RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 TCP10L2B9ZVM9 353 aa19.56■□□□□ 0.72
CLSTN3-213ENST00000541953 CACNB3P54284 484 aa19.56■□□□□ 0.72
CLSTN3-213ENST00000541953 SUPT20HL1Q3ZLR7 823 aa19.56■□□□□ 0.72
CLSTN3-213ENST00000541953 PRPF38BQ5VTL8 546 aaKnown RBP19.56■□□□□ 0.72
CLSTN3-213ENST00000541953 PPP1R3FQ6ZSY5 799 aaPredicted RBP19.56■□□□□ 0.72
CLSTN3-213ENST00000541953 DZIP1LQ8IYY4 767 aaKnown RBP19.56■□□□□ 0.72
CLSTN3-213ENST00000541953 VGLL2Q8N8G2 317 aa19.56■□□□□ 0.72
CLSTN3-213ENST00000541953 CD99L2Q8TCZ2 262 aa19.56■□□□□ 0.72
CLSTN3-213ENST00000541953 POTEFA5A3E0 1075 aa19.55■□□□□ 0.72
CLSTN3-213ENST00000541953 ALDH1A1P00352 501 aa19.55■□□□□ 0.72
CLSTN3-213ENST00000541953 CRKP46108 304 aa19.55■□□□□ 0.72
CLSTN3-213ENST00000541953 IREB2P48200 963 aaKnown RBP19.55■□□□□ 0.72
CLSTN3-213ENST00000541953 RABL6Q3YEC7 729 aaPredicted RBP19.55■□□□□ 0.72
CLSTN3-213ENST00000541953 SERPINA10Q9UK55 444 aa19.55■□□□□ 0.72
CLSTN3-213ENST00000541953 RBBP6Q7Z6E9 1792 aaKnown RBP19.55■□□□□ 0.72
CLSTN3-213ENST00000541953 CHAF1AQ13111 956 aaPredicted RBP19.54■□□□□ 0.72
CLSTN3-213ENST00000541953 FBXO33Q7Z6M2 555 aa19.54■□□□□ 0.72
CLSTN3-213ENST00000541953 ANKRD13AQ8IZ07 590 aa19.54■□□□□ 0.72
CLSTN3-213ENST00000541953 MRPL50Q8N5N7 158 aaKnown RBP19.54■□□□□ 0.72
CLSTN3-213ENST00000541953 OPTNQ96CV9 577 aa19.54■□□□□ 0.72
CLSTN3-213ENST00000541953 MS4A4AQ96JQ5 239 aa19.54■□□□□ 0.72
CLSTN3-213ENST00000541953 TESPA1A2RU30 521 aaPredicted RBP19.53■□□□□ 0.72
CLSTN3-213ENST00000541953 INHBEP58166 350 aa19.53■□□□□ 0.72
CLSTN3-213ENST00000541953 VGLL4Q14135 290 aa19.53■□□□□ 0.72
CLSTN3-213ENST00000541953 BRI3BPQ8WY22 251 aa19.53■□□□□ 0.72
CLSTN3-213ENST00000541953 UNCXA6NJT0 531 aa19.51■□□□□ 0.71
CLSTN3-213ENST00000541953 METTL24Q5JXM2 366 aa19.51■□□□□ 0.71
CLSTN3-213ENST00000541953 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.51■□□□□ 0.71
CLSTN3-213ENST00000541953 MYH13Q9UKX3 1938 aa19.51■□□□□ 0.71
CLSTN3-213ENST00000541953 MROH5Q6ZUA9 1318 aa19.51■□□□□ 0.71
CLSTN3-213ENST00000541953 BCAMP50895 628 aa19.5■□□□□ 0.71
CLSTN3-213ENST00000541953 TNFAIP1Q13829 316 aa19.5■□□□□ 0.71
CLSTN3-213ENST00000541953 PTPN22Q9Y2R2 807 aa19.5■□□□□ 0.71
CLSTN3-213ENST00000541953 KIAA0100Q14667 2235 aaKnown RBP19.49■□□□□ 0.71
CLSTN3-213ENST00000541953 ZNF316A6NFI3 1004 aaPredicted RBP19.49■□□□□ 0.71
CLSTN3-213ENST00000541953 FAM43AQ8N2R8 423 aa19.49■□□□□ 0.71
CLSTN3-213ENST00000541953 SSH1Q8WYL5 1049 aa19.49■□□□□ 0.71
CLSTN3-213ENST00000541953 PDE8BO95263 885 aa19.48■□□□□ 0.71
CLSTN3-213ENST00000541953 OTUD5Q96G74 571 aa19.48■□□□□ 0.71
CLSTN3-213ENST00000541953 USP44Q9H0E7 712 aa19.48■□□□□ 0.71
CLSTN3-213ENST00000541953 SNCAIPQ9Y6H5 919 aa19.48■□□□□ 0.71
CLSTN3-213ENST00000541953 CCL15-CCL14A0A0B4J2E2 113 aa19.47■□□□□ 0.71
CLSTN3-213ENST00000541953 FGFR2P21802 821 aa19.47■□□□□ 0.71
CLSTN3-213ENST00000541953 RFX5P48382 616 aaPredicted RBP19.47■□□□□ 0.71
CLSTN3-213ENST00000541953 SP3Q02447 781 aa19.47■□□□□ 0.71
CLSTN3-213ENST00000541953 CCL15Q16663 113 aa19.47■□□□□ 0.71
CLSTN3-213ENST00000541953 APOBEC3HQ6NTF7 200 aaKnown RBP19.47■□□□□ 0.71
CLSTN3-213ENST00000541953 ERO1AQ96HE7 468 aa19.47■□□□□ 0.71
CLSTN3-213ENST00000541953 MAP3K9P80192 1104 aa19.46■□□□□ 0.71
CLSTN3-213ENST00000541953 VPS37DQ86XT2 251 aa19.46■□□□□ 0.71
CLSTN3-213ENST00000541953 ZKSCAN4Q969J2 545 aaPredicted RBP19.46■□□□□ 0.71
CLSTN3-213ENST00000541953 EFCC1Q9HA90 598 aa19.46■□□□□ 0.71
CLSTN3-213ENST00000541953 TEKT1Q969V4 418 aa19.45■□□□□ 0.7
CLSTN3-213ENST00000541953 ARMC5Q96C12 935 aa19.45■□□□□ 0.7
CLSTN3-213ENST00000541953 ZDHHC15Q96MV8 337 aa19.45■□□□□ 0.7
CLSTN3-213ENST00000541953 ARHGAP39Q9C0H5 1083 aa19.45■□□□□ 0.7
CLSTN3-213ENST00000541953 SPDYE5A6NIY4 337 aa19.44■□□□□ 0.7
CLSTN3-213ENST00000541953 EN2P19622 333 aaPredicted RBP19.44■□□□□ 0.7
CLSTN3-213ENST00000541953 TNNI2P48788 182 aa19.44■□□□□ 0.7
CLSTN3-213ENST00000541953 HDLBPQ00341 1268 aaKnown RBP19.44■□□□□ 0.7
CLSTN3-213ENST00000541953 TAF1CQ15572 869 aaPredicted RBP19.44■□□□□ 0.7
CLSTN3-213ENST00000541953 OTUD7BQ6GQQ9 843 aa19.44■□□□□ 0.7
CLSTN3-213ENST00000541953 PTCH2Q9Y6C5 1203 aa19.44■□□□□ 0.7
CLSTN3-213ENST00000541953 FRAT2O75474 233 aaPredicted RBP19.43■□□□□ 0.7
CLSTN3-213ENST00000541953 CAVIN4Q5BKX8 364 aa19.43■□□□□ 0.7
CLSTN3-213ENST00000541953 ATG9AQ7Z3C6 839 aa19.43■□□□□ 0.7
CLSTN3-213ENST00000541953 TBC1D22AQ8WUA7 517 aa19.43■□□□□ 0.7
CLSTN3-213ENST00000541953 WRNIP1Q96S55 665 aa19.43■□□□□ 0.7
CLSTN3-213ENST00000541953 PTPRCP08575 1304 aa19.43■□□□□ 0.7
CLSTN3-213ENST00000541953 IRF6O14896 467 aa19.42■□□□□ 0.7
CLSTN3-213ENST00000541953 GTF2A2P52657 109 aa19.42■□□□□ 0.7
CLSTN3-213ENST00000541953 PUM3Q15397 648 aaKnown RBP19.42■□□□□ 0.7
CLSTN3-213ENST00000541953 DIXDC1Q155Q3 683 aa19.42■□□□□ 0.7
CLSTN3-213ENST00000541953 CDCA7LQ96GN5 454 aa19.42■□□□□ 0.7
CLSTN3-213ENST00000541953 CSADQ9Y600 493 aa19.42■□□□□ 0.7
CLSTN3-213ENST00000541953 BTBD19C9JJ37 291 aa19.41■□□□□ 0.7
CLSTN3-213ENST00000541953 ECM2O94769 699 aaPredicted RBP19.41■□□□□ 0.7
CLSTN3-213ENST00000541953 INPP5BP32019 993 aa19.41■□□□□ 0.7
CLSTN3-213ENST00000541953 INTS3Q68E01 1043 aaKnown RBP19.41■□□□□ 0.7
CLSTN3-213ENST00000541953 MIGA2Q7L4E1 593 aa19.41■□□□□ 0.7
CLSTN3-213ENST00000541953 ZNF333Q96JL9 665 aa19.41■□□□□ 0.7
CLSTN3-213ENST00000541953 RPAP1Q9BWH6 1393 aaPredicted RBP19.41■□□□□ 0.7
CLSTN3-213ENST00000541953 EYA2O00167 538 aa19.4■□□□□ 0.7
CLSTN3-213ENST00000541953 CTGFP29279 349 aa19.4■□□□□ 0.7
CLSTN3-213ENST00000541953 NFIAQ12857 509 aa19.4■□□□□ 0.7
CLSTN3-213ENST00000541953 FAM83AQ86UY5 434 aa19.4■□□□□ 0.7
CLSTN3-213ENST00000541953 ZFYVE28Q9HCC9 887 aa19.4■□□□□ 0.7
CLSTN3-213ENST00000541953 DAGLAQ9Y4D2 1042 aa19.4■□□□□ 0.7
CLSTN3-213ENST00000541953 KIF16BQ96L93 1317 aa19.4■□□□□ 0.7
CLSTN3-213ENST00000541953 MYCP01106 439 aaPredicted RBP19.39■□□□□ 0.69
CLSTN3-213ENST00000541953 PRDX5P30044 214 aa19.39■□□□□ 0.69
CLSTN3-213ENST00000541953 SLFN5Q08AF3 891 aa19.39■□□□□ 0.69
CLSTN3-213ENST00000541953 SIL1Q9H173 461 aa19.39■□□□□ 0.69
CLSTN3-213ENST00000541953 E9PSI1 815 aa19.38■□□□□ 0.69
CLSTN3-213ENST00000541953 IFIT1P09914 478 aaKnown RBP19.38■□□□□ 0.69
CLSTN3-213ENST00000541953 TCP10Q12799 353 aa19.38■□□□□ 0.69
CLSTN3-213ENST00000541953 FKBP1CQ5VVH2 108 aa19.38■□□□□ 0.69
CLSTN3-213ENST00000541953 HHIPL2Q6UWX4 724 aa19.38■□□□□ 0.69
CLSTN3-213ENST00000541953 ERO1BQ86YB8 467 aa19.38■□□□□ 0.69
CLSTN3-213ENST00000541953 ZFPM1Q8IX07 1006 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms