RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	5.7	□□□□□ -1.5
USP44-208	ENST00000552440	SCAMP3	O14828	347 aa	Known RBP	5.7	□□□□□ -1.5
USP44-208	ENST00000552440	NDUFB5	O43674	189 aa		5.7	□□□□□ -1.5
USP44-208	ENST00000552440	PEX14	O75381	377 aa		5.7	□□□□□ -1.5
USP44-208	ENST00000552440	MAP4K4	O95819	1239 aa	Predicted RBP	5.7	□□□□□ -1.5
USP44-208	ENST00000552440	CENPB	P07199	599 aa	Predicted RBP	5.7	□□□□□ -1.5
USP44-208	ENST00000552440	IRAK1	P51617	712 aa		5.7	□□□□□ -1.5
USP44-208	ENST00000552440	XKR5	Q6UX68	686 aa		5.7	□□□□□ -1.5
USP44-208	ENST00000552440	CLEC10A	Q8IUN9	316 aa		5.7	□□□□□ -1.5
USP44-208	ENST00000552440	DHX38	Q92620	1227 aa	Known RBP	5.7	□□□□□ -1.5
USP44-208	ENST00000552440	LACRT	Q9GZZ8	138 aa		5.7	□□□□□ -1.5
USP44-208	ENST00000552440	ELP3	Q9H9T3	547 aa		5.7	□□□□□ -1.5
USP44-208	ENST00000552440	KIAA1324L	A8MWY0	1029 aa	Predicted RBP	5.69	□□□□□ -1.5
USP44-208	ENST00000552440	SSTR4	P31391	388 aa		5.69	□□□□□ -1.5
USP44-208	ENST00000552440	RAD51AP2	Q09MP3	1159 aa		5.69	□□□□□ -1.5
USP44-208	ENST00000552440	DSC3	Q14574	896 aa		5.69	□□□□□ -1.5
USP44-208	ENST00000552440	C9orf131	Q5VYM1	1079 aa		5.69	□□□□□ -1.5
USP44-208	ENST00000552440	RNF43	Q68DV7	783 aa		5.69	□□□□□ -1.5
USP44-208	ENST00000552440	ALKBH2	Q6NS38	261 aa		5.69	□□□□□ -1.5
USP44-208	ENST00000552440	ZNF438	Q7Z4V0	828 aa		5.69	□□□□□ -1.5
USP44-208	ENST00000552440	CEP120	Q8N960	986 aa		5.69	□□□□□ -1.5
USP44-208	ENST00000552440	FAM46A	Q96IP4	442 aa	Known RBP	5.69	□□□□□ -1.5
USP44-208	ENST00000552440	CITED4	Q96RK1	184 aa		5.69	□□□□□ -1.5
USP44-208	ENST00000552440	DBNDD2	Q9BQY9	259 aa		5.69	□□□□□ -1.5
USP44-208	ENST00000552440	TINF2	Q9BSI4	451 aa		5.69	□□□□□ -1.5
USP44-208	ENST00000552440	PRKAG2	Q9UGJ0	569 aa		5.69	□□□□□ -1.5
USP44-208	ENST00000552440		H3BRJ5	948 aa		5.69	□□□□□ -1.5
USP44-208	ENST00000552440	IGHA2	P01877	340 aa		5.69	□□□□□ -1.5
USP44-208	ENST00000552440	IBSP	P21815	317 aa	Predicted RBP	5.69	□□□□□ -1.5
USP44-208	ENST00000552440	ANAPC15	P60006	121 aa		5.69	□□□□□ -1.5
USP44-208	ENST00000552440	NFIA	Q12857	509 aa		5.69	□□□□□ -1.5
USP44-208	ENST00000552440	NLGN1	Q8N2Q7	840 aa		5.69	□□□□□ -1.5
USP44-208	ENST00000552440	GALNT11	Q8NCW6	608 aa		5.69	□□□□□ -1.5
USP44-208	ENST00000552440	MYRFL	Q96LU7	910 aa		5.69	□□□□□ -1.5
USP44-208	ENST00000552440	UBL7	Q96S82	380 aa	Predicted RBP	5.69	□□□□□ -1.5
USP44-208	ENST00000552440	RNF208	Q9H0X6	261 aa		5.69	□□□□□ -1.5
USP44-208	ENST00000552440	RASSF4	Q9H2L5	321 aa		5.69	□□□□□ -1.5
USP44-208	ENST00000552440	KRTAP9-6	A0A140TA67	174 aa		5.68	□□□□□ -1.5
USP44-208	ENST00000552440	CCDC194	A0A1B0GVG4	234 aa		5.68	□□□□□ -1.5
USP44-208	ENST00000552440	FZD6	O60353	706 aa		5.68	□□□□□ -1.5
USP44-208	ENST00000552440	ATP2B1	P20020	1258 aa		5.68	□□□□□ -1.5
USP44-208	ENST00000552440	ATP11A	P98196	1134 aa		5.68	□□□□□ -1.5
USP44-208	ENST00000552440	SPTY2D1	Q68D10	685 aa	Predicted RBP	5.68	□□□□□ -1.5
USP44-208	ENST00000552440	SMC5	Q8IY18	1101 aa		5.68	□□□□□ -1.5
USP44-208	ENST00000552440	AGGF1	Q8N302	714 aa	eCLIP	5.68	□□□□□ -1.5
USP44-208	ENST00000552440	ARMC5	Q96C12	935 aa		5.68	□□□□□ -1.5
USP44-208	ENST00000552440	FAM83C	Q9BQN1	747 aa		5.68	□□□□□ -1.5
USP44-208	ENST00000552440	CES1	P23141	567 aa		5.67	□□□□□ -1.5
USP44-208	ENST00000552440	GTF2F1	P35269	517 aa	Known RBP eCLIP	5.67	□□□□□ -1.5
USP44-208	ENST00000552440	EIF1AX	P47813	144 aa	Known RBP	5.67	□□□□□ -1.5
USP44-208	ENST00000552440	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	5.67	□□□□□ -1.5
USP44-208	ENST00000552440	SLC43A3	Q8NBI5	491 aa		5.67	□□□□□ -1.5
USP44-208	ENST00000552440	BRINP2	Q9C0B6	783 aa		5.67	□□□□□ -1.5
USP44-208	ENST00000552440	PIF1	Q9H611	641 aa		5.67	□□□□□ -1.5
USP44-208	ENST00000552440	GOLGA2P5	Q9HBQ8	144 aa		5.67	□□□□□ -1.5
USP44-208	ENST00000552440	CCDC87	Q9NVE4	849 aa		5.67	□□□□□ -1.5
USP44-208	ENST00000552440	NOP58	Q9Y2X3	529 aa	Known RBP	5.67	□□□□□ -1.5
USP44-208	ENST00000552440	PRPF40A	O75400	957 aa	Known RBP	5.67	□□□□□ -1.5
USP44-208	ENST00000552440	LDHB	P07195	334 aa	Known RBP	5.67	□□□□□ -1.5
USP44-208	ENST00000552440	FGD1	P98174	961 aa		5.67	□□□□□ -1.5
USP44-208	ENST00000552440	PLCB3	Q01970	1234 aa		5.67	□□□□□ -1.5
USP44-208	ENST00000552440	EHHADH	Q08426	723 aa		5.67	□□□□□ -1.5
USP44-208	ENST00000552440	RALBP1	Q15311	655 aa		5.67	□□□□□ -1.5
USP44-208	ENST00000552440	CPSF6	Q16630	551 aa	Known RBP eCLIP	5.67	□□□□□ -1.5
USP44-208	ENST00000552440	HSP90AB2P	Q58FF8	381 aa		5.67	□□□□□ -1.5
USP44-208	ENST00000552440	COL13A1	Q5TAT6	717 aa	Predicted RBP	5.67	□□□□□ -1.5
USP44-208	ENST00000552440	FDX2	Q6P4F2	183 aa		5.67	□□□□□ -1.5
USP44-208	ENST00000552440	KIAA1211	Q6ZU35	1233 aa		5.67	□□□□□ -1.5
USP44-208	ENST00000552440	TMC1	Q8TDI8	760 aa		5.67	□□□□□ -1.5
USP44-208	ENST00000552440	NUDT16	Q96DE0	195 aa	Known RBP	5.67	□□□□□ -1.5
USP44-208	ENST00000552440	DMRTB1	Q96MA1	342 aa		5.67	□□□□□ -1.5
USP44-208	ENST00000552440	FAM161B	Q96MY7	647 aa		5.67	□□□□□ -1.5
USP44-208	ENST00000552440	FAM129B	Q96TA1	746 aa		5.67	□□□□□ -1.5
USP44-208	ENST00000552440	FAN1	Q9Y2M0	1017 aa		5.67	□□□□□ -1.5
USP44-208	ENST00000552440	MEGF11	A6BM72	1044 aa		5.66	□□□□□ -1.5
USP44-208	ENST00000552440	USP5	P45974	858 aa		5.66	□□□□□ -1.5
USP44-208	ENST00000552440	TCEAL1	Q15170	157 aa		5.66	□□□□□ -1.5
USP44-208	ENST00000552440	TMC4	Q7Z404	712 aa		5.66	□□□□□ -1.5
USP44-208	ENST00000552440	METTL16	Q86W50	562 aa	Known RBP	5.66	□□□□□ -1.5
USP44-208	ENST00000552440	FAM20C	Q8IXL6	584 aa		5.66	□□□□□ -1.5
USP44-208	ENST00000552440	ARMC10	Q8N2F6	343 aa		5.66	□□□□□ -1.5
USP44-208	ENST00000552440	POP1	Q99575	1024 aa	Known RBP	5.66	□□□□□ -1.5
USP44-208	ENST00000552440	DUSP9	Q99956	384 aa	Known RBP	5.66	□□□□□ -1.5
USP44-208	ENST00000552440	PLCD4	Q9BRC7	762 aa		5.66	□□□□□ -1.5
USP44-208	ENST00000552440	C7orf69	Q9H7B7	122 aa		5.66	□□□□□ -1.5
USP44-208	ENST00000552440	RNF19A	Q9NV58	838 aa		5.66	□□□□□ -1.5
USP44-208	ENST00000552440	NLRP2	Q9NX02	1062 aa		5.66	□□□□□ -1.5
USP44-208	ENST00000552440	PARP2	Q9UGN5	583 aa		5.66	□□□□□ -1.5
USP44-208	ENST00000552440	SALL4	Q9UJQ4	1053 aa		5.66	□□□□□ -1.5
USP44-208	ENST00000552440	BTBD11	A6QL63	1104 aa		5.65	□□□□□ -1.5
USP44-208	ENST00000552440	HMGB1P1	B2RPK0	211 aa	Predicted RBP	5.65	□□□□□ -1.5
USP44-208	ENST00000552440	PDE2A	O00408	941 aa	Predicted RBP	5.65	□□□□□ -1.5
USP44-208	ENST00000552440	GPR182	O15218	404 aa		5.65	□□□□□ -1.5
USP44-208	ENST00000552440	EIF3J	O75822	258 aa	Known RBP	5.65	□□□□□ -1.5
USP44-208	ENST00000552440	MZF1	P28698	734 aa	Predicted RBP	5.65	□□□□□ -1.5
USP44-208	ENST00000552440	MAPK8	P45983	427 aa		5.65	□□□□□ -1.5
USP44-208	ENST00000552440	XPC	Q01831	940 aa	Predicted RBP	5.65	□□□□□ -1.5
USP44-208	ENST00000552440	C19orf57	Q0VDD7	668 aa		5.65	□□□□□ -1.5
USP44-208	ENST00000552440	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	5.65	□□□□□ -1.5
USP44-208	ENST00000552440	ZDHHC13	Q8IUH4	622 aa		5.65	□□□□□ -1.5

Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms