RNA–Protein interactions for RNA: ENST00000541341.5

CHFR-219, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-219ENST00000541341 CCDC171Q6TFL3 1326 aa12.31□□□□□ -0.44
CHFR-219ENST00000541341 C6orf229H3BNL8 230 aa12.3□□□□□ -0.44
CHFR-219ENST00000541341 NEMFO60524 1076 aa12.3□□□□□ -0.44
CHFR-219ENST00000541341 KDM4AO75164 1064 aa12.3□□□□□ -0.44
CHFR-219ENST00000541341 BBOX1O75936 387 aa12.3□□□□□ -0.44
CHFR-219ENST00000541341 EGFRP00533 1210 aa12.3□□□□□ -0.44
CHFR-219ENST00000541341 TUBB4AP04350 444 aa12.3□□□□□ -0.44
CHFR-219ENST00000541341 CCDC192P0DO97 292 aa12.3□□□□□ -0.44
CHFR-219ENST00000541341 DMTNQ08495 405 aa12.3□□□□□ -0.44
CHFR-219ENST00000541341 TBC1D10BQ4KMP7 808 aaPredicted RBP12.3□□□□□ -0.44
CHFR-219ENST00000541341 HSP90AB3PQ58FF7 597 aa12.3□□□□□ -0.44
CHFR-219ENST00000541341 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.3□□□□□ -0.44
CHFR-219ENST00000541341 MICALL2Q8IY33 904 aa12.3□□□□□ -0.44
CHFR-219ENST00000541341 JARID2Q92833 1246 aaPredicted RBP12.3□□□□□ -0.44
CHFR-219ENST00000541341 ZIC5Q96T25 663 aa12.3□□□□□ -0.44
CHFR-219ENST00000541341 NSFL1CQ9UNZ2 370 aaKnown RBP12.3□□□□□ -0.44
CHFR-219ENST00000541341 PAXBP1Q9Y5B6 917 aa12.3□□□□□ -0.44
CHFR-219ENST00000541341 PI4KAP2A4QPH2 592 aa12.29□□□□□ -0.44
CHFR-219ENST00000541341 PI4KAP1Q8N8J0 262 aa12.29□□□□□ -0.44
CHFR-219ENST00000541341 DNAAF4Q8WXU2 420 aa12.29□□□□□ -0.44
CHFR-219ENST00000541341 CCDC85AQ96PX6 553 aaPredicted RBP12.29□□□□□ -0.44
CHFR-219ENST00000541341 RTFDC1Q9BY42 306 aaPredicted RBP12.29□□□□□ -0.44
CHFR-219ENST00000541341 C1orf115Q9H7X2 142 aa12.29□□□□□ -0.44
CHFR-219ENST00000541341 ZDHHC9Q9Y397 364 aa12.29□□□□□ -0.44
CHFR-219ENST00000541341 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.29□□□□□ -0.448e-7■□□□□ 9.6
CHFR-219ENST00000541341 HIP1O00291 1037 aa12.28□□□□□ -0.44
CHFR-219ENST00000541341 PSMD14O00487 310 aa12.28□□□□□ -0.44
CHFR-219ENST00000541341 GPSM2P81274 684 aa12.28□□□□□ -0.44
CHFR-219ENST00000541341 RBM10P98175 930 aaKnown RBP12.28□□□□□ -0.44
CHFR-219ENST00000541341 TRIM28Q13263 835 aaKnown RBP12.28□□□□□ -0.44
CHFR-219ENST00000541341 TNIP1Q15025 636 aa12.28□□□□□ -0.44
CHFR-219ENST00000541341 RNF20Q5VTR2 975 aa12.28□□□□□ -0.44
CHFR-219ENST00000541341 SAPCD2Q86UD0 394 aa12.28□□□□□ -0.44
CHFR-219ENST00000541341 METTL22Q9BUU2 404 aaPredicted RBP12.28□□□□□ -0.44
CHFR-219ENST00000541341 MAP3K2Q9Y2U5 619 aa12.28□□□□□ -0.44
CHFR-219ENST00000541341 TNRC18O15417 2968 aaPredicted RBP12.27□□□□□ -0.44
CHFR-219ENST00000541341 ADM5C9JUS6 153 aa12.27□□□□□ -0.45
CHFR-219ENST00000541341 KIF2AO00139 706 aaPredicted RBP12.27□□□□□ -0.45
CHFR-219ENST00000541341 ZSCAN22P10073 491 aaPredicted RBP12.27□□□□□ -0.45
CHFR-219ENST00000541341 HSPA4P34932 840 aa12.27□□□□□ -0.45
CHFR-219ENST00000541341 ATP8B2P98198 1209 aa12.27□□□□□ -0.45
CHFR-219ENST00000541341 ANKRD1Q15327 319 aa12.27□□□□□ -0.45
CHFR-219ENST00000541341 WASHC4Q2M389 1173 aa12.27□□□□□ -0.45
CHFR-219ENST00000541341 RIC3Q7Z5B4 369 aa12.27□□□□□ -0.45
CHFR-219ENST00000541341 ZGPATQ8N5A5 531 aaKnown RBP12.27□□□□□ -0.45
CHFR-219ENST00000541341 ISCA1Q9BUE6 129 aa12.27□□□□□ -0.45
CHFR-219ENST00000541341 TM6SF1Q9BZW5 370 aa12.27□□□□□ -0.45
CHFR-219ENST00000541341 POLLQ9UGP5 575 aa12.27□□□□□ -0.45
CHFR-219ENST00000541341 SCAF8Q9UPN6 1271 aaKnown RBP12.27□□□□□ -0.45
CHFR-219ENST00000541341 LIMCH1Q9UPQ0 1083 aa12.27□□□□□ -0.45
CHFR-219ENST00000541341 ZNF646O15015 1829 aaPredicted RBP12.26□□□□□ -0.45
CHFR-219ENST00000541341 H7C1D1 291 aa12.26□□□□□ -0.45
CHFR-219ENST00000541341 ECE2O60344 883 aa12.26□□□□□ -0.45
CHFR-219ENST00000541341 CHMLP26374 656 aa12.26□□□□□ -0.45
CHFR-219ENST00000541341 HUNKP57058 714 aa12.26□□□□□ -0.45
CHFR-219ENST00000541341 BEND3Q5T5X7 828 aa12.26□□□□□ -0.45
CHFR-219ENST00000541341 CDC37L1Q7L3B6 337 aa12.26□□□□□ -0.45
CHFR-219ENST00000541341 LINS1Q8NG48 757 aa12.26□□□□□ -0.45
CHFR-219ENST00000541341 GPATCH3Q96I76 525 aa12.26□□□□□ -0.45
CHFR-219ENST00000541341 VPS33BQ9H267 617 aa12.26□□□□□ -0.45
CHFR-219ENST00000541341 ANO2Q9NQ90 1003 aa12.26□□□□□ -0.45
CHFR-219ENST00000541341 SEC31BQ9NQW1 1179 aa12.26□□□□□ -0.45
CHFR-219ENST00000541341 CGNQ9P2M7 1197 aaKnown RBP12.26□□□□□ -0.45
CHFR-219ENST00000541341 SMC3Q9UQE7 1217 aa12.26□□□□□ -0.45
CHFR-219ENST00000541341 ASTN2O75129 1339 aaPredicted RBP12.26□□□□□ -0.45
CHFR-219ENST00000541341 F6X3S4 739 aa12.25□□□□□ -0.45
CHFR-219ENST00000541341 IRS4O14654 1257 aaPredicted RBP12.25□□□□□ -0.45
CHFR-219ENST00000541341 ALDH1L1O75891 902 aa12.25□□□□□ -0.45
CHFR-219ENST00000541341 ADCY5O95622 1261 aa12.25□□□□□ -0.45
CHFR-219ENST00000541341 IGKV5-2P06315 115 aa12.25□□□□□ -0.45
CHFR-219ENST00000541341 GABPB1Q06547 395 aaPredicted RBP12.25□□□□□ -0.45
CHFR-219ENST00000541341 NEXNQ0ZGT2 675 aa12.25□□□□□ -0.45
CHFR-219ENST00000541341 MYD88Q99836 296 aa12.25□□□□□ -0.45
CHFR-219ENST00000541341 PRDM4Q9UKN5 801 aa12.25□□□□□ -0.45
CHFR-219ENST00000541341 ELP1O95163 1332 aa12.25□□□□□ -0.45
CHFR-219ENST00000541341 RTL9Q8NET4 1388 aa12.25□□□□□ -0.45
CHFR-219ENST00000541341 TRIM6-TRIM34B2RNG4 842 aa12.24□□□□□ -0.45
CHFR-219ENST00000541341 STX6O43752 255 aa12.24□□□□□ -0.45
CHFR-219ENST00000541341 PSMA5P28066 241 aa12.24□□□□□ -0.45
CHFR-219ENST00000541341 MAP2K2P36507 400 aa12.24□□□□□ -0.45
CHFR-219ENST00000541341 DGKZQ13574 1117 aa12.24□□□□□ -0.45
CHFR-219ENST00000541341 TTC41PQ6P2S7 1318 aa12.24□□□□□ -0.45
CHFR-219ENST00000541341 CCDC191Q8NCU4 936 aa12.24□□□□□ -0.45
CHFR-219ENST00000541341 MCOLN1Q9GZU1 580 aa12.24□□□□□ -0.45
CHFR-219ENST00000541341 SCAND2PQ9GZW5 306 aaPredicted RBP12.24□□□□□ -0.45
CHFR-219ENST00000541341 OGFRQ9NZT2 677 aa12.24□□□□□ -0.45
CHFR-219ENST00000541341 RBM27Q9P2N5 1060 aaKnown RBP12.24□□□□□ -0.45
CHFR-219ENST00000541341 PGAP2Q9UHJ9 254 aa12.24□□□□□ -0.45
CHFR-219ENST00000541341 UTYO14607 1347 aa12.23□□□□□ -0.45
CHFR-219ENST00000541341 SALL3Q9BXA9 1300 aa12.23□□□□□ -0.45
CHFR-219ENST00000541341 NEURL1BA8MQ27 555 aa12.23□□□□□ -0.45
CHFR-219ENST00000541341 G3V3G9 751 aa12.23□□□□□ -0.45
CHFR-219ENST00000541341 NRDCO43847 1150 aa12.23□□□□□ -0.45
CHFR-219ENST00000541341 UFL1O94874 794 aa12.23□□□□□ -0.45
CHFR-219ENST00000541341 DCAF8Q5TAQ9 597 aa12.23□□□□□ -0.45
CHFR-219ENST00000541341 KRT26Q7Z3Y9 468 aa12.23□□□□□ -0.45
CHFR-219ENST00000541341 TBC1D16Q8TBP0 767 aa12.23□□□□□ -0.45
CHFR-219ENST00000541341 DDX19AQ9NUU7 478 aaKnown RBP12.23□□□□□ -0.45
CHFR-219ENST00000541341 RPAP1Q9BWH6 1393 aaPredicted RBP12.22□□□□□ -0.45
CHFR-219ENST00000541341 RAD50Q92878 1312 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms