□ -0.57
SYNE2-209ENST00000553308 ZDHHC15Q96MV8 337 aa11.46□□□□□ -0.57
SYNE2-209ENST00000553308 BICC1Q9H694 974 aaKnown RBP11.46□□□□□ -0.57
SYNE2-209ENST00000553308 TMOD2Q9NZR1 351 aa11.46□□□□□ -0.57
SYNE2-209ENST00000553308 CPA4Q9UI42 421 aa11.46□□□□□ -0.57
SYNE2-209ENST00000553308 INPP5BP32019 993 aa11.45□□□□□ -0.58
SYNE2-209ENST00000553308 BCAMP50895 628 aa11.45□□□□□ -0.58
SYNE2-209ENST00000553308 RABL6Q3YEC7 729 aaPredicted RBP11.45□□□□□ -0.58
SYNE2-209ENST00000553308 CAVIN4Q5BKX8 364 aa11.45□□□□□ -0.58
SYNE2-209ENST00000553308 MIGA2Q7L4E1 593 aa11.45□□□□□ -0.58
SYNE2-209ENST00000553308 ANKRD44Q8N8A2 993 aa11.45□□□□□ -0.58
SYNE2-209ENST00000553308 KLHDC4Q8TBB5 520 aa11.45□□□□□ -0.58
SYNE2-209ENST00000553308 MRS2Q9HD23 443 aa11.45□□□□□ -0.58
SYNE2-209ENST00000553308 UTYO14607 1347 aa11.44□□□□□ -0.58
SYNE2-209ENST00000553308 MAST3O60307 1309 aa11.44□□□□□ -0.58
SYNE2-209ENST00000553308 ADGRA2Q96PE1 1338 aa11.44□□□□□ -0.58
SYNE2-209ENST00000553308 PDE8BO95263 885 aa11.44□□□□□ -0.58
SYNE2-209ENST00000553308 GNRH1P01148 92 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms