RNA–Protein interactions for RNA: ENST00000541351.3

YBX3-211, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-211ENST00000541351 CDX2Q99626 313 aaPredicted RBP12.31□□□□□ -0.44
YBX3-211ENST00000541351 LBHD1Q9BQE6 289 aaPredicted RBP12.31□□□□□ -0.44
YBX3-211ENST00000541351 FKBP1AP62942 108 aaKnown RBP12.3□□□□□ -0.44
YBX3-211ENST00000541351 MAP3K12Q12852 859 aa12.3□□□□□ -0.44
YBX3-211ENST00000541351 IRF5Q13568 498 aa12.3□□□□□ -0.44
YBX3-211ENST00000541351 ANKRD2Q9GZV1 360 aa12.3□□□□□ -0.44
YBX3-211ENST00000541351 C11orf49Q9H6J7 331 aa12.3□□□□□ -0.44
YBX3-211ENST00000541351 HCN4Q9Y3Q4 1203 aa12.3□□□□□ -0.44
YBX3-211ENST00000541351 PER1O15534 1290 aaPredicted RBP12.29□□□□□ -0.44
YBX3-211ENST00000541351 FOSL2P15408 326 aa12.29□□□□□ -0.44
YBX3-211ENST00000541351 ZNF428Q96B54 188 aa12.29□□□□□ -0.44
YBX3-211ENST00000541351 C1QTNF1Q9BXJ1 281 aa12.29□□□□□ -0.44
YBX3-211ENST00000541351 MINPP1Q9UNW1 487 aa12.29□□□□□ -0.44
YBX3-211ENST00000541351 ECM29Q5VYK3 1845 aa12.29□□□□□ -0.44
YBX3-211ENST00000541351 SYNGAP1Q96PV0 1343 aa12.29□□□□□ -0.44
YBX3-211ENST00000541351 PDHXO00330 501 aa12.28□□□□□ -0.44
YBX3-211ENST00000541351 IRF6O14896 467 aa12.28□□□□□ -0.44
YBX3-211ENST00000541351 IGHMBP2P38935 993 aaKnown RBP12.28□□□□□ -0.44
YBX3-211ENST00000541351 PPATQ06203 517 aa12.28□□□□□ -0.44
YBX3-211ENST00000541351 NFE2L2Q16236 605 aa12.28□□□□□ -0.44
YBX3-211ENST00000541351 CCDC191Q8NCU4 936 aa12.28□□□□□ -0.44
YBX3-211ENST00000541351 IL27Q8NEV9 243 aa12.28□□□□□ -0.44
YBX3-211ENST00000541351 COA7Q96BR5 231 aa12.28□□□□□ -0.44
YBX3-211ENST00000541351 PRMT6Q96LA8 375 aaPredicted RBP12.28□□□□□ -0.44
YBX3-211ENST00000541351 HYPKQ9NX55 129 aa12.28□□□□□ -0.44
YBX3-211ENST00000541351 DBF4Q9UBU7 674 aaPredicted RBP12.28□□□□□ -0.44
YBX3-211ENST00000541351 MAPK8IP3Q9UPT6 1336 aa12.28□□□□□ -0.44
YBX3-211ENST00000541351 SPTBN5Q9NRC6 3674 aaKnown RBP12.27□□□□□ -0.45
YBX3-211ENST00000541351 TNPO2O14787 897 aaKnown RBP12.27□□□□□ -0.45
YBX3-211ENST00000541351 PCCAP05165 728 aaPredicted RBP12.27□□□□□ -0.45
YBX3-211ENST00000541351 CTGFP29279 349 aa12.27□□□□□ -0.45
YBX3-211ENST00000541351 FLT3LGP49771 235 aa12.27□□□□□ -0.45
YBX3-211ENST00000541351 GOLGA2Q08379 1002 aa12.27□□□□□ -0.45
YBX3-211ENST00000541351 SPDYE2Q495Y8 402 aa12.27□□□□□ -0.45
YBX3-211ENST00000541351 DCAF15Q66K64 600 aa12.27□□□□□ -0.45
YBX3-211ENST00000541351 RIC3Q7Z5B4 369 aa12.27□□□□□ -0.45
YBX3-211ENST00000541351 WRNIP1Q96S55 665 aa12.27□□□□□ -0.45
YBX3-211ENST00000541351 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.27□□□□□ -0.45
YBX3-211ENST00000541351 F8W031 263 aaPredicted RBP12.26□□□□□ -0.45
YBX3-211ENST00000541351 DIS3LQ8TF46 1054 aaKnown RBP12.26□□□□□ -0.45
YBX3-211ENST00000541351 CCDC85AQ96PX6 553 aaPredicted RBP12.26□□□□□ -0.45
YBX3-211ENST00000541351 SEMA6BQ9H3T3 888 aa12.26□□□□□ -0.45
YBX3-211ENST00000541351 CD209Q9NNX6 404 aa12.26□□□□□ -0.45
YBX3-211ENST00000541351 HMX1Q9NP08 348 aaPredicted RBP12.26□□□□□ -0.45
YBX3-211ENST00000541351 PRKAG2Q9UGJ0 569 aa12.26□□□□□ -0.45
YBX3-211ENST00000541351 RAPGEFL1Q9UHV5 662 aa12.26□□□□□ -0.45
YBX3-211ENST00000541351 TAOK2Q9UL54 1235 aa12.26□□□□□ -0.45
YBX3-211ENST00000541351 OTOFQ9HC10 1997 aa12.26□□□□□ -0.45
YBX3-211ENST00000541351 ZSWIM8A7E2V4 1837 aa12.25□□□□□ -0.45
YBX3-211ENST00000541351 HOXB7P09629 217 aa12.25□□□□□ -0.45
YBX3-211ENST00000541351 ELNP15502 786 aa12.25□□□□□ -0.45
YBX3-211ENST00000541351 LMOD3Q0VAK6 560 aa12.25□□□□□ -0.45
YBX3-211ENST00000541351 HDGFL1Q5TGJ6 251 aa12.25□□□□□ -0.45
YBX3-211ENST00000541351 ZNF804AQ7Z570 1209 aa12.25□□□□□ -0.45
YBX3-211ENST00000541351 CWC25Q9NXE8 425 aaPredicted RBP12.25□□□□□ -0.45
YBX3-211ENST00000541351 TMOD2Q9NZR1 351 aa12.25□□□□□ -0.45
YBX3-211ENST00000541351 CHPF2Q9P2E5 772 aa12.25□□□□□ -0.45
YBX3-211ENST00000541351 ZNF70Q9UC06 446 aaPredicted RBP12.25□□□□□ -0.45
YBX3-211ENST00000541351 SERPINA10Q9UK55 444 aa12.25□□□□□ -0.45
YBX3-211ENST00000541351 SNCAIPQ9Y6H5 919 aa12.25□□□□□ -0.45
YBX3-211ENST00000541351 COL2A1P02458 1487 aaPredicted RBP12.25□□□□□ -0.45
YBX3-211ENST00000541351 COL4A1P02462 1669 aa12.25□□□□□ -0.45
YBX3-211ENST00000541351 HMGCRP04035 888 aa12.24□□□□□ -0.45
YBX3-211ENST00000541351 BCRP11274 1271 aa12.24□□□□□ -0.45
YBX3-211ENST00000541351 CTSWP56202 376 aa12.24□□□□□ -0.45
YBX3-211ENST00000541351 MDM2Q00987 491 aaPredicted RBP12.24□□□□□ -0.45
YBX3-211ENST00000541351 CNGB1Q14028 1251 aaPredicted RBP12.24□□□□□ -0.45
YBX3-211ENST00000541351 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.24□□□□□ -0.45
YBX3-211ENST00000541351 MPHOSPH8Q99549 860 aa12.24□□□□□ -0.45
YBX3-211ENST00000541351 GABRQQ9UN88 632 aa12.24□□□□□ -0.45
YBX3-211ENST00000541351 KCNH4Q9UQ05 1017 aa12.24□□□□□ -0.45
YBX3-211ENST00000541351 TXNRD3Q86VQ6 643 aa12.23□□□□□ -0.45
YBX3-211ENST00000541351 ATXN2LQ8WWM7 1075 aaKnown RBP12.23□□□□□ -0.45
YBX3-211ENST00000541351 MYLIPQ8WY64 445 aa12.23□□□□□ -0.45
YBX3-211ENST00000541351 TEPSINQ96N21 525 aa12.23□□□□□ -0.45
YBX3-211ENST00000541351 ALPK3Q96L96 1907 aa12.22□□□□□ -0.45
YBX3-211ENST00000541351 TCP10L2B9ZVM9 353 aa12.22□□□□□ -0.45
YBX3-211ENST00000541351 SMAD3P84022 425 aaKnown RBP12.22□□□□□ -0.45
YBX3-211ENST00000541351 FASTKD5Q7L8L6 764 aaKnown RBP12.22□□□□□ -0.45
YBX3-211ENST00000541351 CERS5Q8N5B7 392 aa12.22□□□□□ -0.45
YBX3-211ENST00000541351 SMCR8Q8TEV9 937 aaPredicted RBP12.22□□□□□ -0.45
YBX3-211ENST00000541351 SNX27Q96L92 541 aa12.22□□□□□ -0.45
YBX3-211ENST00000541351 TMEM39BQ9GZU3 492 aa12.22□□□□□ -0.45
YBX3-211ENST00000541351 CHMP4AQ9BY43 222 aa12.21□□□□□ -0.45
YBX3-211ENST00000541351 ZNF341Q9BYN7 854 aa12.21□□□□□ -0.45
YBX3-211ENST00000541351 TDRD3Q9H7E2 651 aaKnown RBP12.21□□□□□ -0.45
YBX3-211ENST00000541351 OGDHLQ9ULD0 1010 aa12.21□□□□□ -0.45
YBX3-211ENST00000541351 CXCL11O14625 94 aa12.2□□□□□ -0.46
YBX3-211ENST00000541351 DDX58O95786 925 aaKnown RBP12.2□□□□□ -0.46
YBX3-211ENST00000541351 IL1R1P14778 569 aa12.2□□□□□ -0.46
YBX3-211ENST00000541351 C15orf52Q6ZUT6 534 aaKnown RBP12.2□□□□□ -0.46
YBX3-211ENST00000541351 DZIP1LQ8IYY4 767 aaKnown RBP12.2□□□□□ -0.46
YBX3-211ENST00000541351 ZKSCAN4Q969J2 545 aaPredicted RBP12.2□□□□□ -0.46
YBX3-211ENST00000541351 MYD88Q99836 296 aa12.2□□□□□ -0.46
YBX3-211ENST00000541351 TTF2Q9UNY4 1162 aaKnown RBP12.2□□□□□ -0.46
YBX3-211ENST00000541351 SLC45A1Q9Y2W3 748 aa12.2□□□□□ -0.46
YBX3-211ENST00000541351 PCDHAC2Q9Y5I4 1007 aa12.2□□□□□ -0.46
YBX3-211ENST00000541351 PIEZO1Q92508 2521 aa12.19□□□□□ -0.46
YBX3-211ENST00000541351 FAM83AQ86UY5 434 aa12.19□□□□□ -0.46
YBX3-211ENST00000541351 TTLL11Q8NHH1 800 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms