RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 RSPO4Q2I0M5 234 aaPredicted RBP7.68□□□□□ -1.18
SCFD1-209ENST00000553280 RELL1Q8IUW5 271 aa7.68□□□□□ -1.18
SCFD1-209ENST00000553280 CCNJLQ8IV13 435 aa7.68□□□□□ -1.18
SCFD1-209ENST00000553280 LENG1Q96BZ8 264 aaPredicted RBP7.68□□□□□ -1.18
SCFD1-209ENST00000553280 SPATA32Q96LK8 384 aa7.68□□□□□ -1.18
SCFD1-209ENST00000553280 TCF12Q99081 682 aa7.68□□□□□ -1.18
SCFD1-209ENST00000553280 LIN7BQ9HAP6 207 aa7.68□□□□□ -1.18
SCFD1-209ENST00000553280 ZFYVE1Q9HBF4 777 aa7.68□□□□□ -1.18
SCFD1-209ENST00000553280 ABCB6Q9NP58 842 aa7.68□□□□□ -1.18
SCFD1-209ENST00000553280 RLBP1P12271 317 aa7.67□□□□□ -1.18
SCFD1-209ENST00000553280 ITGB7P26010 798 aa7.67□□□□□ -1.18
SCFD1-209ENST00000553280 HYAL2Q12891 473 aa7.67□□□□□ -1.18
SCFD1-209ENST00000553280 CCDC85BQ15834 202 aaPredicted RBP7.67□□□□□ -1.18
SCFD1-209ENST00000553280 DTHD1Q6ZMT9 781 aa7.67□□□□□ -1.18
SCFD1-209ENST00000553280 SV2BQ7L1I2 683 aa7.67□□□□□ -1.18
SCFD1-209ENST00000553280 TXNRD3Q86VQ6 643 aa7.67□□□□□ -1.18
SCFD1-209ENST00000553280 NCAPG2Q86XI2 1143 aa7.67□□□□□ -1.18
SCFD1-209ENST00000553280 FBXO11Q86XK2 927 aa7.67□□□□□ -1.18
SCFD1-209ENST00000553280 MCF2L2Q86YR7 1114 aa7.67□□□□□ -1.18
SCFD1-209ENST00000553280 IL22RA1Q8N6P7 574 aa7.67□□□□□ -1.18
SCFD1-209ENST00000553280 CEP120Q8N960 986 aa7.67□□□□□ -1.18
SCFD1-209ENST00000553280 RASGRP4Q8TDF6 673 aa7.67□□□□□ -1.18
SCFD1-209ENST00000553280 GPRASP2Q96D09 838 aa7.67□□□□□ -1.18
SCFD1-209ENST00000553280 OSMRQ99650 979 aa7.67□□□□□ -1.18
SCFD1-209ENST00000553280 LNPKQ9C0E8 428 aa7.67□□□□□ -1.18
SCFD1-209ENST00000553280 TRIM33Q9UPN9 1127 aa7.67□□□□□ -1.18
SCFD1-209ENST00000553280 SMARCA5O60264 1052 aaPredicted RBP7.66□□□□□ -1.18
SCFD1-209ENST00000553280 DEAF1O75398 565 aaPredicted RBP7.66□□□□□ -1.18
SCFD1-209ENST00000553280 FGRP09769 529 aa7.66□□□□□ -1.18
SCFD1-209ENST00000553280 ATP11AP98196 1134 aa7.66□□□□□ -1.18
SCFD1-209ENST00000553280 NRG1Q02297 640 aaPredicted RBP7.66□□□□□ -1.18
SCFD1-209ENST00000553280 SOGA3Q5TF21 947 aa7.66□□□□□ -1.18
SCFD1-209ENST00000553280 DTWD1Q8N5C7 304 aa7.66□□□□□ -1.18
SCFD1-209ENST00000553280 TMEM74Q96NL1 305 aa7.66□□□□□ -1.18
SCFD1-209ENST00000553280 ZKSCAN3Q9BRR0 538 aa7.66□□□□□ -1.18
SCFD1-209ENST00000553280 SPON2Q9BUD6 331 aa7.66□□□□□ -1.18
SCFD1-209ENST00000553280 AKAP2Q9Y2D5 859 aa7.66□□□□□ -1.18
SCFD1-209ENST00000553280 CADPSQ9ULU8 1353 aa7.66□□□□□ -1.18
SCFD1-209ENST00000553280 NKAPLQ5M9Q1 402 aa7.65□□□□□ -1.18
SCFD1-209ENST00000553280 CEP135Q66GS9 1140 aa7.65□□□□□ -1.18
SCFD1-209ENST00000553280 NOP9Q86U38 636 aaKnown RBP7.65□□□□□ -1.18
SCFD1-209ENST00000553280 SPACA7Q96KW9 195 aa7.65□□□□□ -1.18
SCFD1-209ENST00000553280 PUS7Q96PZ0 661 aaKnown RBP7.65□□□□□ -1.18
SCFD1-209ENST00000553280 HIRIP3Q9BW71 556 aaPredicted RBP7.65□□□□□ -1.18
SCFD1-209ENST00000553280 DZANK1Q9NVP4 752 aa7.65□□□□□ -1.18
SCFD1-209ENST00000553280 ADAMTS1Q9UHI8 967 aa7.65□□□□□ -1.18
SCFD1-209ENST00000553280 ITPKAP23677 461 aa7.64□□□□□ -1.19
SCFD1-209ENST00000553280 GBP2P32456 591 aaPredicted RBP7.64□□□□□ -1.19
SCFD1-209ENST00000553280 EIF4A3P38919 411 aaKnown RBP7.64□□□□□ -1.19
SCFD1-209ENST00000553280 KIAA0825Q8IV33 1275 aa7.64□□□□□ -1.19
SCFD1-209ENST00000553280 SEC16BQ96JE7 1060 aa7.64□□□□□ -1.19
SCFD1-209ENST00000553280 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.64□□□□□ -1.19
SCFD1-209ENST00000553280 TRIM56Q9BRZ2 755 aaKnown RBP7.64□□□□□ -1.19
SCFD1-209ENST00000553280 LACRTQ9GZZ8 138 aa7.64□□□□□ -1.19
SCFD1-209ENST00000553280 MINDY4BA8MYZ0 360 aa7.63□□□□□ -1.19
SCFD1-209ENST00000553280 NFKBIEO00221 500 aa7.63□□□□□ -1.19
SCFD1-209ENST00000553280 DYRK3O43781 588 aa7.63□□□□□ -1.19
SCFD1-209ENST00000553280 GRIA4P48058 902 aa7.63□□□□□ -1.19
SCFD1-209ENST00000553280 IREB2P48200 963 aaKnown RBP7.63□□□□□ -1.19
SCFD1-209ENST00000553280 GIMAP6Q6P9H5 292 aa7.63□□□□□ -1.19
SCFD1-209ENST00000553280 TMEM102Q8N9M5 508 aaPredicted RBP7.63□□□□□ -1.19
SCFD1-209ENST00000553280 NXPE3Q969Y0 559 aa7.63□□□□□ -1.19
SCFD1-209ENST00000553280 TP53INP1Q96A56 240 aa7.63□□□□□ -1.19
SCFD1-209ENST00000553280 CEP44Q9C0F1 390 aa7.63□□□□□ -1.19
SCFD1-209ENST00000553280 BHLHE41Q9C0J9 482 aaPredicted RBP7.63□□□□□ -1.19
SCFD1-209ENST00000553280 RASSF4Q9H2L5 321 aa7.63□□□□□ -1.19
SCFD1-209ENST00000553280 KCNQ5Q9NR82 932 aa7.63□□□□□ -1.19
SCFD1-209ENST00000553280 STK10O94804 968 aaKnown RBP7.62□□□□□ -1.19
SCFD1-209ENST00000553280 ACPPP15309 386 aa7.62□□□□□ -1.19
SCFD1-209ENST00000553280 CDC25BP30305 580 aa7.62□□□□□ -1.19
SCFD1-209ENST00000553280 CCDC144BQ3MJ40 725 aa7.62□□□□□ -1.19
SCFD1-209ENST00000553280 TXNDC11Q6PKC3 985 aa7.62□□□□□ -1.19
SCFD1-209ENST00000553280 IGF2-ASQ6U949 168 aa7.62□□□□□ -1.19
SCFD1-209ENST00000553280 ADAMTSL4Q6UY14 1074 aa7.62□□□□□ -1.19
SCFD1-209ENST00000553280 ZNF296Q8WUU4 475 aaPredicted RBP7.62□□□□□ -1.19
SCFD1-209ENST00000553280 WFDC12Q8WWY7 111 aa7.62□□□□□ -1.19
SCFD1-209ENST00000553280 LINC01387J3KSC0 135 aa7.61□□□□□ -1.19
SCFD1-209ENST00000553280 TRPA1O75762 1119 aa7.61□□□□□ -1.19
SCFD1-209ENST00000553280 SMNDC1O75940 238 aaKnown RBP eCLIP7.61□□□□□ -1.19
SCFD1-209ENST00000553280 HMGB1P09429 215 aaKnown RBP7.61□□□□□ -1.19
SCFD1-209ENST00000553280 NOS3P29474 1203 aa7.61□□□□□ -1.19
SCFD1-209ENST00000553280 SPRED3Q2MJR0 410 aa7.61□□□□□ -1.19
SCFD1-209ENST00000553280 RPS26P11Q5JNZ5 115 aaPredicted RBP7.61□□□□□ -1.19
SCFD1-209ENST00000553280 PHC3Q8NDX5 983 aa7.61□□□□□ -1.19
SCFD1-209ENST00000553280 EAF1Q96JC9 268 aaPredicted RBP7.61□□□□□ -1.19
SCFD1-209ENST00000553280 RHOVQ96L33 236 aa7.61□□□□□ -1.19
SCFD1-209ENST00000553280 A0A096LPE4 126 aa7.6□□□□□ -1.19
SCFD1-209ENST00000553280 A0A1W2PPZ6 126 aa7.6□□□□□ -1.19
SCFD1-209ENST00000553280 DLL1O00548 723 aa7.6□□□□□ -1.19
SCFD1-209ENST00000553280 GREM1O60565 184 aa7.6□□□□□ -1.19
SCFD1-209ENST00000553280 FBXO24O75426 580 aa7.6□□□□□ -1.19
SCFD1-209ENST00000553280 ALX3O95076 343 aa7.6□□□□□ -1.19
SCFD1-209ENST00000553280 SETDB1Q15047 1291 aa7.6□□□□□ -1.19
SCFD1-209ENST00000553280 FBXL19Q6PCT2 694 aa7.6□□□□□ -1.19
SCFD1-209ENST00000553280 TPTE2Q6XPS3 522 aa7.6□□□□□ -1.19
SCFD1-209ENST00000553280 NECAB3Q96P71 396 aaPredicted RBP7.6□□□□□ -1.19
SCFD1-209ENST00000553280 NT5C1AQ9BXI3 368 aa7.6□□□□□ -1.19
SCFD1-209ENST00000553280 PPME1Q9Y570 386 aa7.6□□□□□ -1.19
SCFD1-209ENST00000553280 F6X3S4 739 aa7.59□□□□□ -1.19
SCFD1-209ENST00000553280 PDE2AO00408 941 aaPredicted RBP7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms