RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-223ENST00000544669 KIAA1468Q9P260 1216 aa15.14■□□□□ 0.01
CPSF7-223ENST00000544669 PYCARDQ9ULZ3 195 aa15.14■□□□□ 0.01
CPSF7-223ENST00000544669 IRS4O14654 1257 aaPredicted RBP15.13■□□□□ 0.01
CPSF7-223ENST00000544669 CHGBP05060 677 aa15.13■□□□□ 0.01
CPSF7-223ENST00000544669 SLC5A1P13866 664 aa15.13■□□□□ 0.01
CPSF7-223ENST00000544669 LIFRP42702 1097 aa15.13■□□□□ 0.01
CPSF7-223ENST00000544669 METAP2P50579 478 aaKnown RBP eCLIP15.13■□□□□ 0.01
CPSF7-223ENST00000544669 RCAN1P53805 252 aa15.13■□□□□ 0.01
CPSF7-223ENST00000544669 PPP2R5BQ15173 497 aa15.13■□□□□ 0.01
CPSF7-223ENST00000544669 NACAP1Q9BZK3 213 aa15.13■□□□□ 0.01
CPSF7-223ENST00000544669 KRT23Q9C075 422 aa15.13■□□□□ 0.01
CPSF7-223ENST00000544669 BCL11BQ9C0K0 894 aaPredicted RBP15.13■□□□□ 0.01
CPSF7-223ENST00000544669 PUS7LQ9H0K6 701 aaKnown RBP15.13■□□□□ 0.01
CPSF7-223ENST00000544669 TRMT112Q9UI30 125 aaKnown RBP15.13■□□□□ 0.01
CPSF7-223ENST00000544669 ZNF330Q9Y3S2 320 aaPredicted RBP15.13■□□□□ 0.01
CPSF7-223ENST00000544669 STK36Q9NRP7 1315 aa15.13■□□□□ 0.01
CPSF7-223ENST00000544669 CCP110O43303 1012 aa15.13■□□□□ 0.01
CPSF7-223ENST00000544669 SLC3A2P08195 630 aaKnown RBP15.13■□□□□ 0.01
CPSF7-223ENST00000544669 RBM10P98175 930 aaKnown RBP15.13■□□□□ 0.01
CPSF7-223ENST00000544669 GNL2Q13823 731 aaKnown RBP15.13■□□□□ 0.01
CPSF7-223ENST00000544669 SART3Q15020 963 aaKnown RBP15.13■□□□□ 0.01
CPSF7-223ENST00000544669 SLC39A14Q15043 492 aa15.13■□□□□ 0.01
CPSF7-223ENST00000544669 LRRC8AQ8IWT6 810 aa15.13■□□□□ 0.01
CPSF7-223ENST00000544669 AIDAQ96BJ3 306 aa15.13■□□□□ 0.01
CPSF7-223ENST00000544669 HPS5Q9UPZ3 1129 aa15.13■□□□□ 0.01
CPSF7-223ENST00000544669 CCDC196A0A1B0GTZ2 297 aa15.12■□□□□ 0.01
CPSF7-223ENST00000544669 PATL2C9JE40 543 aaKnown RBP15.12■□□□□ 0.01
CPSF7-223ENST00000544669 APPP05067 770 aa15.12■□□□□ 0.01
CPSF7-223ENST00000544669 SGMS1Q86VZ5 419 aa15.12■□□□□ 0.01
CPSF7-223ENST00000544669 CCDC34Q96HJ3 373 aa15.12■□□□□ 0.01
CPSF7-223ENST00000544669 GOLPH3LQ9H4A5 285 aa15.12■□□□□ 0.01
CPSF7-223ENST00000544669 LRP6O75581 1613 aa15.12■□□□□ 0.01
CPSF7-223ENST00000544669 IKBKBO14920 756 aa15.11■□□□□ 0.01
CPSF7-223ENST00000544669 DTNBO60941 627 aa15.11■□□□□ 0.01
CPSF7-223ENST00000544669 CYP19A1P11511 503 aaPredicted RBP15.11■□□□□ 0.01
CPSF7-223ENST00000544669 MCAMP43121 646 aa15.11■□□□□ 0.01
CPSF7-223ENST00000544669 KCNJ6P48051 423 aa15.11■□□□□ 0.01
CPSF7-223ENST00000544669 NLRP12P59046 1061 aa15.11■□□□□ 0.01
CPSF7-223ENST00000544669 KIF23Q02241 960 aaPredicted RBP15.11■□□□□ 0.01
CPSF7-223ENST00000544669 TMED8Q6PL24 325 aaPredicted RBP15.11■□□□□ 0.01
CPSF7-223ENST00000544669 CHST3Q7LGC8 479 aa15.11■□□□□ 0.01
CPSF7-223ENST00000544669 MPNDQ8N594 471 aa15.11■□□□□ 0.01
CPSF7-223ENST00000544669 VGLL2Q8N8G2 317 aa15.11■□□□□ 0.01
CPSF7-223ENST00000544669 CCDC150Q8NCX0 1101 aa15.11■□□□□ 0.01
CPSF7-223ENST00000544669 LAMA4Q16363 1823 aa15.11■□□□□ 0.01
CPSF7-223ENST00000544669 SH2B2O14492 632 aaPredicted RBP15.1■□□□□ 0.01
CPSF7-223ENST00000544669 ZBTB43O43298 467 aa15.1■□□□□ 0.01
CPSF7-223ENST00000544669 CTIFO43310 598 aaKnown RBP15.1■□□□□ 0.01
CPSF7-223ENST00000544669 IARSP41252 1262 aaKnown RBP15.1■□□□□ 0.01
CPSF7-223ENST00000544669 HAND2P61296 217 aa15.1■□□□□ 0.01
CPSF7-223ENST00000544669 SAFBQ15424 915 aaKnown RBP eCLIP15.1■□□□□ 0.01
CPSF7-223ENST00000544669 TPD52L1Q16890 204 aaPredicted RBP15.1■□□□□ 0.01
CPSF7-223ENST00000544669 PARP10Q53GL7 1025 aa15.1■□□□□ 0.01
CPSF7-223ENST00000544669 CCDC102BQ68D86 513 aa15.1■□□□□ 0.01
CPSF7-223ENST00000544669 ILDR1Q86SU0 546 aaPredicted RBP15.1■□□□□ 0.01
CPSF7-223ENST00000544669 PDCL2Q8N4E4 241 aa15.1■□□□□ 0.01
CPSF7-223ENST00000544669 ALG1Q9BT22 464 aa15.1■□□□□ 0.01
CPSF7-223ENST00000544669 CCDC94Q9BW85 323 aaPredicted RBP15.1■□□□□ 0.01
CPSF7-223ENST00000544669 RNF41Q9H4P4 317 aaPredicted RBP15.1■□□□□ 0.01
CPSF7-223ENST00000544669 GREM2Q9H772 168 aa15.1■□□□□ 0.01
CPSF7-223ENST00000544669 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.1■□□□□ 0.01
CPSF7-223ENST00000544669 ASAP1Q9ULH1 1129 aa15.1■□□□□ 0.01
CPSF7-223ENST00000544669 RIC1Q4ADV7 1423 aa15.1■□□□□ 0.01
CPSF7-223ENST00000544669 FAM237AA0A1B0GTK4 181 aa15.1■□□□□ 0.01
CPSF7-223ENST00000544669 EXOC5O00471 708 aa15.1■□□□□ 0.01
CPSF7-223ENST00000544669 FOXP2O15409 715 aa15.1■□□□□ 0.01
CPSF7-223ENST00000544669 CBFA2T2O43439 604 aa15.1■□□□□ 0.01
CPSF7-223ENST00000544669 ZNF202O95125 648 aa15.1■□□□□ 0.01
CPSF7-223ENST00000544669 ANTXR2P58335 489 aa15.1■□□□□ 0.01
CPSF7-223ENST00000544669 GUCY1B3Q02153 619 aa15.1■□□□□ 0.01
CPSF7-223ENST00000544669 DHX40Q8IX18 779 aaKnown RBP15.1■□□□□ 0.01
CPSF7-223ENST00000544669 OSBPL5Q9H0X9 879 aaPredicted RBP15.1■□□□□ 0.01
CPSF7-223ENST00000544669 BCL9O00512 1426 aa15.1■□□□□ 0.01
CPSF7-223ENST00000544669 IDH1O75874 414 aaKnown RBP15.09■□□□□ 0.01
CPSF7-223ENST00000544669 TNNT1P13805 278 aa15.09■□□□□ 0.01
CPSF7-223ENST00000544669 PDE6AP16499 860 aa15.09■□□□□ 0.01
CPSF7-223ENST00000544669 SCARF1Q14162 830 aa15.09■□□□□ 0.01
CPSF7-223ENST00000544669 NFXL1Q6ZNB6 911 aa15.09■□□□□ 0.01
CPSF7-223ENST00000544669 C11orf57Q6ZUT1 292 aaPredicted RBP15.09■□□□□ 0.01
CPSF7-223ENST00000544669 ZNF34Q8IZ26 560 aa15.09■□□□□ 0.01
CPSF7-223ENST00000544669 STRBPQ96SI9 672 aaKnown RBP15.09■□□□□ 0.01
CPSF7-223ENST00000544669 ZNF532Q9HCE3 1301 aa15.09■□□□□ 0.01
CPSF7-223ENST00000544669 MYH15Q9Y2K3 1946 aa15.09■□□□□ 0.01
CPSF7-223ENST00000544669 ERICH2A1L162 156 aa15.08■□□□□ 0.01
CPSF7-223ENST00000544669 CCDC69A6NI79 296 aa15.08■□□□□ 0.01
CPSF7-223ENST00000544669 CUTAO60888 179 aa15.08■□□□□ 0.01
CPSF7-223ENST00000544669 POLR3DP05423 398 aaPredicted RBP15.08■□□□□ 0.01
CPSF7-223ENST00000544669 FGFR2P21802 821 aa15.08■□□□□ 0.01
CPSF7-223ENST00000544669 NDUFA8P51970 172 aa15.08■□□□□ 0.01
CPSF7-223ENST00000544669 SSRP1Q08945 709 aaKnown RBP15.08■□□□□ 0.01
CPSF7-223ENST00000544669 SLFNL1Q499Z3 407 aa15.08■□□□□ 0.01
CPSF7-223ENST00000544669 APOA5Q6Q788 366 aa15.08■□□□□ 0.01
CPSF7-223ENST00000544669 DZIP3Q86Y13 1208 aaKnown RBP15.08■□□□□ 0.01
CPSF7-223ENST00000544669 TRIM22Q8IYM9 498 aa15.08■□□□□ 0.01
CPSF7-223ENST00000544669 CCDC112Q8NEF3 446 aa15.08■□□□□ 0.01
CPSF7-223ENST00000544669 NAPBQ9H115 298 aa15.08■□□□□ 0.01
CPSF7-223ENST00000544669 SLC12A7Q9Y666 1083 aa15.08■□□□□ 0.01
CPSF7-223ENST00000544669 NID2Q14112 1375 aa15.08■□□□□ 0
CPSF7-223ENST00000544669 SKILP12757 684 aa15.08■□□□□ 0
CPSF7-223ENST00000544669 U2AF2P26368 475 aaKnown RBP eCLIP15.08■□□□□ 09e-9■■■□□ 15
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms