RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 GYG1P46976 350 aa22.62■■□□□ 1.21
CLSTN3-214ENST00000542663 DZIP1LQ8IYY4 767 aaKnown RBP22.61■■□□□ 1.21
CLSTN3-214ENST00000542663 BRI3BPQ8WY22 251 aa22.61■■□□□ 1.21
CLSTN3-214ENST00000542663 FAM84BQ96KN1 310 aaPredicted RBP22.61■■□□□ 1.21
CLSTN3-214ENST00000542663 VGLL4Q14135 290 aa22.6■■□□□ 1.21
CLSTN3-214ENST00000542663 UBE4AQ14139 1066 aa22.6■■□□□ 1.21
CLSTN3-214ENST00000542663 TAF7LQ5H9L4 462 aa22.6■■□□□ 1.21
CLSTN3-214ENST00000542663 PUS3Q9BZE2 481 aaKnown RBP22.6■■□□□ 1.21
CLSTN3-214ENST00000542663 TMEM39BQ9GZU3 492 aa22.6■■□□□ 1.21
CLSTN3-214ENST00000542663 TCP10L2B9ZVM9 353 aa22.59■■□□□ 1.21
CLSTN3-214ENST00000542663 HIBADHP31937 336 aaKnown RBP22.59■■□□□ 1.21
CLSTN3-214ENST00000542663 GRIK5Q16478 980 aa22.59■■□□□ 1.21
CLSTN3-214ENST00000542663 DDX55Q8NHQ9 600 aaKnown RBP eCLIP22.59■■□□□ 1.21
CLSTN3-214ENST00000542663 ZNF333Q96JL9 665 aa22.59■■□□□ 1.21
CLSTN3-214ENST00000542663 CRKP46108 304 aa22.58■■□□□ 1.21
CLSTN3-214ENST00000542663 WDR63Q8IWG1 891 aa22.58■■□□□ 1.21
CLSTN3-214ENST00000542663 KAZALD1Q96I82 304 aa22.58■■□□□ 1.21
CLSTN3-214ENST00000542663 CCL15-CCL14A0A0B4J2E2 113 aa22.57■■□□□ 1.2
CLSTN3-214ENST00000542663 TAF1CQ15572 869 aaPredicted RBP22.57■■□□□ 1.2
CLSTN3-214ENST00000542663 CCL15Q16663 113 aa22.57■■□□□ 1.2
CLSTN3-214ENST00000542663 FAM43AQ8N2R8 423 aa22.57■■□□□ 1.2
CLSTN3-214ENST00000542663 SPINK5Q9NQ38 1064 aaPredicted RBP22.57■■□□□ 1.2
CLSTN3-214ENST00000542663 PTCH2Q9Y6C5 1203 aa22.57■■□□□ 1.2
CLSTN3-214ENST00000542663 AK9Q5TCS8 1911 aa22.57■■□□□ 1.2
CLSTN3-214ENST00000542663 GTF2A2P52657 109 aa22.56■■□□□ 1.2
CLSTN3-214ENST00000542663 MAP3K9P80192 1104 aa22.56■■□□□ 1.2
CLSTN3-214ENST00000542663 C9orf78Q9NZ63 289 aaPredicted RBP22.56■■□□□ 1.2
CLSTN3-214ENST00000542663 SALL2Q9Y467 1007 aaPredicted RBP22.56■■□□□ 1.2
CLSTN3-214ENST00000542663 RIPOR2Q9Y4F9 1068 aa22.56■■□□□ 1.2
CLSTN3-214ENST00000542663 OTUD5Q96G74 571 aa22.55■■□□□ 1.2
CLSTN3-214ENST00000542663 SUCLG2Q96I99 432 aa22.55■■□□□ 1.2
CLSTN3-214ENST00000542663 ZFYVE28Q9HCC9 887 aa22.55■■□□□ 1.2
CLSTN3-214ENST00000542663 IQSEC3Q9UPP2 1182 aaPredicted RBP22.55■■□□□ 1.2
CLSTN3-214ENST00000542663 MGAMO43451 1857 aa22.54■■□□□ 1.2
CLSTN3-214ENST00000542663 ALDH1L1O75891 902 aa22.54■■□□□ 1.2
CLSTN3-214ENST00000542663 TNNI2P48788 182 aa22.54■■□□□ 1.2
CLSTN3-214ENST00000542663 SLC9C1Q4G0N8 1177 aa22.54■■□□□ 1.2
CLSTN3-214ENST00000542663 FBXO33Q7Z6M2 555 aa22.54■■□□□ 1.2
CLSTN3-214ENST00000542663 TMEM106CQ9BVX2 250 aa22.54■■□□□ 1.2
CLSTN3-214ENST00000542663 SPDYE5A6NIY4 337 aa22.53■■□□□ 1.2
CLSTN3-214ENST00000542663 CACNB3P54284 484 aa22.53■■□□□ 1.2
CLSTN3-214ENST00000542663 CSADQ9Y600 493 aa22.53■■□□□ 1.2
CLSTN3-214ENST00000542663 SNCAIPQ9Y6H5 919 aa22.53■■□□□ 1.2
CLSTN3-214ENST00000542663 NBPF7P0C2Y1 421 aaPredicted RBP22.52■■□□□ 1.2
CLSTN3-214ENST00000542663 FXR1P51114 621 aaKnown RBP eCLIP22.52■■□□□ 1.2
CLSTN3-214ENST00000542663 SLC4A10Q6U841 1118 aa22.52■■□□□ 1.2
CLSTN3-214ENST00000542663 ARHGAP39Q9C0H5 1083 aa22.52■■□□□ 1.2
CLSTN3-214ENST00000542663 SRCIN1Q9C0H9 1055 aa22.52■■□□□ 1.2
CLSTN3-214ENST00000542663 MROH5Q6ZUA9 1318 aa22.52■■□□□ 1.2
CLSTN3-214ENST00000542663 HDLBPQ00341 1268 aaKnown RBP22.51■■□□□ 1.19
CLSTN3-214ENST00000542663 NBPF11Q86T75 865 aa22.51■■□□□ 1.19
CLSTN3-214ENST00000542663 UTYO14607 1347 aa22.51■■□□□ 1.19
CLSTN3-214ENST00000542663 TLR2O60603 784 aa22.5■■□□□ 1.19
CLSTN3-214ENST00000542663 CHAF1AQ13111 956 aaPredicted RBP22.5■■□□□ 1.19
CLSTN3-214ENST00000542663 ARHGEF6Q15052 776 aa22.5■■□□□ 1.19
CLSTN3-214ENST00000542663 LRRC24Q50LG9 513 aa22.5■■□□□ 1.19
CLSTN3-214ENST00000542663 VGLL2Q8N8G2 317 aa22.5■■□□□ 1.19
CLSTN3-214ENST00000542663 CEP290O15078 2479 aa22.5■■□□□ 1.19
CLSTN3-214ENST00000542663 BTBD19C9JJ37 291 aa22.49■■□□□ 1.19
CLSTN3-214ENST00000542663 LACTBP83111 547 aaPredicted RBP22.49■■□□□ 1.19
CLSTN3-214ENST00000542663 ERO1BQ86YB8 467 aa22.49■■□□□ 1.19
CLSTN3-214ENST00000542663 ZKSCAN4Q969J2 545 aaPredicted RBP22.49■■□□□ 1.19
CLSTN3-214ENST00000542663 TEKT1Q969V4 418 aa22.49■■□□□ 1.19
CLSTN3-214ENST00000542663 BICC1Q9H694 974 aaKnown RBP22.49■■□□□ 1.19
CLSTN3-214ENST00000542663 MRS2Q9HD23 443 aa22.49■■□□□ 1.19
CLSTN3-214ENST00000542663 IRF6O14896 467 aa22.48■■□□□ 1.19
CLSTN3-214ENST00000542663 CETPP11597 493 aa22.48■■□□□ 1.19
CLSTN3-214ENST00000542663 RABL6Q3YEC7 729 aaPredicted RBP22.48■■□□□ 1.19
CLSTN3-214ENST00000542663 VPS37DQ86XT2 251 aa22.48■■□□□ 1.19
CLSTN3-214ENST00000542663 SH3TC2Q8TF17 1288 aa22.48■■□□□ 1.19
CLSTN3-214ENST00000542663 TBC1D22AQ8WUA7 517 aa22.48■■□□□ 1.19
CLSTN3-214ENST00000542663 ZDHHC15Q96MV8 337 aa22.48■■□□□ 1.19
CLSTN3-214ENST00000542663 WRNIP1Q96S55 665 aa22.48■■□□□ 1.19
CLSTN3-214ENST00000542663 ZCCHC17Q9NP64 241 aaKnown RBP22.48■■□□□ 1.19
CLSTN3-214ENST00000542663 MYCP01106 439 aaPredicted RBP22.47■■□□□ 1.19
CLSTN3-214ENST00000542663 SLC4A8Q2Y0W8 1093 aa22.47■■□□□ 1.19
CLSTN3-214ENST00000542663 APOBEC3HQ6NTF7 200 aaKnown RBP22.47■■□□□ 1.19
CLSTN3-214ENST00000542663 FAM83AQ86UY5 434 aa22.47■■□□□ 1.19
CLSTN3-214ENST00000542663 ANKRD44Q8N8A2 993 aa22.47■■□□□ 1.19
CLSTN3-214ENST00000542663 COLQQ9Y215 455 aaPredicted RBP22.47■■□□□ 1.19
CLSTN3-214ENST00000542663 DOCK2Q92608 1830 aa22.47■■□□□ 1.19
CLSTN3-214ENST00000542663 RPAP1Q9BWH6 1393 aaPredicted RBP22.47■■□□□ 1.19
CLSTN3-214ENST00000542663 PPIL2Q13356 520 aa22.46■■□□□ 1.19
CLSTN3-214ENST00000542663 MRIQ9BWK5 157 aa22.46■■□□□ 1.19
CLSTN3-214ENST00000542663 PTPRFP10586 1907 aa22.46■■□□□ 1.19
CLSTN3-214ENST00000542663 PDE8BO95263 885 aa22.45■■□□□ 1.18
CLSTN3-214ENST00000542663 CTGFP29279 349 aa22.45■■□□□ 1.18
CLSTN3-214ENST00000542663 BCAMP50895 628 aa22.45■■□□□ 1.18
CLSTN3-214ENST00000542663 SNAPC2Q13487 334 aa22.45■■□□□ 1.18
CLSTN3-214ENST00000542663 CAVIN4Q5BKX8 364 aa22.45■■□□□ 1.18
CLSTN3-214ENST00000542663 METTL24Q5JXM2 366 aa22.45■■□□□ 1.18
CLSTN3-214ENST00000542663 FKBP1CQ5VVH2 108 aa22.45■■□□□ 1.18
CLSTN3-214ENST00000542663 SZT2Q5T011 3432 aa22.45■■□□□ 1.18
CLSTN3-214ENST00000542663 FRAT2O75474 233 aaPredicted RBP22.44■■□□□ 1.18
CLSTN3-214ENST00000542663 KLHDC4Q8TBB5 520 aa22.44■■□□□ 1.18
CLSTN3-214ENST00000542663 MYH2Q9UKX2 1941 aa22.44■■□□□ 1.18
CLSTN3-214ENST00000542663 KIF22Q14807 665 aa22.43■■□□□ 1.18
CLSTN3-214ENST00000542663 HHIPL2Q6UWX4 724 aa22.43■■□□□ 1.18
CLSTN3-214ENST00000542663 C17orf99Q6UX52 265 aa22.43■■□□□ 1.18
CLSTN3-214ENST00000542663 TMOD2Q9NZR1 351 aa22.43■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms