RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 TEPSINQ96N21 525 aa16.18■□□□□ 0.18
PTCH1-218ENST00000548945 BICC1Q9H694 974 aaKnown RBP16.18■□□□□ 0.18
PTCH1-218ENST00000548945 TDRD3Q9H7E2 651 aaKnown RBP16.18■□□□□ 0.18
PTCH1-218ENST00000548945 MKI67P46013 3256 aaKnown RBP16.18■□□□□ 0.18
PTCH1-218ENST00000548945 KIF16BQ96L93 1317 aa16.18■□□□□ 0.18
PTCH1-218ENST00000548945 MYH13Q9UKX3 1938 aa16.17■□□□□ 0.18
PTCH1-218ENST00000548945 GJA5P36382 358 aa16.17■□□□□ 0.18
PTCH1-218ENST00000548945 CRKP46108 304 aa16.17■□□□□ 0.18
PTCH1-218ENST00000548945 CAVIN4Q5BKX8 364 aa16.17■□□□□ 0.18
PTCH1-218ENST00000548945 PRPF38BQ5VTL8 546 aaKnown RBP16.17■□□□□ 0.18
PTCH1-218ENST00000548945 MRPL50Q8N5N7 158 aaKnown RBP16.17■□□□□ 0.18
PTCH1-218ENST00000548945 ANKRD44Q8N8A2 993 aa16.17■□□□□ 0.18
PTCH1-218ENST00000548945 VGLL2Q8N8G2 317 aa16.17■□□□□ 0.18
PTCH1-218ENST00000548945 ERO1AQ96HE7 468 aa16.17■□□□□ 0.18
PTCH1-218ENST00000548945 MRIQ9BWK5 157 aa16.17■□□□□ 0.18
PTCH1-218ENST00000548945 RBBP6Q7Z6E9 1792 aaKnown RBP16.17■□□□□ 0.18
PTCH1-218ENST00000548945 PDE8BO95263 885 aa16.16■□□□□ 0.18
PTCH1-218ENST00000548945 METTL24Q5JXM2 366 aa16.16■□□□□ 0.18
PTCH1-218ENST00000548945 OTOP1Q7RTM1 612 aa16.16■□□□□ 0.18
PTCH1-218ENST00000548945 SUGT1Q9Y2Z0 365 aa16.16■□□□□ 0.18
PTCH1-218ENST00000548945 TRIM17Q9Y577 477 aa16.16■□□□□ 0.18
PTCH1-218ENST00000548945 CRHR2Q13324 411 aa16.15■□□□□ 0.18
PTCH1-218ENST00000548945 LRRC24Q50LG9 513 aa16.15■□□□□ 0.18
PTCH1-218ENST00000548945 INTS3Q68E01 1043 aaKnown RBP16.15■□□□□ 0.18
PTCH1-218ENST00000548945 OPTNQ96CV9 577 aa16.15■□□□□ 0.18
PTCH1-218ENST00000548945 E9PSI1 815 aa16.14■□□□□ 0.17
PTCH1-218ENST00000548945 FRAT2O75474 233 aaPredicted RBP16.14■□□□□ 0.17
PTCH1-218ENST00000548945 MAP3K9P80192 1104 aa16.14■□□□□ 0.17
PTCH1-218ENST00000548945 FKBP1CQ5VVH2 108 aa16.14■□□□□ 0.17
PTCH1-218ENST00000548945 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.14■□□□□ 0.17
PTCH1-218ENST00000548945 TEKT1Q969V4 418 aa16.14■□□□□ 0.17
PTCH1-218ENST00000548945 MS4A4AQ96JQ5 239 aa16.14■□□□□ 0.17
PTCH1-218ENST00000548945 PTPN18Q99952 460 aa16.14■□□□□ 0.17
PTCH1-218ENST00000548945 TMEM39BQ9GZU3 492 aa16.14■□□□□ 0.17
PTCH1-218ENST00000548945 ELP3Q9H9T3 547 aa16.14■□□□□ 0.17
PTCH1-218ENST00000548945 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.14■□□□□ 0.17
PTCH1-218ENST00000548945 MAST3O60307 1309 aa16.14■□□□□ 0.17
PTCH1-218ENST00000548945 BRCA2P51587 3418 aa16.13■□□□□ 0.17
PTCH1-218ENST00000548945 TCP10L2B9ZVM9 353 aa16.13■□□□□ 0.17
PTCH1-218ENST00000548945 GTF2A2P52657 109 aa16.13■□□□□ 0.17
PTCH1-218ENST00000548945 FAM83AQ86UY5 434 aa16.13■□□□□ 0.17
PTCH1-218ENST00000548945 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.13■□□□□ 0.17
PTCH1-218ENST00000548945 HOOK2Q96ED9 719 aa16.13■□□□□ 0.17
PTCH1-218ENST00000548945 ZDHHC15Q96MV8 337 aa16.13■□□□□ 0.17
PTCH1-218ENST00000548945 USP44Q9H0E7 712 aa16.13■□□□□ 0.17
PTCH1-218ENST00000548945 CSADQ9Y600 493 aa16.13■□□□□ 0.17
PTCH1-218ENST00000548945 IFIT1P09914 478 aaKnown RBP16.12■□□□□ 0.17
PTCH1-218ENST00000548945 SP3Q02447 781 aa16.12■□□□□ 0.17
PTCH1-218ENST00000548945 CHAF1AQ13111 956 aaPredicted RBP16.12■□□□□ 0.17
PTCH1-218ENST00000548945 VGLL4Q14135 290 aa16.12■□□□□ 0.17
PTCH1-218ENST00000548945 PUM3Q15397 648 aaKnown RBP16.12■□□□□ 0.17
PTCH1-218ENST00000548945 GRIK5Q16478 980 aa16.12■□□□□ 0.17
PTCH1-218ENST00000548945 CDAN1Q8IWY9 1227 aa16.12■□□□□ 0.17
PTCH1-218ENST00000548945 SSH1Q8WYL5 1049 aa16.12■□□□□ 0.17
PTCH1-218ENST00000548945 TMOD2Q9NZR1 351 aa16.12■□□□□ 0.17
PTCH1-218ENST00000548945 PCDH10Q9P2E7 1040 aa16.12■□□□□ 0.17
PTCH1-218ENST00000548945 IQSEC3Q9UPP2 1182 aaPredicted RBP16.12■□□□□ 0.17
PTCH1-218ENST00000548945 PTPN22Q9Y2R2 807 aa16.12■□□□□ 0.17
PTCH1-218ENST00000548945 FGFR2P21802 821 aa16.11■□□□□ 0.17
PTCH1-218ENST00000548945 BCAMP50895 628 aa16.11■□□□□ 0.17
PTCH1-218ENST00000548945 ARHGEF6Q15052 776 aa16.11■□□□□ 0.17
PTCH1-218ENST00000548945 ALDH1L2Q3SY69 923 aa16.11■□□□□ 0.17
PTCH1-218ENST00000548945 HHIPL2Q6UWX4 724 aa16.11■□□□□ 0.17
PTCH1-218ENST00000548945 CD99L2Q8TCZ2 262 aa16.11■□□□□ 0.17
PTCH1-218ENST00000548945 BRI3BPQ8WY22 251 aa16.11■□□□□ 0.17
PTCH1-218ENST00000548945 EFCC1Q9HA90 598 aa16.11■□□□□ 0.17
PTCH1-218ENST00000548945 RPAP1Q9BWH6 1393 aaPredicted RBP16.11■□□□□ 0.17
PTCH1-218ENST00000548945 SPDYE5A6NIY4 337 aa16.1■□□□□ 0.17
PTCH1-218ENST00000548945 APOBEC3HQ6NTF7 200 aaKnown RBP16.1■□□□□ 0.17
PTCH1-218ENST00000548945 KLHDC4Q8TBB5 520 aa16.1■□□□□ 0.17
PTCH1-218ENST00000548945 ARMC5Q96C12 935 aa16.1■□□□□ 0.17
PTCH1-218ENST00000548945 ZFYVE28Q9HCC9 887 aa16.1■□□□□ 0.17
PTCH1-218ENST00000548945 ZCCHC17Q9NP64 241 aaKnown RBP16.1■□□□□ 0.17
PTCH1-218ENST00000548945 FBXO3Q9UK99 471 aa16.1■□□□□ 0.17
PTCH1-218ENST00000548945 AK9Q5TCS8 1911 aa16.09■□□□□ 0.17
PTCH1-218ENST00000548945 CEP290O15078 2479 aa16.09■□□□□ 0.17
PTCH1-218ENST00000548945 CCL15-CCL14A0A0B4J2E2 113 aa16.09■□□□□ 0.17
PTCH1-218ENST00000548945 EYA2O00167 538 aa16.09■□□□□ 0.17
PTCH1-218ENST00000548945 WDHD1O75717 1129 aaPredicted RBP16.09■□□□□ 0.17
PTCH1-218ENST00000548945 RFX5P48382 616 aaPredicted RBP16.09■□□□□ 0.17
PTCH1-218ENST00000548945 SLFN5Q08AF3 891 aa16.09■□□□□ 0.17
PTCH1-218ENST00000548945 TAF1CQ15572 869 aaPredicted RBP16.09■□□□□ 0.17
PTCH1-218ENST00000548945 CCL15Q16663 113 aa16.09■□□□□ 0.17
PTCH1-218ENST00000548945 WDR66Q8TBY9 1149 aa16.09■□□□□ 0.17
PTCH1-218ENST00000548945 LPIN2Q92539 896 aa16.09■□□□□ 0.17
PTCH1-218ENST00000548945 SLC5A1P13866 664 aa16.08■□□□□ 0.16
PTCH1-218ENST00000548945 DCAF15Q66K64 600 aa16.08■□□□□ 0.16
PTCH1-218ENST00000548945 ERO1BQ86YB8 467 aa16.08■□□□□ 0.16
PTCH1-218ENST00000548945 CNKSR2Q8WXI2 1034 aa16.08■□□□□ 0.16
PTCH1-218ENST00000548945 OTUD5Q96G74 571 aa16.08■□□□□ 0.16
PTCH1-218ENST00000548945 SNCAIPQ9Y6H5 919 aa16.08■□□□□ 0.16
PTCH1-218ENST00000548945 CETPP11597 493 aa16.07■□□□□ 0.16
PTCH1-218ENST00000548945 CACNB3P54284 484 aa16.07■□□□□ 0.16
PTCH1-218ENST00000548945 WRNIP1Q96S55 665 aa16.07■□□□□ 0.16
PTCH1-218ENST00000548945 ZBTB22O15209 634 aa16.06■□□□□ 0.16
PTCH1-218ENST00000548945 CIAO1O76071 339 aa16.06■□□□□ 0.16
PTCH1-218ENST00000548945 CT47B1P0C2W7 299 aaPredicted RBP16.06■□□□□ 0.16
PTCH1-218ENST00000548945 PPIL2Q13356 520 aa16.06■□□□□ 0.16
PTCH1-218ENST00000548945 SNAPC2Q13487 334 aa16.06■□□□□ 0.16
PTCH1-218ENST00000548945 ATG9AQ7Z3C6 839 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms