RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 SRGNP10124 158 aa15.91■□□□□ 0.14
PTCH1-215ENST00000547672 SKOR2Q2VWA4 1001 aaPredicted RBP15.91■□□□□ 0.14
PTCH1-215ENST00000547672 GRIPAP1Q4V328 841 aa15.91■□□□□ 0.14
PTCH1-215ENST00000547672 TDRD7Q8NHU6 1098 aaKnown RBP15.91■□□□□ 0.14
PTCH1-215ENST00000547672 TBC1D22AQ8WUA7 517 aa15.91■□□□□ 0.14
PTCH1-215ENST00000547672 NOL10Q9BSC4 688 aaKnown RBP15.91■□□□□ 0.14
PTCH1-215ENST00000547672 NAPBQ9H115 298 aa15.91■□□□□ 0.14
PTCH1-215ENST00000547672 RNF41Q9H4P4 317 aaPredicted RBP15.91■□□□□ 0.14
PTCH1-215ENST00000547672 ATP6V1DQ9Y5K8 247 aa15.91■□□□□ 0.14
PTCH1-215ENST00000547672 DOCK2Q92608 1830 aa15.91■□□□□ 0.14
PTCH1-215ENST00000547672 WDR33Q9C0J8 1336 aaKnown RBP15.91■□□□□ 0.14
PTCH1-215ENST00000547672 UFL1O94874 794 aa15.9■□□□□ 0.14
PTCH1-215ENST00000547672 MBD4O95243 580 aa15.9■□□□□ 0.14
PTCH1-215ENST00000547672 PCP11498 1178 aaKnown RBP15.9■□□□□ 0.14
PTCH1-215ENST00000547672 MCM4P33991 863 aa15.9■□□□□ 0.14
PTCH1-215ENST00000547672 EN1Q05925 392 aaPredicted RBP15.9■□□□□ 0.14
PTCH1-215ENST00000547672 EZH2Q15910 746 aaKnown RBP15.9■□□□□ 0.14
PTCH1-215ENST00000547672 STYK1Q6J9G0 422 aa15.9■□□□□ 0.14
PTCH1-215ENST00000547672 EYA3Q99504 573 aa15.9■□□□□ 0.14
PTCH1-215ENST00000547672 TAF1P21675 1872 aa15.9■□□□□ 0.14
PTCH1-215ENST00000547672 NRXN2Q9P2S2 1712 aa15.89■□□□□ 0.13
PTCH1-215ENST00000547672 DHX16O60231 1041 aaKnown RBP15.89■□□□□ 0.13
PTCH1-215ENST00000547672 GPSM2P81274 684 aa15.89■□□□□ 0.13
PTCH1-215ENST00000547672 EXOSC10Q01780 885 aaKnown RBP15.89■□□□□ 0.13
PTCH1-215ENST00000547672 CC2D2BQ6DHV5 1058 aa15.89■□□□□ 0.13
PTCH1-215ENST00000547672 NOL8Q76FK4 1167 aaKnown RBP15.89■□□□□ 0.13
PTCH1-215ENST00000547672 IFNL3Q8IZI9 196 aa15.89■□□□□ 0.13
PTCH1-215ENST00000547672 TNPO1Q92973 898 aaKnown RBP15.89■□□□□ 0.13
PTCH1-215ENST00000547672 CNKSR1Q969H4 720 aa15.89■□□□□ 0.13
PTCH1-215ENST00000547672 ZNF274Q96GC6 653 aaPredicted RBP15.89■□□□□ 0.13
PTCH1-215ENST00000547672 LLPHQ9BRT6 129 aaKnown RBP15.89■□□□□ 0.13
PTCH1-215ENST00000547672 MTA3Q9BTC8 594 aa15.89■□□□□ 0.13
PTCH1-215ENST00000547672 KRT23Q9C075 422 aa15.89■□□□□ 0.13
PTCH1-215ENST00000547672 SLC4A4Q9Y6R1 1079 aa15.89■□□□□ 0.13
PTCH1-215ENST00000547672 TNRC6CQ9HCJ0 1690 aaKnown RBP15.89■□□□□ 0.13
PTCH1-215ENST00000547672 QSER1Q2KHR3 1735 aa15.88■□□□□ 0.13
PTCH1-215ENST00000547672 C6orf229H3BNL8 230 aa15.88■□□□□ 0.13
PTCH1-215ENST00000547672 BAG3O95817 575 aa15.88■□□□□ 0.13
PTCH1-215ENST00000547672 CHGBP05060 677 aa15.88■□□□□ 0.13
PTCH1-215ENST00000547672 LDHBP07195 334 aaKnown RBP15.88■□□□□ 0.13
PTCH1-215ENST00000547672 IL1R1P14778 569 aa15.88■□□□□ 0.13
PTCH1-215ENST00000547672 TDO2P48775 406 aa15.88■□□□□ 0.13
PTCH1-215ENST00000547672 SLFNL1Q499Z3 407 aa15.88■□□□□ 0.13
PTCH1-215ENST00000547672 Q6ZUG5 572 aa15.88■□□□□ 0.13
PTCH1-215ENST00000547672 DZIP1Q86YF9 867 aaKnown RBP15.88■□□□□ 0.13
PTCH1-215ENST00000547672 AGXT2Q9BYV1 514 aa15.88■□□□□ 0.13
PTCH1-215ENST00000547672 CRNKL1Q9BZJ0 848 aaKnown RBP15.88■□□□□ 0.13
PTCH1-215ENST00000547672 IQSEC3Q9UPP2 1182 aaPredicted RBP15.88■□□□□ 0.13
PTCH1-215ENST00000547672 SUGT1Q9Y2Z0 365 aa15.88■□□□□ 0.13
PTCH1-215ENST00000547672 DUOX1Q9NRD9 1551 aa15.87■□□□□ 0.13
PTCH1-215ENST00000547672 SLC3A2P08195 630 aaKnown RBP15.87■□□□□ 0.13
PTCH1-215ENST00000547672 CPA1P15085 419 aa15.87■□□□□ 0.13
PTCH1-215ENST00000547672 MPNDQ8N594 471 aa15.87■□□□□ 0.13
PTCH1-215ENST00000547672 TBC1D16Q8TBP0 767 aa15.87■□□□□ 0.13
PTCH1-215ENST00000547672 TMEM87BQ96K49 555 aa15.87■□□□□ 0.13
PTCH1-215ENST00000547672 ZC3H12CQ9C0D7 883 aaKnown RBP15.87■□□□□ 0.13
PTCH1-215ENST00000547672 COA1Q9GZY4 146 aa15.87■□□□□ 0.13
PTCH1-215ENST00000547672 ATP8A2Q9NTI2 1148 aa15.87■□□□□ 0.13
PTCH1-215ENST00000547672 IRS2Q9Y4H2 1338 aa15.87■□□□□ 0.13
PTCH1-215ENST00000547672 G3V3G9 751 aa15.86■□□□□ 0.13
PTCH1-215ENST00000547672 PLCG2P16885 1265 aa15.86■□□□□ 0.13
PTCH1-215ENST00000547672 CHAF1AQ13111 956 aaPredicted RBP15.86■□□□□ 0.13
PTCH1-215ENST00000547672 TOB2Q14106 344 aaPredicted RBP15.86■□□□□ 0.13
PTCH1-215ENST00000547672 SART3Q15020 963 aaKnown RBP15.86■□□□□ 0.13
PTCH1-215ENST00000547672 DCAF8Q5TAQ9 597 aa15.86■□□□□ 0.13
PTCH1-215ENST00000547672 MFSD6Q6ZSS7 791 aa15.86■□□□□ 0.13
PTCH1-215ENST00000547672 C2CD5Q86YS7 1000 aa15.86■□□□□ 0.13
PTCH1-215ENST00000547672 TMTC2Q8N394 836 aa15.86■□□□□ 0.13
PTCH1-215ENST00000547672 NSUN4Q96CB9 384 aaKnown RBP15.86■□□□□ 0.13
PTCH1-215ENST00000547672 ARMT1Q9H993 441 aa15.86■□□□□ 0.13
PTCH1-215ENST00000547672 CD209Q9NNX6 404 aa15.86■□□□□ 0.13
PTCH1-215ENST00000547672 TPCN1Q9ULQ1 816 aa15.86■□□□□ 0.13
PTCH1-215ENST00000547672 GSG1L2A8MUP6 293 aa15.85■□□□□ 0.13
PTCH1-215ENST00000547672 EVCP57679 992 aa15.85■□□□□ 0.13
PTCH1-215ENST00000547672 HMGN5P82970 282 aaKnown RBP15.85■□□□□ 0.13
PTCH1-215ENST00000547672 MECOMQ03112 1051 aa15.85■□□□□ 0.13
PTCH1-215ENST00000547672 ME3Q16798 604 aa15.85■□□□□ 0.13
PTCH1-215ENST00000547672 TTLL5Q6EMB2 1281 aa15.85■□□□□ 0.13
PTCH1-215ENST00000547672 DPP8Q6V1X1 898 aaPredicted RBP15.85■□□□□ 0.13
PTCH1-215ENST00000547672 CCDC83Q8IWF9 413 aa15.85■□□□□ 0.13
PTCH1-215ENST00000547672 AMOTL1Q8IY63 956 aa15.85■□□□□ 0.13
PTCH1-215ENST00000547672 ANAPC4Q9UJX5 808 aa15.85■□□□□ 0.13
PTCH1-215ENST00000547672 MYH13Q9UKX3 1938 aa15.85■□□□□ 0.13
PTCH1-215ENST00000547672 PFKFB2O60825 505 aa15.84■□□□□ 0.13
PTCH1-215ENST00000547672 BRD1O95696 1058 aa15.84■□□□□ 0.13
PTCH1-215ENST00000547672 AKNAD1Q5T1N1 836 aa15.84■□□□□ 0.13
PTCH1-215ENST00000547672 STOX1Q6ZVD7 989 aa15.84■□□□□ 0.13
PTCH1-215ENST00000547672 SUPT20HQ8NEM7 779 aa15.84■□□□□ 0.13
PTCH1-215ENST00000547672 BRF1Q92994 677 aa15.84■□□□□ 0.13
PTCH1-215ENST00000547672 ZNF622Q969S3 477 aaKnown RBP eCLIP15.84■□□□□ 0.13
PTCH1-215ENST00000547672 CCDC88AQ3V6T2 1871 aa15.84■□□□□ 0.13
PTCH1-215ENST00000547672 FOXP2O15409 715 aa15.83■□□□□ 0.12
PTCH1-215ENST00000547672 PRC1O43663 620 aa15.83■□□□□ 0.12
PTCH1-215ENST00000547672 HAND2P61296 217 aa15.83■□□□□ 0.12
PTCH1-215ENST00000547672 CSPP1Q1MSJ5 1256 aa15.83■□□□□ 0.12
PTCH1-215ENST00000547672 CPLX2Q6PUV4 134 aaKnown RBP15.83■□□□□ 0.12
PTCH1-215ENST00000547672 SYNE3Q6ZMZ3 975 aa15.83■□□□□ 0.12
PTCH1-215ENST00000547672 LCORLQ8N3X6 602 aa15.83■□□□□ 0.12
PTCH1-215ENST00000547672 RGS22Q8NE09 1264 aa15.83■□□□□ 0.12
PTCH1-215ENST00000547672 STAG1Q8WVM7 1258 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms