RNA–Protein interactions for RNA: ENST00000548420.1

PTCH1-217, Transcript of patched 1, humanhuman

TSL 5

Gene PTCH1, Length 553 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-217ENST00000548420 TRIM35Q9UPQ4 493 aa18.12■□□□□ 0.49
PTCH1-217ENST00000548420 ADGRA2Q96PE1 1338 aa18.12■□□□□ 0.49
PTCH1-217ENST00000548420 CDH23Q9H251 3354 aa18.12■□□□□ 0.49
PTCH1-217ENST00000548420 CCDC85AQ96PX6 553 aaPredicted RBP18.11■□□□□ 0.49
PTCH1-217ENST00000548420 ZCCHC17Q9NP64 241 aaKnown RBP18.11■□□□□ 0.49
PTCH1-217ENST00000548420 ELNP15502 786 aa18.1■□□□□ 0.49
PTCH1-217ENST00000548420 SLAIN1Q8ND83 568 aa18.1■□□□□ 0.49
PTCH1-217ENST00000548420 COA1Q9GZY4 146 aa18.1■□□□□ 0.49
PTCH1-217ENST00000548420 VEZTQ9HBM0 779 aa18.1■□□□□ 0.49
PTCH1-217ENST00000548420 MGAMO43451 1857 aa18.09■□□□□ 0.49
PTCH1-217ENST00000548420 INHAP05111 366 aa18.09■□□□□ 0.49
PTCH1-217ENST00000548420 KLRK1P26718 216 aa18.09■□□□□ 0.49
PTCH1-217ENST00000548420 GTF2IP78347 998 aa18.09■□□□□ 0.49
PTCH1-217ENST00000548420 MAP3K9P80192 1104 aa18.09■□□□□ 0.49
PTCH1-217ENST00000548420 HELBQ8NG08 1087 aaPredicted RBP18.09■□□□□ 0.49
PTCH1-217ENST00000548420 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.09■□□□□ 0.49
PTCH1-217ENST00000548420 TEPSINQ96N21 525 aa18.09■□□□□ 0.49
PTCH1-217ENST00000548420 SPDYE2BA6NHP3 402 aa18.08■□□□□ 0.48
PTCH1-217ENST00000548420 SPDYE6P0CI01 402 aa18.08■□□□□ 0.48
PTCH1-217ENST00000548420 CETPP11597 493 aa18.08■□□□□ 0.48
PTCH1-217ENST00000548420 CFAP100Q494V2 611 aa18.08■□□□□ 0.48
PTCH1-217ENST00000548420 MYLIPQ8WY64 445 aa18.08■□□□□ 0.48
PTCH1-217ENST00000548420 NCOR1O75376 2440 aa18.07■□□□□ 0.48
PTCH1-217ENST00000548420 SPDYE5A6NIY4 337 aa18.07■□□□□ 0.48
PTCH1-217ENST00000548420 IRF6O14896 467 aa18.07■□□□□ 0.48
PTCH1-217ENST00000548420 ADCY3O60266 1144 aa18.07■□□□□ 0.48
PTCH1-217ENST00000548420 WDHD1O75717 1129 aaPredicted RBP18.07■□□□□ 0.48
PTCH1-217ENST00000548420 NEUROD2Q15784 382 aa18.07■□□□□ 0.48
PTCH1-217ENST00000548420 ZNF697Q5TEC3 545 aa18.07■□□□□ 0.48
PTCH1-217ENST00000548420 SEMA6BQ9H3T3 888 aa18.07■□□□□ 0.48
PTCH1-217ENST00000548420 MINPP1Q9UNW1 487 aa18.07■□□□□ 0.48
PTCH1-217ENST00000548420 SYNGAP1Q96PV0 1343 aa18.06■□□□□ 0.48
PTCH1-217ENST00000548420 CHL1O00533 1208 aa18.06■□□□□ 0.48
PTCH1-217ENST00000548420 APAF1O14727 1248 aa18.06■□□□□ 0.48
PTCH1-217ENST00000548420 TJAP1Q5JTD0 557 aa18.06■□□□□ 0.48
PTCH1-217ENST00000548420 PLBD2Q8NHP8 589 aa18.06■□□□□ 0.48
PTCH1-217ENST00000548420 SNCAIPQ9Y6H5 919 aa18.06■□□□□ 0.48
PTCH1-217ENST00000548420 FAM205AQ6ZU69 1335 aa18.05■□□□□ 0.48
PTCH1-217ENST00000548420 CAPN2P17655 700 aa18.05■□□□□ 0.48
PTCH1-217ENST00000548420 CCT4P50991 539 aaKnown RBP18.05■□□□□ 0.48
PTCH1-217ENST00000548420 MDM2Q00987 491 aaPredicted RBP18.05■□□□□ 0.48
PTCH1-217ENST00000548420 ANKRD18AQ8IVF6 992 aa18.05■□□□□ 0.48
PTCH1-217ENST00000548420 JARID2Q92833 1246 aaPredicted RBP18.05■□□□□ 0.48
PTCH1-217ENST00000548420 DDX60LQ5H9U9 1706 aaKnown RBP18.04■□□□□ 0.48
PTCH1-217ENST00000548420 F8W031 263 aaPredicted RBP18.04■□□□□ 0.48
PTCH1-217ENST00000548420 USP38Q8NB14 1042 aa18.04■□□□□ 0.48
PTCH1-217ENST00000548420 MRS2Q9HD23 443 aa18.04■□□□□ 0.48
PTCH1-217ENST00000548420 TSPYL4Q9UJ04 414 aa18.04■□□□□ 0.48
PTCH1-217ENST00000548420 PIEZO1Q92508 2521 aa18.04■□□□□ 0.48
PTCH1-217ENST00000548420 DOCK3Q8IZD9 2030 aa18.03■□□□□ 0.48
PTCH1-217ENST00000548420 SPEF2Q9C093 1822 aa18.03■□□□□ 0.48
PTCH1-217ENST00000548420 FLT3LGP49771 235 aa18.03■□□□□ 0.48
PTCH1-217ENST00000548420 TRIM28Q13263 835 aaKnown RBP18.03■□□□□ 0.48
PTCH1-217ENST00000548420 CCDC152Q4G0S7 254 aa18.03■□□□□ 0.48
PTCH1-217ENST00000548420 TTYH1Q9H313 450 aaPredicted RBP18.03■□□□□ 0.48
PTCH1-217ENST00000548420 BDP1A6H8Y1 2624 aa18.02■□□□□ 0.48
PTCH1-217ENST00000548420 BCRP11274 1271 aa18.02■□□□□ 0.48
PTCH1-217ENST00000548420 SNAPC2Q13487 334 aa18.02■□□□□ 0.48
PTCH1-217ENST00000548420 NCBP3Q53F19 620 aaKnown RBP18.02■□□□□ 0.48
PTCH1-217ENST00000548420 ZBTB38Q8NAP3 1195 aaPredicted RBP18.02■□□□□ 0.48
PTCH1-217ENST00000548420 SNX27Q96L92 541 aa18.02■□□□□ 0.48
PTCH1-217ENST00000548420 CSADQ9Y600 493 aa18.02■□□□□ 0.48
PTCH1-217ENST00000548420 PDHXO00330 501 aa18.01■□□□□ 0.47
PTCH1-217ENST00000548420 MYO1BO43795 1136 aa18.01■□□□□ 0.47
PTCH1-217ENST00000548420 ZNF853P0CG23 659 aa18.01■□□□□ 0.47
PTCH1-217ENST00000548420 FCGRTP55899 365 aa18.01■□□□□ 0.47
PTCH1-217ENST00000548420 MOGSQ13724 837 aa18.01■□□□□ 0.47
PTCH1-217ENST00000548420 ERO1BQ86YB8 467 aa18.01■□□□□ 0.47
PTCH1-217ENST00000548420 ANKLE1Q8NAG6 615 aa18.01■□□□□ 0.47
PTCH1-217ENST00000548420 PXYLP1Q8TE99 480 aa18.01■□□□□ 0.47
PTCH1-217ENST00000548420 NBPF3Q9H094 633 aa18.01■□□□□ 0.47
PTCH1-217ENST00000548420 PFASO15067 1338 aa18■□□□□ 0.47
PTCH1-217ENST00000548420 ANKRD23Q86SG2 305 aa18■□□□□ 0.47
PTCH1-217ENST00000548420 ZKSCAN4Q969J2 545 aaPredicted RBP18■□□□□ 0.47
PTCH1-217ENST00000548420 TMEM39BQ9GZU3 492 aa18■□□□□ 0.47
PTCH1-217ENST00000548420 XRN2Q9H0D6 950 aaKnown RBP eCLIP18■□□□□ 0.47
PTCH1-217ENST00000548420 CHPF2Q9P2E5 772 aa18■□□□□ 0.47
PTCH1-217ENST00000548420 ZNF70Q9UC06 446 aaPredicted RBP18■□□□□ 0.47
PTCH1-217ENST00000548420 PDE8AO60658 829 aa17.99■□□□□ 0.47
PTCH1-217ENST00000548420 CCDC27Q2M243 656 aa17.99■□□□□ 0.47
PTCH1-217ENST00000548420 KRT24Q2M2I5 525 aa17.99■□□□□ 0.47
PTCH1-217ENST00000548420 SPDYE2Q495Y8 402 aa17.99■□□□□ 0.47
PTCH1-217ENST00000548420 C11orf49Q9H6J7 331 aa17.99■□□□□ 0.47
PTCH1-217ENST00000548420 CD209Q9NNX6 404 aa17.99■□□□□ 0.47
PTCH1-217ENST00000548420 BSDC1Q9NW68 430 aaPredicted RBP17.99■□□□□ 0.47
PTCH1-217ENST00000548420 ARAP2Q8WZ64 1704 aa17.98■□□□□ 0.47
PTCH1-217ENST00000548420 PPIL2Q13356 520 aa17.98■□□□□ 0.47
PTCH1-217ENST00000548420 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.98■□□□□ 0.47
PTCH1-217ENST00000548420 FOSL2P15408 326 aa17.97■□□□□ 0.47
PTCH1-217ENST00000548420 IRF5Q13568 498 aa17.97■□□□□ 0.47
PTCH1-217ENST00000548420 TDRD3Q9H7E2 651 aaKnown RBP17.97■□□□□ 0.47
PTCH1-217ENST00000548420 CYP2C8P10632 490 aa17.96■□□□□ 0.47
PTCH1-217ENST00000548420 CALD1Q05682 793 aaKnown RBP17.96■□□□□ 0.47
PTCH1-217ENST00000548420 IFT57Q9NWB7 429 aa17.96■□□□□ 0.47
PTCH1-217ENST00000548420 LEMD3Q9Y2U8 911 aa17.96■□□□□ 0.47
PTCH1-217ENST00000548420 TCP10L2B9ZVM9 353 aa17.95■□□□□ 0.46
PTCH1-217ENST00000548420 MBIPQ9NS73 344 aa17.95■□□□□ 0.46
PTCH1-217ENST00000548420 JAG2Q9Y219 1238 aa17.95■□□□□ 0.46
PTCH1-217ENST00000548420 LAS1LQ9Y4W2 734 aaKnown RBP17.95■□□□□ 0.46
PTCH1-217ENST00000548420 SNAP23O00161 211 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms