RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 DZIP1LQ8IYY4 767 aaKnown RBP16.34■□□□□ 0.21
USP28-212ENST00000544750 ZFYVE28Q9HCC9 887 aa16.34■□□□□ 0.21
USP28-212ENST00000544750 IL16Q14005 1332 aa16.34■□□□□ 0.21
USP28-212ENST00000544750 ZNF316A6NFI3 1004 aaPredicted RBP16.33■□□□□ 0.2
USP28-212ENST00000544750 GTF2A2P52657 109 aa16.33■□□□□ 0.2
USP28-212ENST00000544750 MAP3K9P80192 1104 aa16.33■□□□□ 0.2
USP28-212ENST00000544750 SLC9C1Q4G0N8 1177 aa16.33■□□□□ 0.2
USP28-212ENST00000544750 LMBR1LQ6UX01 489 aa16.33■□□□□ 0.2
USP28-212ENST00000544750 NBPF11Q86T75 865 aa16.33■□□□□ 0.2
USP28-212ENST00000544750 FAM84BQ96KN1 310 aaPredicted RBP16.33■□□□□ 0.2
USP28-212ENST00000544750 TMEM39BQ9GZU3 492 aa16.33■□□□□ 0.2
USP28-212ENST00000544750 TTF2Q9UNY4 1162 aaKnown RBP16.33■□□□□ 0.2
USP28-212ENST00000544750 VAMP4O75379 141 aa16.32■□□□□ 0.2
USP28-212ENST00000544750 UBE4AQ14139 1066 aa16.32■□□□□ 0.2
USP28-212ENST00000544750 ARHGEF6Q15052 776 aa16.32■□□□□ 0.2
USP28-212ENST00000544750 LDHAL6AQ6ZMR3 332 aa16.32■□□□□ 0.2
USP28-212ENST00000544750 OTUD5Q96G74 571 aa16.32■□□□□ 0.2
USP28-212ENST00000544750 SPDYE5A6NIY4 337 aa16.31■□□□□ 0.2
USP28-212ENST00000544750 TCP10L2B9ZVM9 353 aa16.31■□□□□ 0.2
USP28-212ENST00000544750 F6X3S4 739 aa16.31■□□□□ 0.2
USP28-212ENST00000544750 GYG1P46976 350 aa16.31■□□□□ 0.2
USP28-212ENST00000544750 GRIK5Q16478 980 aa16.31■□□□□ 0.2
USP28-212ENST00000544750 NCBP3Q53F19 620 aaKnown RBP16.31■□□□□ 0.2
USP28-212ENST00000544750 ARHGAP39Q9C0H5 1083 aa16.31■□□□□ 0.2
USP28-212ENST00000544750 CHMP3Q9Y3E7 222 aa16.31■□□□□ 0.2
USP28-212ENST00000544750 MGAMO43451 1857 aa16.31■□□□□ 0.2
USP28-212ENST00000544750 FANCIQ9NVI1 1328 aa16.3■□□□□ 0.2
USP28-212ENST00000544750 MYH13Q9UKX3 1938 aa16.3■□□□□ 0.2
USP28-212ENST00000544750 PLIN1O60240 522 aa16.3■□□□□ 0.2
USP28-212ENST00000544750 TLR2O60603 784 aa16.3■□□□□ 0.2
USP28-212ENST00000544750 CRKP46108 304 aa16.3■□□□□ 0.2
USP28-212ENST00000544750 CCDC57Q2TAC2 916 aa16.3■□□□□ 0.2
USP28-212ENST00000544750 ZCCHC17Q9NP64 241 aaKnown RBP16.3■□□□□ 0.2
USP28-212ENST00000544750 SNCAIPQ9Y6H5 919 aa16.3■□□□□ 0.2
USP28-212ENST00000544750 RANBP2P49792 3224 aaKnown RBP16.29■□□□□ 0.2
USP28-212ENST00000544750 HIBADHP31937 336 aaKnown RBP16.29■□□□□ 0.2
USP28-212ENST00000544750 LACTBP83111 547 aaPredicted RBP16.29■□□□□ 0.2
USP28-212ENST00000544750 SLC4A8Q2Y0W8 1093 aa16.29■□□□□ 0.2
USP28-212ENST00000544750 CCDC184Q52MB2 194 aa16.29■□□□□ 0.2
USP28-212ENST00000544750 CNNM1Q9NRU3 951 aa16.29■□□□□ 0.2
USP28-212ENST00000544750 CSADQ9Y600 493 aa16.29■□□□□ 0.2
USP28-212ENST00000544750 BTBD19C9JJ37 291 aa16.28■□□□□ 0.2
USP28-212ENST00000544750 H0YGN5 161 aa16.28■□□□□ 0.2
USP28-212ENST00000544750 GRM8O00222 908 aa16.28■□□□□ 0.2
USP28-212ENST00000544750 TNNI2P48788 182 aa16.28■□□□□ 0.2
USP28-212ENST00000544750 HDLBPQ00341 1268 aaKnown RBP16.28■□□□□ 0.2
USP28-212ENST00000544750 FBXO33Q7Z6M2 555 aa16.28■□□□□ 0.2
USP28-212ENST00000544750 ERO1BQ86YB8 467 aa16.28■□□□□ 0.2
USP28-212ENST00000544750 SH3TC2Q8TF17 1288 aa16.28■□□□□ 0.2
USP28-212ENST00000544750 SHISA4Q96DD7 197 aa16.28■□□□□ 0.2
USP28-212ENST00000544750 PUS3Q9BZE2 481 aaKnown RBP16.28■□□□□ 0.2
USP28-212ENST00000544750 GNRH1P01148 92 aa16.27■□□□□ 0.2
USP28-212ENST00000544750 CTGFP29279 349 aa16.27■□□□□ 0.2
USP28-212ENST00000544750 KAZALD1Q96I82 304 aa16.27■□□□□ 0.2
USP28-212ENST00000544750 RIPOR2Q9Y4F9 1068 aa16.27■□□□□ 0.2
USP28-212ENST00000544750 AK9Q5TCS8 1911 aa16.27■□□□□ 0.19
USP28-212ENST00000544750 IRF6O14896 467 aa16.26■□□□□ 0.19
USP28-212ENST00000544750 CETPP11597 493 aa16.26■□□□□ 0.19
USP28-212ENST00000544750 PRMT2P55345 433 aa16.26■□□□□ 0.19
USP28-212ENST00000544750 TAF7LQ5H9L4 462 aa16.26■□□□□ 0.19
USP28-212ENST00000544750 C17orf99Q6UX52 265 aa16.26■□□□□ 0.19
USP28-212ENST00000544750 MRIQ9BWK5 157 aa16.26■□□□□ 0.19
USP28-212ENST00000544750 RPAP1Q9BWH6 1393 aaPredicted RBP16.26■□□□□ 0.19
USP28-212ENST00000544750 ADGRA2Q96PE1 1338 aa16.25■□□□□ 0.19
USP28-212ENST00000544750 MYCP01106 439 aaPredicted RBP16.25■□□□□ 0.19
USP28-212ENST00000544750 CACNB3P54284 484 aa16.25■□□□□ 0.19
USP28-212ENST00000544750 EXOSC9Q06265 439 aaKnown RBP16.25■□□□□ 0.19
USP28-212ENST00000544750 PPIL2Q13356 520 aa16.25■□□□□ 0.19
USP28-212ENST00000544750 MTFR1Q15390 333 aa16.25■□□□□ 0.19
USP28-212ENST00000544750 FKBP1CQ5VVH2 108 aa16.25■□□□□ 0.19
USP28-212ENST00000544750 FAM83AQ86UY5 434 aa16.25■□□□□ 0.19
USP28-212ENST00000544750 ZKSCAN4Q969J2 545 aaPredicted RBP16.25■□□□□ 0.19
USP28-212ENST00000544750 PTPRFP10586 1907 aa16.24■□□□□ 0.19
USP28-212ENST00000544750 ALDH1L1O75891 902 aa16.24■□□□□ 0.19
USP28-212ENST00000544750 SNAPC2Q13487 334 aa16.24■□□□□ 0.19
USP28-212ENST00000544750 KIF22Q14807 665 aa16.24■□□□□ 0.19
USP28-212ENST00000544750 APOBEC3HQ6NTF7 200 aaKnown RBP16.24■□□□□ 0.19
USP28-212ENST00000544750 UBE2Q1Q7Z7E8 422 aa16.24■□□□□ 0.19
USP28-212ENST00000544750 SUCLG2Q96I99 432 aa16.24■□□□□ 0.19
USP28-212ENST00000544750 ZDHHC15Q96MV8 337 aa16.24■□□□□ 0.19
USP28-212ENST00000544750 WRNIP1Q96S55 665 aa16.24■□□□□ 0.19
USP28-212ENST00000544750 IQSEC3Q9UPP2 1182 aaPredicted RBP16.24■□□□□ 0.19
USP28-212ENST00000544750 MROH5Q6ZUA9 1318 aa16.23■□□□□ 0.19
USP28-212ENST00000544750 DOCK3Q8IZD9 2030 aa16.23■□□□□ 0.19
USP28-212ENST00000544750 WDHD1O75717 1129 aaPredicted RBP16.23■□□□□ 0.19
USP28-212ENST00000544750 WDR63Q8IWG1 891 aa16.23■□□□□ 0.19
USP28-212ENST00000544750 VGLL2Q8N8G2 317 aa16.23■□□□□ 0.19
USP28-212ENST00000544750 TBC1D22AQ8WUA7 517 aa16.23■□□□□ 0.19
USP28-212ENST00000544750 TEKT1Q969V4 418 aa16.23■□□□□ 0.19
USP28-212ENST00000544750 PRO3102Q9H379 93 aa16.23■□□□□ 0.19
USP28-212ENST00000544750 SRRDQ9UH36 339 aa16.23■□□□□ 0.19
USP28-212ENST00000544750 UTYO14607 1347 aa16.22■□□□□ 0.19
USP28-212ENST00000544750 PPATQ06203 517 aa16.22■□□□□ 0.19
USP28-212ENST00000544750 MOGSQ13724 837 aa16.22■□□□□ 0.19
USP28-212ENST00000544750 CHRDL2Q6WN34 429 aa16.22■□□□□ 0.19
USP28-212ENST00000544750 TRIM47Q96LD4 638 aa16.22■□□□□ 0.19
USP28-212ENST00000544750 C9orf78Q9NZ63 289 aaPredicted RBP16.22■□□□□ 0.19
USP28-212ENST00000544750 ALPK3Q96L96 1907 aa16.21■□□□□ 0.19
USP28-212ENST00000544750 CHAF1AQ13111 956 aaPredicted RBP16.21■□□□□ 0.19
USP28-212ENST00000544750 RABL6Q3YEC7 729 aaPredicted RBP16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms