RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 ADARB2Q9NS39 739 aaKnown RBP14.8□□□□□ -0.04
DDX55-210ENST00000543016 PAG1Q9NWQ8 432 aa14.8□□□□□ -0.04
DDX55-210ENST00000543016 LRP2BPQ9P2M1 347 aa14.8□□□□□ -0.04
DDX55-210ENST00000543016 ABCF2Q9UG63 623 aa14.8□□□□□ -0.04
DDX55-210ENST00000543016 TTF2Q9UNY4 1162 aaKnown RBP14.8□□□□□ -0.04
DDX55-210ENST00000543016 JAG2Q9Y219 1238 aa14.8□□□□□ -0.04
DDX55-210ENST00000543016 COL1A1P02452 1464 aaPredicted RBP14.8□□□□□ -0.04
DDX55-210ENST00000543016 WDR90Q96KV7 1748 aa14.8□□□□□ -0.04
DDX55-210ENST00000543016 LDHCP07864 332 aa14.79□□□□□ -0.04
DDX55-210ENST00000543016 HHIPL2Q6UWX4 724 aa14.79□□□□□ -0.04
DDX55-210ENST00000543016 USP50Q70EL3 339 aaPredicted RBP14.79□□□□□ -0.04
DDX55-210ENST00000543016 MICALL2Q8IY33 904 aa14.79□□□□□ -0.04
DDX55-210ENST00000543016 FAM163AQ96GL9 167 aaPredicted RBP14.79□□□□□ -0.04
DDX55-210ENST00000543016 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.79□□□□□ -0.043e-11■□□□□ 10.1
DDX55-210ENST00000543016 GPBP1L1Q9HC44 474 aaPredicted RBP14.79□□□□□ -0.04
DDX55-210ENST00000543016 EPHX2P34913 555 aa14.78□□□□□ -0.04
DDX55-210ENST00000543016 ZSCAN25Q6NSZ9 544 aa14.78□□□□□ -0.04
DDX55-210ENST00000543016 PI16Q6UXB8 463 aa14.78□□□□□ -0.04
DDX55-210ENST00000543016 DZIP1Q86YF9 867 aaKnown RBP14.78□□□□□ -0.04
DDX55-210ENST00000543016 TEKT1Q969V4 418 aa14.78□□□□□ -0.04
DDX55-210ENST00000543016 DNAJC2Q99543 621 aaKnown RBP14.78□□□□□ -0.04
DDX55-210ENST00000543016 MXD3Q9BW11 206 aa14.78□□□□□ -0.04
DDX55-210ENST00000543016 TAF1DQ9H5J8 278 aaPredicted RBP14.78□□□□□ -0.04
DDX55-210ENST00000543016 FOXD4L1Q9NU39 408 aa14.78□□□□□ -0.04
DDX55-210ENST00000543016 RAI14Q9P0K7 980 aa14.78□□□□□ -0.04
DDX55-210ENST00000543016 AKAP11Q9UKA4 1901 aa14.78□□□□□ -0.04
DDX55-210ENST00000543016 MYH13Q9UKX3 1938 aa14.78□□□□□ -0.04
DDX55-210ENST00000543016 SCN4AP35499 1836 aa14.78□□□□□ -0.04
DDX55-210ENST00000543016 GOLIM4O00461 696 aa14.77□□□□□ -0.05
DDX55-210ENST00000543016 MAP4K4O95819 1239 aaPredicted RBP14.77□□□□□ -0.05
DDX55-210ENST00000543016 PDE4AP27815 886 aa14.77□□□□□ -0.05
DDX55-210ENST00000543016 PRDX5P30044 214 aa14.77□□□□□ -0.05
DDX55-210ENST00000543016 TBC1D9Q6ZT07 1266 aa14.77□□□□□ -0.05
DDX55-210ENST00000543016 CERS3Q8IU89 383 aa14.77□□□□□ -0.05
DDX55-210ENST00000543016 ZC3H15Q8WU90 426 aaKnown RBP14.77□□□□□ -0.05
DDX55-210ENST00000543016 EVI5LQ96CN4 794 aa14.77□□□□□ -0.05
DDX55-210ENST00000543016 RRAGCQ9HB90 399 aa14.77□□□□□ -0.05
DDX55-210ENST00000543016 MYOZ2Q9NPC6 264 aa14.77□□□□□ -0.05
DDX55-210ENST00000543016 POTECB2RU33 542 aa14.76□□□□□ -0.05
DDX55-210ENST00000543016 IDH1O75874 414 aaKnown RBP14.76□□□□□ -0.05
DDX55-210ENST00000543016 ZFYP08048 801 aaPredicted RBP14.76□□□□□ -0.05
DDX55-210ENST00000543016 EPS15P42566 896 aa14.76□□□□□ -0.05
DDX55-210ENST00000543016 DLGAP5Q15398 846 aa14.76□□□□□ -0.05
DDX55-210ENST00000543016 KBTBD3Q8NAB2 608 aa14.76□□□□□ -0.05
DDX55-210ENST00000543016 NSUN4Q96CB9 384 aaKnown RBP14.76□□□□□ -0.05
DDX55-210ENST00000543016 ZDHHC15Q96MV8 337 aa14.76□□□□□ -0.05
DDX55-210ENST00000543016 PIH1D3Q9NQM4 214 aaKnown RBP14.76□□□□□ -0.05
DDX55-210ENST00000543016 F8W031 263 aaPredicted RBP14.75□□□□□ -0.05
DDX55-210ENST00000543016 MYO1BO43795 1136 aa14.75□□□□□ -0.05
DDX55-210ENST00000543016 CRKP46108 304 aa14.75□□□□□ -0.05
DDX55-210ENST00000543016 MECOMQ03112 1051 aa14.75□□□□□ -0.05
DDX55-210ENST00000543016 KIF4BQ2VIQ3 1234 aa14.75□□□□□ -0.05
DDX55-210ENST00000543016 CFAP100Q494V2 611 aa14.75□□□□□ -0.05
DDX55-210ENST00000543016 TSHZ3Q63HK5 1081 aa14.75□□□□□ -0.05
DDX55-210ENST00000543016 NAA16Q6N069 864 aaPredicted RBP14.75□□□□□ -0.05
DDX55-210ENST00000543016 CNTROBQ8N137 903 aa14.75□□□□□ -0.05
DDX55-210ENST00000543016 ZBED3Q96IU2 234 aaPredicted RBP14.75□□□□□ -0.05
DDX55-210ENST00000543016 ZNF646O15015 1829 aaPredicted RBP14.75□□□□□ -0.05
DDX55-210ENST00000543016 GAKO14976 1311 aa14.74□□□□□ -0.05
DDX55-210ENST00000543016 SPDYE2BA6NHP3 402 aa14.74□□□□□ -0.05
DDX55-210ENST00000543016 BAG3O95817 575 aa14.74□□□□□ -0.05
DDX55-210ENST00000543016 MYCNP04198 464 aaPredicted RBP14.74□□□□□ -0.05
DDX55-210ENST00000543016 SPDYE6P0CI01 402 aa14.74□□□□□ -0.05
DDX55-210ENST00000543016 UBE3CQ15386 1083 aa14.74□□□□□ -0.05
DDX55-210ENST00000543016 GRIK5Q16478 980 aa14.74□□□□□ -0.05
DDX55-210ENST00000543016 TTC22Q5TAA0 569 aa14.74□□□□□ -0.05
DDX55-210ENST00000543016 ZNF784Q8NCA9 323 aaPredicted RBP14.74□□□□□ -0.05
DDX55-210ENST00000543016 ZNF526Q8TF50 670 aaPredicted RBP14.74□□□□□ -0.05
DDX55-210ENST00000543016 NOL10Q9BSC4 688 aaKnown RBP14.74□□□□□ -0.05
DDX55-210ENST00000543016 ANTXR1Q9H6X2 564 aa14.74□□□□□ -0.05
DDX55-210ENST00000543016 NMRK2Q9NPI5 230 aa14.74□□□□□ -0.05
DDX55-210ENST00000543016 RFX7Q2KHR2 1363 aa14.73□□□□□ -0.05
DDX55-210ENST00000543016 MROH7-TTC4A0A0A0MT08 1334 aa14.73□□□□□ -0.05
DDX55-210ENST00000543016 GPR75-ASB3A0A0A6YYF3 556 aa14.73□□□□□ -0.05
DDX55-210ENST00000543016 PLCG2P16885 1265 aa14.73□□□□□ -0.05
DDX55-210ENST00000543016 RBM5P52756 815 aaKnown RBP eCLIP14.73□□□□□ -0.05
DDX55-210ENST00000543016 TBC1D10BQ4KMP7 808 aaPredicted RBP14.73□□□□□ -0.05
DDX55-210ENST00000543016 SLC9C2Q5TAH2 1124 aa14.73□□□□□ -0.05
DDX55-210ENST00000543016 SAMD7Q7Z3H4 446 aa14.73□□□□□ -0.05
DDX55-210ENST00000543016 LDHDQ86WU2 507 aa14.73□□□□□ -0.05
DDX55-210ENST00000543016 PGAP2Q9UHJ9 254 aa14.73□□□□□ -0.05
DDX55-210ENST00000543016 NDUFB9Q9Y6M9 179 aa14.73□□□□□ -0.05
DDX55-210ENST00000543016 PITPNM2Q9BZ72 1349 aa14.72□□□□□ -0.05
DDX55-210ENST00000543016 TRIM6-TRIM34B2RNG4 842 aa14.72□□□□□ -0.05
DDX55-210ENST00000543016 HIP1O00291 1037 aa14.72□□□□□ -0.05
DDX55-210ENST00000543016 WNT10BO00744 389 aa14.72□□□□□ -0.05
DDX55-210ENST00000543016 PDE6AP16499 860 aa14.72□□□□□ -0.05
DDX55-210ENST00000543016 CYP7A1P22680 504 aa14.72□□□□□ -0.05
DDX55-210ENST00000543016 PPP4CP60510 307 aa14.72□□□□□ -0.05
DDX55-210ENST00000543016 FKBP1CQ5VVH2 108 aa14.72□□□□□ -0.05
DDX55-210ENST00000543016 MAGEB6Q8N7X4 407 aa14.72□□□□□ -0.05
DDX55-210ENST00000543016 FSD1Q9BTV5 496 aa14.72□□□□□ -0.05
DDX55-210ENST00000543016 DAGLAQ9Y4D2 1042 aa14.72□□□□□ -0.05
DDX55-210ENST00000543016 GTF3C3Q9Y5Q9 886 aa14.72□□□□□ -0.05
DDX55-210ENST00000543016 SHTN1A0MZ66 631 aa14.71□□□□□ -0.05
DDX55-210ENST00000543016 RNF113AO15541 343 aaKnown RBP14.71□□□□□ -0.05
DDX55-210ENST00000543016 CAPN15O75808 1086 aa14.71□□□□□ -0.05
DDX55-210ENST00000543016 ADD2P35612 726 aa14.71□□□□□ -0.05
DDX55-210ENST00000543016 DIXDC1Q155Q3 683 aa14.71□□□□□ -0.05
DDX55-210ENST00000543016 BMP2KLQ5H9B9 411 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms