RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 WDR66Q8TBY9 1149 aa13.56□□□□□ -0.24
VTI1BP3-201ENST00000550220 TEKT1Q969V4 418 aa13.56□□□□□ -0.24
VTI1BP3-201ENST00000550220 ZNF70Q9UC06 446 aaPredicted RBP13.56□□□□□ -0.24
VTI1BP3-201ENST00000550220 MANSC4A6NHS7 340 aaPredicted RBP13.55□□□□□ -0.24
VTI1BP3-201ENST00000550220 CHAF1AQ13111 956 aaPredicted RBP13.55□□□□□ -0.24
VTI1BP3-201ENST00000550220 PRKG1Q13976 671 aa13.55□□□□□ -0.24
VTI1BP3-201ENST00000550220 SPRYD7Q5W111 196 aa13.55□□□□□ -0.24
VTI1BP3-201ENST00000550220 INTS3Q68E01 1043 aaKnown RBP13.55□□□□□ -0.24
VTI1BP3-201ENST00000550220 HOOK2Q96ED9 719 aa13.55□□□□□ -0.24
VTI1BP3-201ENST00000550220 MCOLN1Q9GZU1 580 aa13.55□□□□□ -0.24
VTI1BP3-201ENST00000550220 CCDC85CA6NKD9 419 aa13.54□□□□□ -0.24
VTI1BP3-201ENST00000550220 ZBTB22O15209 634 aa13.54□□□□□ -0.24
VTI1BP3-201ENST00000550220 PKN2Q16513 984 aaKnown RBP13.54□□□□□ -0.24
VTI1BP3-201ENST00000550220 HHIPL2Q6UWX4 724 aa13.54□□□□□ -0.24
VTI1BP3-201ENST00000550220 ANKRD13AQ8IZ07 590 aa13.54□□□□□ -0.24
VTI1BP3-201ENST00000550220 ZDHHC15Q96MV8 337 aa13.54□□□□□ -0.24
VTI1BP3-201ENST00000550220 CFHR5Q9BXR6 569 aa13.54□□□□□ -0.24
VTI1BP3-201ENST00000550220 TDRD3Q9H7E2 651 aaKnown RBP13.54□□□□□ -0.24
VTI1BP3-201ENST00000550220 COPRSQ9NQ92 184 aa13.54□□□□□ -0.24
VTI1BP3-201ENST00000550220 TMOD2Q9NZR1 351 aa13.54□□□□□ -0.24
VTI1BP3-201ENST00000550220 IQSEC3Q9UPP2 1182 aaPredicted RBP13.54□□□□□ -0.24
VTI1BP3-201ENST00000550220 PCDHAC2Q9Y5I4 1007 aa13.54□□□□□ -0.24
VTI1BP3-201ENST00000550220 SEMA3EO15041 775 aa13.53□□□□□ -0.24
VTI1BP3-201ENST00000550220 USP2O75604 605 aaPredicted RBP13.53□□□□□ -0.24
VTI1BP3-201ENST00000550220 NBPF12Q5TAG4 269 aaPredicted RBP13.53□□□□□ -0.24
VTI1BP3-201ENST00000550220 FKBP1CQ5VVH2 108 aa13.53□□□□□ -0.24
VTI1BP3-201ENST00000550220 OTUD7BQ6GQQ9 843 aa13.53□□□□□ -0.24
VTI1BP3-201ENST00000550220 ATG9AQ7Z3C6 839 aa13.53□□□□□ -0.24
VTI1BP3-201ENST00000550220 CTU1Q7Z7A3 348 aaKnown RBP13.53□□□□□ -0.24
VTI1BP3-201ENST00000550220 LRRFIP2Q9Y608 721 aaKnown RBP13.53□□□□□ -0.24
VTI1BP3-201ENST00000550220 ATP2B3Q16720 1220 aa13.52□□□□□ -0.25
VTI1BP3-201ENST00000550220 FAM83AQ86UY5 434 aa13.52□□□□□ -0.25
VTI1BP3-201ENST00000550220 AKAP2Q9Y2D5 859 aa13.52□□□□□ -0.25
VTI1BP3-201ENST00000550220 MAP3K9P80192 1104 aa13.51□□□□□ -0.25
VTI1BP3-201ENST00000550220 MTX1Q13505 466 aa13.51□□□□□ -0.25
VTI1BP3-201ENST00000550220 ATF7IPQ6VMQ6 1270 aa13.51□□□□□ -0.25
VTI1BP3-201ENST00000550220 ZGPATQ8N5A5 531 aaKnown RBP13.51□□□□□ -0.25
VTI1BP3-201ENST00000550220 WNK4Q96J92 1243 aa13.51□□□□□ -0.25
VTI1BP3-201ENST00000550220 SIL1Q9H173 461 aa13.51□□□□□ -0.25
VTI1BP3-201ENST00000550220 DENND2AQ9ULE3 1009 aa13.51□□□□□ -0.25
VTI1BP3-201ENST00000550220 TCP10L2B9ZVM9 353 aa13.5□□□□□ -0.25
VTI1BP3-201ENST00000550220 GPR25O00155 361 aa13.5□□□□□ -0.25
VTI1BP3-201ENST00000550220 SRGAP3O43295 1099 aa13.5□□□□□ -0.25
VTI1BP3-201ENST00000550220 TBC1D8O95759 1140 aa13.5□□□□□ -0.25
VTI1BP3-201ENST00000550220 RGS19P49795 217 aa13.5□□□□□ -0.25
VTI1BP3-201ENST00000550220 MKRN3Q13064 507 aaKnown RBP13.5□□□□□ -0.25
VTI1BP3-201ENST00000550220 TEPSINQ96N21 525 aa13.5□□□□□ -0.25
VTI1BP3-201ENST00000550220 MEIS3Q99687 375 aa13.5□□□□□ -0.25
VTI1BP3-201ENST00000550220 ZNF646O15015 1829 aaPredicted RBP13.5□□□□□ -0.25
VTI1BP3-201ENST00000550220 SALL1Q9NSC2 1324 aa13.49□□□□□ -0.25
VTI1BP3-201ENST00000550220 FKTNO75072 461 aa13.49□□□□□ -0.25
VTI1BP3-201ENST00000550220 GNAI2P04899 355 aa13.49□□□□□ -0.25
VTI1BP3-201ENST00000550220 TRIM27P14373 513 aa13.49□□□□□ -0.25
VTI1BP3-201ENST00000550220 GRIK5Q16478 980 aa13.49□□□□□ -0.25
VTI1BP3-201ENST00000550220 ZKSCAN2Q63HK3 967 aa13.49□□□□□ -0.25
VTI1BP3-201ENST00000550220 DIEXFQ68CQ4 756 aaKnown RBP13.49□□□□□ -0.25
VTI1BP3-201ENST00000550220 APOBEC3HQ6NTF7 200 aaKnown RBP13.49□□□□□ -0.25
VTI1BP3-201ENST00000550220 IFNL1Q8IU54 200 aa13.49□□□□□ -0.25
VTI1BP3-201ENST00000550220 ZNF296Q8WUU4 475 aaPredicted RBP13.49□□□□□ -0.25
VTI1BP3-201ENST00000550220 FRAT1Q92837 279 aaPredicted RBP13.49□□□□□ -0.25
VTI1BP3-201ENST00000550220 CLMNQ96JQ2 1002 aa13.49□□□□□ -0.25
VTI1BP3-201ENST00000550220 CSADQ9Y600 493 aa13.49□□□□□ -0.25
VTI1BP3-201ENST00000550220 AOX1Q06278 1338 aa13.48□□□□□ -0.25
VTI1BP3-201ENST00000550220 LDHBP07195 334 aaKnown RBP13.48□□□□□ -0.25
VTI1BP3-201ENST00000550220 DCAF15Q66K64 600 aa13.48□□□□□ -0.25
VTI1BP3-201ENST00000550220 SLF2Q8IX21 1173 aa13.48□□□□□ -0.25
VTI1BP3-201ENST00000550220 TMEM39BQ9GZU3 492 aa13.48□□□□□ -0.25
VTI1BP3-201ENST00000550220 FZD1Q9UP38 647 aa13.48□□□□□ -0.25
VTI1BP3-201ENST00000550220 CASP8AP2Q9UKL3 1982 aa13.47□□□□□ -0.25
VTI1BP3-201ENST00000550220 PDS5AQ29RF7 1337 aaKnown RBP13.47□□□□□ -0.25
VTI1BP3-201ENST00000550220 TESPA1A2RU30 521 aaPredicted RBP13.47□□□□□ -0.25
VTI1BP3-201ENST00000550220 WDHD1O75717 1129 aaPredicted RBP13.47□□□□□ -0.25
VTI1BP3-201ENST00000550220 HNRNPUQ00839 825 aaKnown RBP eCLIP13.47□□□□□ -0.25
VTI1BP3-201ENST00000550220 MLLT1Q03111 559 aaPredicted RBP13.47□□□□□ -0.25
VTI1BP3-201ENST00000550220 MVPQ14764 893 aaKnown RBP13.47□□□□□ -0.25
VTI1BP3-201ENST00000550220 SPTY2D1Q68D10 685 aaPredicted RBP13.47□□□□□ -0.25
VTI1BP3-201ENST00000550220 CCDC102BQ68D86 513 aa13.47□□□□□ -0.25
VTI1BP3-201ENST00000550220 PA2G4Q9UQ80 394 aaKnown RBP13.47□□□□□ -0.25
VTI1BP3-201ENST00000550220 AKAP11Q9UKA4 1901 aa13.47□□□□□ -0.25
VTI1BP3-201ENST00000550220 SSC5DA1L4H1 1573 aa13.46□□□□□ -0.25
VTI1BP3-201ENST00000550220 A0A1B0GUL6 1792 aa13.46□□□□□ -0.25
VTI1BP3-201ENST00000550220 BCAR3O75815 825 aa13.46□□□□□ -0.25
VTI1BP3-201ENST00000550220 GTF2A2P52657 109 aa13.46□□□□□ -0.25
VTI1BP3-201ENST00000550220 G3BP1Q13283 466 aaKnown RBP eCLIP13.46□□□□□ -0.25
VTI1BP3-201ENST00000550220 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.46□□□□□ -0.25
VTI1BP3-201ENST00000550220 MIER1Q8N108 512 aa13.46□□□□□ -0.25
VTI1BP3-201ENST00000550220 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.46□□□□□ -0.25
VTI1BP3-201ENST00000550220 FAM151AQ8WW52 585 aa13.46□□□□□ -0.25
VTI1BP3-201ENST00000550220 OPTNQ96CV9 577 aa13.46□□□□□ -0.25
VTI1BP3-201ENST00000550220 ELP3Q9H9T3 547 aa13.46□□□□□ -0.25
VTI1BP3-201ENST00000550220 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.46□□□□□ -0.25
VTI1BP3-201ENST00000550220 PHKA1P46020 1223 aa13.45□□□□□ -0.26
VTI1BP3-201ENST00000550220 TIMM10P62072 90 aa13.45□□□□□ -0.26
VTI1BP3-201ENST00000550220 VGLL4Q14135 290 aa13.45□□□□□ -0.26
VTI1BP3-201ENST00000550220 ARHGEF6Q15052 776 aa13.45□□□□□ -0.26
VTI1BP3-201ENST00000550220 ZNF341Q9BYN7 854 aa13.45□□□□□ -0.26
VTI1BP3-201ENST00000550220 DAGLAQ9Y4D2 1042 aa13.45□□□□□ -0.26
VTI1BP3-201ENST00000550220 RPAP1Q9BWH6 1393 aaPredicted RBP13.45□□□□□ -0.26
VTI1BP3-201ENST00000550220 A0A1B0GUL7 405 aa13.44□□□□□ -0.26
VTI1BP3-201ENST00000550220 PRDX5P30044 214 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms