RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 CCDC88AQ3V6T2 1871 aa21.21■□□□□ 0.99
CLIP1-215ENST00000541108 G3V3G9 751 aa21.2■□□□□ 0.98
CLIP1-215ENST00000541108 SLC27A2O14975 620 aa21.2■□□□□ 0.98
CLIP1-215ENST00000541108 LDHBP07195 334 aaKnown RBP21.2■□□□□ 0.98
CLIP1-215ENST00000541108 GNAT2P19087 354 aa21.2■□□□□ 0.98
CLIP1-215ENST00000541108 PRDX5P30044 214 aa21.2■□□□□ 0.98
CLIP1-215ENST00000541108 MECOMQ03112 1051 aa21.2■□□□□ 0.98
CLIP1-215ENST00000541108 DCAF8Q5TAQ9 597 aa21.2■□□□□ 0.98
CLIP1-215ENST00000541108 RASEFQ8IZ41 740 aa21.2■□□□□ 0.98
CLIP1-215ENST00000541108 VPS33BQ9H267 617 aa21.2■□□□□ 0.98
CLIP1-215ENST00000541108 SPON1Q9HCB6 807 aa21.2■□□□□ 0.98
CLIP1-215ENST00000541108 CTNNA3Q9UI47 895 aa21.2■□□□□ 0.98
CLIP1-215ENST00000541108 KIAA2012Q0VF49 1180 aa21.19■□□□□ 0.98
CLIP1-215ENST00000541108 DALRD3Q5D0E6 543 aaKnown RBP21.19■□□□□ 0.98
CLIP1-215ENST00000541108 TM6SF1Q9BZW5 370 aa21.19■□□□□ 0.98
CLIP1-215ENST00000541108 DAXXQ9UER7 740 aaPredicted RBP21.19■□□□□ 0.98
CLIP1-215ENST00000541108 SUGT1Q9Y2Z0 365 aa21.19■□□□□ 0.98
CLIP1-215ENST00000541108 ZNF384Q8TF68 577 aa21.18■□□□□ 0.98
CLIP1-215ENST00000541108 RPAP1Q9BWH6 1393 aaPredicted RBP21.18■□□□□ 0.98
CLIP1-215ENST00000541108 FOXP2O15409 715 aa21.18■□□□□ 0.98
CLIP1-215ENST00000541108 ST18O60284 1047 aa21.18■□□□□ 0.98
CLIP1-215ENST00000541108 GSTO1P78417 241 aa21.18■□□□□ 0.98
CLIP1-215ENST00000541108 DZIP1Q86YF9 867 aaKnown RBP21.18■□□□□ 0.98
CLIP1-215ENST00000541108 TBC1D2Q9BYX2 928 aa21.18■□□□□ 0.98
CLIP1-215ENST00000541108 PPP1R1BQ9UD71 204 aaPredicted RBP21.18■□□□□ 0.98
CLIP1-215ENST00000541108 BRCA1P38398 1863 aaKnown RBP21.18■□□□□ 0.98
CLIP1-215ENST00000541108 MAST2Q6P0Q8 1798 aa21.17■□□□□ 0.98
CLIP1-215ENST00000541108 CHD4Q14839 1912 aa21.17■□□□□ 0.98
CLIP1-215ENST00000541108 PATL2C9JE40 543 aaKnown RBP21.17■□□□□ 0.98
CLIP1-215ENST00000541108 MBD4O95243 580 aa21.17■□□□□ 0.98
CLIP1-215ENST00000541108 KRT32Q14532 448 aa21.17■□□□□ 0.98
CLIP1-215ENST00000541108 MFSD14BQ5SR56 506 aa21.17■□□□□ 0.98
CLIP1-215ENST00000541108 ADGRA1Q86SQ6 560 aa21.17■□□□□ 0.98
CLIP1-215ENST00000541108 JAG2Q9Y219 1238 aa21.17■□□□□ 0.98
CLIP1-215ENST00000541108 MAGEB6P1A0A0J9YX57 407 aa21.16■□□□□ 0.98
CLIP1-215ENST00000541108 FGAP02671 866 aa21.16■□□□□ 0.98
CLIP1-215ENST00000541108 PSMA5P28066 241 aa21.16■□□□□ 0.98
CLIP1-215ENST00000541108 GTF2IP78347 998 aa21.16■□□□□ 0.98
CLIP1-215ENST00000541108 ALX1Q15699 326 aa21.16■□□□□ 0.98
CLIP1-215ENST00000541108 DOK7Q18PE1 504 aa21.16■□□□□ 0.98
CLIP1-215ENST00000541108 TTLL5Q6EMB2 1281 aa21.16■□□□□ 0.98
CLIP1-215ENST00000541108 RIOK1Q9BRS2 568 aaKnown RBP21.16■□□□□ 0.98
CLIP1-215ENST00000541108 ZMYM6O95789 1325 aa21.16■□□□□ 0.98
CLIP1-215ENST00000541108 LDHCP07864 332 aa21.15■□□□□ 0.98
CLIP1-215ENST00000541108 CYP21A2P08686 494 aa21.15■□□□□ 0.98
CLIP1-215ENST00000541108 NEK4P51957 841 aa21.15■□□□□ 0.98
CLIP1-215ENST00000541108 HSCBQ8IWL3 235 aa21.15■□□□□ 0.98
CLIP1-215ENST00000541108 FKBP1AP62942 108 aaKnown RBP21.15■□□□□ 0.98
CLIP1-215ENST00000541108 SLF2Q8IX21 1173 aa21.15■□□□□ 0.98
CLIP1-215ENST00000541108 ARMT1Q9H993 441 aa21.15■□□□□ 0.98
CLIP1-215ENST00000541108 IMMTQ16891 758 aaKnown RBP21.14■□□□□ 0.97
CLIP1-215ENST00000541108 STRIP1Q5VSL9 837 aa21.14■□□□□ 0.97
CLIP1-215ENST00000541108 CERS3Q8IU89 383 aa21.14■□□□□ 0.97
CLIP1-215ENST00000541108 LCORLQ8N3X6 602 aa21.14■□□□□ 0.97
CLIP1-215ENST00000541108 MIGA1Q8NAN2 632 aa21.14■□□□□ 0.97
CLIP1-215ENST00000541108 ZSWIM6Q9HCJ5 1215 aa21.14■□□□□ 0.97
CLIP1-215ENST00000541108 ECE2O60344 883 aa21.13■□□□□ 0.97
CLIP1-215ENST00000541108 APPP05067 770 aa21.13■□□□□ 0.97
CLIP1-215ENST00000541108 MCM2P49736 904 aa21.13■□□□□ 0.97
CLIP1-215ENST00000541108 AOC3Q16853 763 aa21.13■□□□□ 0.97
CLIP1-215ENST00000541108 FAM163AQ96GL9 167 aaPredicted RBP21.13■□□□□ 0.97
CLIP1-215ENST00000541108 NACAP1Q9BZK3 213 aa21.13■□□□□ 0.97
CLIP1-215ENST00000541108 DBNDD1Q9H9R9 158 aa21.13■□□□□ 0.97
CLIP1-215ENST00000541108 PPIP5K2O43314 1243 aa21.12■□□□□ 0.97
CLIP1-215ENST00000541108 ADCK5Q3MIX3 580 aa21.12■□□□□ 0.97
CLIP1-215ENST00000541108 KLHL34Q8N239 644 aa21.12■□□□□ 0.97
CLIP1-215ENST00000541108 SLC4A4Q9Y6R1 1079 aa21.12■□□□□ 0.97
CLIP1-215ENST00000541108 GSG1L2A8MUP6 293 aa21.12■□□□□ 0.97
CLIP1-215ENST00000541108 PPP4CP60510 307 aa21.12■□□□□ 0.97
CLIP1-215ENST00000541108 IFNL3Q8IZI9 196 aa21.12■□□□□ 0.97
CLIP1-215ENST00000541108 JAKMIP1Q96N16 626 aaKnown RBP21.12■□□□□ 0.97
CLIP1-215ENST00000541108 ZNF213O14771 459 aa21.11■□□□□ 0.97
CLIP1-215ENST00000541108 BAG3O95817 575 aa21.11■□□□□ 0.97
CLIP1-215ENST00000541108 CASTP20810 708 aaKnown RBP21.11■□□□□ 0.97
CLIP1-215ENST00000541108 GRIK5Q16478 980 aa21.11■□□□□ 0.97
CLIP1-215ENST00000541108 GIMAP6Q6P9H5 292 aa21.11■□□□□ 0.97
CLIP1-215ENST00000541108 RUFY3Q7L099 469 aa21.11■□□□□ 0.97
CLIP1-215ENST00000541108 UPF3BQ9BZI7 483 aaKnown RBP21.11■□□□□ 0.97
CLIP1-215ENST00000541108 CYP46A1Q9Y6A2 500 aa21.11■□□□□ 0.97
CLIP1-215ENST00000541108 K7ELQ4 463 aaPredicted RBP21.1■□□□□ 0.97
CLIP1-215ENST00000541108 CD2BP2O95400 341 aaKnown RBP21.1■□□□□ 0.97
CLIP1-215ENST00000541108 HMGB1P09429 215 aaKnown RBP21.1■□□□□ 0.97
CLIP1-215ENST00000541108 NEK1Q96PY6 1258 aa21.1■□□□□ 0.97
CLIP1-215ENST00000541108 NAPBQ9H115 298 aa21.1■□□□□ 0.97
CLIP1-215ENST00000541108 MROH7-TTC4A0A0A0MT08 1334 aa21.1■□□□□ 0.97
CLIP1-215ENST00000541108 USP17L3A6NCW0 530 aa21.09■□□□□ 0.97
CLIP1-215ENST00000541108 USP17L4A6NCW7 530 aa21.09■□□□□ 0.97
CLIP1-215ENST00000541108 USP17L1Q7RTZ2 530 aa21.09■□□□□ 0.97
CLIP1-215ENST00000541108 NOL10Q9BSC4 688 aaKnown RBP21.09■□□□□ 0.97
CLIP1-215ENST00000541108 AATFQ9NY61 560 aaKnown RBP eCLIP21.09■□□□□ 0.97
CLIP1-215ENST00000541108 DYNLL1P63167 89 aaKnown RBP21.09■□□□□ 0.97
CLIP1-215ENST00000541108 BLOC1S2Q6QNY1 142 aa21.09■□□□□ 0.97
CLIP1-215ENST00000541108 CERS5Q8N5B7 392 aa21.09■□□□□ 0.97
CLIP1-215ENST00000541108 TTC14Q96N46 770 aa21.09■□□□□ 0.97
CLIP1-215ENST00000541108 MRIQ9BWK5 157 aa21.09■□□□□ 0.97
CLIP1-215ENST00000541108 CRNKL1Q9BZJ0 848 aaKnown RBP21.09■□□□□ 0.97
CLIP1-215ENST00000541108 ALDH8A1Q9H2A2 487 aaPredicted RBP21.09■□□□□ 0.97
CLIP1-215ENST00000541108 BCS1LQ9Y276 419 aa21.09■□□□□ 0.97
CLIP1-215ENST00000541108 TAF6LQ9Y6J9 622 aa21.09■□□□□ 0.97
CLIP1-215ENST00000541108 MYH2Q9UKX2 1941 aa21.08■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms