RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 ADAMTSL3P82987 1691 aa6.53□□□□□ -1.36
LIMA1-215ENST00000552823 F8W031 263 aaPredicted RBP6.53□□□□□ -1.36
LIMA1-215ENST00000552823 GOLGA6L19H0YKK7 550 aa6.53□□□□□ -1.36
LIMA1-215ENST00000552823 PFKFB2O60825 505 aa6.53□□□□□ -1.36
LIMA1-215ENST00000552823 ZPR1O75312 459 aa6.53□□□□□ -1.36
LIMA1-215ENST00000552823 CSF1RP07333 972 aa6.53□□□□□ -1.36
LIMA1-215ENST00000552823 FDPSP14324 419 aaKnown RBP6.53□□□□□ -1.36
LIMA1-215ENST00000552823 CDC27P30260 824 aa6.53□□□□□ -1.36
LIMA1-215ENST00000552823 ADD2P35612 726 aa6.53□□□□□ -1.36
LIMA1-215ENST00000552823 RESTQ13127 1097 aa6.53□□□□□ -1.36
LIMA1-215ENST00000552823 ARID5BQ14865 1188 aa6.53□□□□□ -1.36
LIMA1-215ENST00000552823 PUM3Q15397 648 aaKnown RBP6.53□□□□□ -1.36
LIMA1-215ENST00000552823 FAM47AQ5JRC9 791 aa6.53□□□□□ -1.36
LIMA1-215ENST00000552823 CCDC186Q7Z3E2 898 aa6.53□□□□□ -1.36
LIMA1-215ENST00000552823 ANKRD18AQ8IVF6 992 aa6.53□□□□□ -1.36
LIMA1-215ENST00000552823 ANKIB1Q9P2G1 1089 aa6.53□□□□□ -1.36
LIMA1-215ENST00000552823 MRVI1Q9Y6F6 885 aa6.53□□□□□ -1.36
LIMA1-215ENST00000552823 NEDD4P46934 1319 aa6.53□□□□□ -1.36
LIMA1-215ENST00000552823 KIF28PB7ZC32 967 aa6.52□□□□□ -1.36
LIMA1-215ENST00000552823 FOXP2O15409 715 aa6.52□□□□□ -1.36
LIMA1-215ENST00000552823 IL6STP40189 918 aaPredicted RBP6.52□□□□□ -1.36
LIMA1-215ENST00000552823 EIF5P55010 431 aaKnown RBP6.52□□□□□ -1.36
LIMA1-215ENST00000552823 TBC1D9BQ66K14 1250 aa6.52□□□□□ -1.36
LIMA1-215ENST00000552823 IFNL3Q8IZI9 196 aa6.52□□□□□ -1.36
LIMA1-215ENST00000552823 LPIN2Q92539 896 aa6.52□□□□□ -1.36
LIMA1-215ENST00000552823 ZBTB9Q96C00 473 aa6.52□□□□□ -1.36
LIMA1-215ENST00000552823 UIMC1Q96RL1 719 aa6.52□□□□□ -1.36
LIMA1-215ENST00000552823 PPP1R9BQ96SB3 815 aa6.52□□□□□ -1.36
LIMA1-215ENST00000552823 GOLPH3LQ9H4A5 285 aa6.52□□□□□ -1.36
LIMA1-215ENST00000552823 CBX8Q9HC52 389 aa6.52□□□□□ -1.36
LIMA1-215ENST00000552823 AATFQ9NY61 560 aaKnown RBP eCLIP6.52□□□□□ -1.36
LIMA1-215ENST00000552823 ZSWIM5Q9P217 1185 aa6.52□□□□□ -1.36
LIMA1-215ENST00000552823 CCDC39Q9UFE4 941 aa6.52□□□□□ -1.36
LIMA1-215ENST00000552823 SLC12A7Q9Y666 1083 aa6.52□□□□□ -1.36
LIMA1-215ENST00000552823 ZBTB43O43298 467 aa6.52□□□□□ -1.37
LIMA1-215ENST00000552823 CIAO1O76071 339 aa6.52□□□□□ -1.37
LIMA1-215ENST00000552823 GUCY1A2P33402 732 aa6.52□□□□□ -1.37
LIMA1-215ENST00000552823 IARSP41252 1262 aaKnown RBP6.52□□□□□ -1.37
LIMA1-215ENST00000552823 EXOSC10Q01780 885 aaKnown RBP6.52□□□□□ -1.37
LIMA1-215ENST00000552823 MFSD6Q6ZSS7 791 aa6.52□□□□□ -1.37
LIMA1-215ENST00000552823 LINC00116Q8NCU8 138 aa6.52□□□□□ -1.37
LIMA1-215ENST00000552823 NMT2O60551 498 aa6.52□□□□□ -1.37
LIMA1-215ENST00000552823 COBLO75128 1261 aa6.52□□□□□ -1.37
LIMA1-215ENST00000552823 HMGB1P09429 215 aaKnown RBP6.52□□□□□ -1.37
LIMA1-215ENST00000552823 CYP2D6P10635 497 aa6.52□□□□□ -1.37
LIMA1-215ENST00000552823 TRIM29Q14134 588 aa6.52□□□□□ -1.37
LIMA1-215ENST00000552823 C11orf57Q6ZUT1 292 aaPredicted RBP6.52□□□□□ -1.37
LIMA1-215ENST00000552823 AMIGO3Q86WK7 504 aa6.52□□□□□ -1.37
LIMA1-215ENST00000552823 STAMQ92783 540 aa6.52□□□□□ -1.37
LIMA1-215ENST00000552823 KCNB2Q92953 911 aa6.52□□□□□ -1.37
LIMA1-215ENST00000552823 SETDB2Q96T68 719 aa6.52□□□□□ -1.37
LIMA1-215ENST00000552823 TRMT1Q9NXH9 659 aaKnown RBP6.52□□□□□ -1.37
LIMA1-215ENST00000552823 CCNL1Q9UK58 526 aaPredicted RBP6.52□□□□□ -1.37
LIMA1-215ENST00000552823 CFAP45Q9UL16 551 aa6.52□□□□□ -1.37
LIMA1-215ENST00000552823 KIF3AQ9Y496 699 aa6.52□□□□□ -1.37
LIMA1-215ENST00000552823 CACNA1FO60840 1977 aa6.52□□□□□ -1.37
LIMA1-215ENST00000552823 PALLDQ8WX93 1383 aa6.52□□□□□ -1.37
LIMA1-215ENST00000552823 CPLX2Q6PUV4 134 aaKnown RBP6.51□□□□□ -1.37
LIMA1-215ENST00000552823 ADGRA1Q86SQ6 560 aa6.51□□□□□ -1.37
LIMA1-215ENST00000552823 TXNRD3Q86VQ6 643 aa6.51□□□□□ -1.37
LIMA1-215ENST00000552823 STRBPQ96SI9 672 aaKnown RBP6.51□□□□□ -1.37
LIMA1-215ENST00000552823 EPB41L4AQ9HCS5 686 aaPredicted RBP6.51□□□□□ -1.37
LIMA1-215ENST00000552823 PYCARDQ9ULZ3 195 aa6.51□□□□□ -1.37
LIMA1-215ENST00000552823 PCDHA7Q9UN72 937 aa6.51□□□□□ -1.37
LIMA1-215ENST00000552823 ZKSCAN5Q9Y2L8 839 aa6.51□□□□□ -1.37
LIMA1-215ENST00000552823 STRCP1A6NGW2 1772 aa6.51□□□□□ -1.37
LIMA1-215ENST00000552823 LRRC37A3O60309 1634 aa6.51□□□□□ -1.37
LIMA1-215ENST00000552823 ERICH2A1L162 156 aa6.51□□□□□ -1.37
LIMA1-215ENST00000552823 BTBD18B2RXH4 712 aa6.51□□□□□ -1.37
LIMA1-215ENST00000552823 RIMBP2O15034 1052 aa6.51□□□□□ -1.37
LIMA1-215ENST00000552823 CAMTA2O94983 1202 aa6.51□□□□□ -1.37
LIMA1-215ENST00000552823 SMC2O95347 1197 aa6.51□□□□□ -1.37
LIMA1-215ENST00000552823 ZFYP08048 801 aaPredicted RBP6.51□□□□□ -1.37
LIMA1-215ENST00000552823 KRT40Q6A162 431 aa6.51□□□□□ -1.37
LIMA1-215ENST00000552823 ZSCAN25Q6NSZ9 544 aa6.51□□□□□ -1.37
LIMA1-215ENST00000552823 ZNF34Q8IZ26 560 aa6.51□□□□□ -1.37
LIMA1-215ENST00000552823 AOPEPQ8N6M6 819 aa6.51□□□□□ -1.37
LIMA1-215ENST00000552823 ZNF396Q96N95 335 aaPredicted RBP6.51□□□□□ -1.37
LIMA1-215ENST00000552823 UBAC1Q9BSL1 405 aa6.51□□□□□ -1.37
LIMA1-215ENST00000552823 GPR108Q9NPR9 543 aa6.51□□□□□ -1.37
LIMA1-215ENST00000552823 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.51□□□□□ -1.37
LIMA1-215ENST00000552823 SAP30BPQ9UHR5 308 aaKnown RBP6.51□□□□□ -1.37
LIMA1-215ENST00000552823 USP17L12C9JPN9 530 aa6.51□□□□□ -1.37
LIMA1-215ENST00000552823 USP17L21D6R901 530 aa6.51□□□□□ -1.37
LIMA1-215ENST00000552823 NDUFA8P51970 172 aa6.51□□□□□ -1.37
LIMA1-215ENST00000552823 HMGN5P82970 282 aaKnown RBP6.51□□□□□ -1.37
LIMA1-215ENST00000552823 AKAP17AQ02040 695 aaKnown RBP6.51□□□□□ -1.37
LIMA1-215ENST00000552823 TRIM28Q13263 835 aaKnown RBP6.51□□□□□ -1.37
LIMA1-215ENST00000552823 NR5A1Q13285 461 aa6.51□□□□□ -1.37
LIMA1-215ENST00000552823 MAPK8IP2Q13387 824 aaPredicted RBP6.51□□□□□ -1.37
LIMA1-215ENST00000552823 SAMD1Q6SPF0 538 aaPredicted RBP6.51□□□□□ -1.37
LIMA1-215ENST00000552823 MB21D2Q8IYB1 491 aaPredicted RBP6.51□□□□□ -1.37
LIMA1-215ENST00000552823 CPVLQ9H3G5 476 aa6.51□□□□□ -1.37
LIMA1-215ENST00000552823 TMX1Q9H3N1 280 aa6.51□□□□□ -1.37
LIMA1-215ENST00000552823 VAT1LQ9HCJ6 419 aa6.51□□□□□ -1.37
LIMA1-215ENST00000552823 USP21Q9UK80 565 aa6.51□□□□□ -1.37
LIMA1-215ENST00000552823 ANGEL1Q9UNK9 670 aaKnown RBP6.51□□□□□ -1.37
LIMA1-215ENST00000552823 TACC3Q9Y6A5 838 aa6.51□□□□□ -1.37
LIMA1-215ENST00000552823 UTRNP46939 3433 aa6.5□□□□□ -1.37
LIMA1-215ENST00000552823 KDM3BQ7LBC6 1761 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms