RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 USP17L1Q7RTZ2 530 aa12.8□□□□□ -0.36
VPS33A-204ENST00000540669 ZGPATQ8N5A5 531 aaKnown RBP12.8□□□□□ -0.36
VPS33A-204ENST00000540669 NSUN4Q96CB9 384 aaKnown RBP12.8□□□□□ -0.36
VPS33A-204ENST00000540669 IL25Q9H293 177 aa12.8□□□□□ -0.36
VPS33A-204ENST00000540669 NAV1Q8NEY1 1877 aa12.79□□□□□ -0.36
VPS33A-204ENST00000540669 CHGBP05060 677 aa12.79□□□□□ -0.36
VPS33A-204ENST00000540669 PDE6AP16499 860 aa12.79□□□□□ -0.36
VPS33A-204ENST00000540669 CHMLP26374 656 aa12.79□□□□□ -0.36
VPS33A-204ENST00000540669 UBE3CQ15386 1083 aa12.79□□□□□ -0.36
VPS33A-204ENST00000540669 MFSD14BQ5SR56 506 aa12.79□□□□□ -0.36
VPS33A-204ENST00000540669 ZMYM1Q5SVZ6 1142 aa12.79□□□□□ -0.36
VPS33A-204ENST00000540669 RSBN1LQ6PCB5 846 aaPredicted RBP12.79□□□□□ -0.36
VPS33A-204ENST00000540669 TBC1D9Q6ZT07 1266 aa12.79□□□□□ -0.36
VPS33A-204ENST00000540669 FAM163AQ96GL9 167 aaPredicted RBP12.79□□□□□ -0.36
VPS33A-204ENST00000540669 ZBED3Q96IU2 234 aaPredicted RBP12.79□□□□□ -0.36
VPS33A-204ENST00000540669 GPBP1L1Q9HC44 474 aaPredicted RBP12.79□□□□□ -0.36
VPS33A-204ENST00000540669 RAD50Q92878 1312 aa12.79□□□□□ -0.36
VPS33A-204ENST00000540669 PSMD14O00487 310 aa12.78□□□□□ -0.36
VPS33A-204ENST00000540669 FOXP2O15409 715 aa12.78□□□□□ -0.36
VPS33A-204ENST00000540669 CDC45O75419 566 aa12.78□□□□□ -0.36
VPS33A-204ENST00000540669 MAP4K4O95819 1239 aaPredicted RBP12.78□□□□□ -0.36
VPS33A-204ENST00000540669 ZFYP08048 801 aaPredicted RBP12.78□□□□□ -0.36
VPS33A-204ENST00000540669 HDLBPQ00341 1268 aaKnown RBP12.78□□□□□ -0.36
VPS33A-204ENST00000540669 C9orf131Q5VYM1 1079 aa12.78□□□□□ -0.36
VPS33A-204ENST00000540669 TTLL5Q6EMB2 1281 aa12.78□□□□□ -0.36
VPS33A-204ENST00000540669 ADGRA1Q86SQ6 560 aa12.78□□□□□ -0.36
VPS33A-204ENST00000540669 AGBL3Q8NEM8 1001 aa12.78□□□□□ -0.36
VPS33A-204ENST00000540669 MRIQ9BWK5 157 aa12.78□□□□□ -0.36
VPS33A-204ENST00000540669 MAST3O60307 1309 aa12.78□□□□□ -0.36
VPS33A-204ENST00000540669 SIPA1L1O43166 1804 aa12.78□□□□□ -0.36
VPS33A-204ENST00000540669 A0A0D9SFI3 127 aa12.77□□□□□ -0.37
VPS33A-204ENST00000540669 RPS12P25398 132 aaKnown RBP12.77□□□□□ -0.37
VPS33A-204ENST00000540669 MMP14P50281 582 aa12.77□□□□□ -0.37
VPS33A-204ENST00000540669 ZNF280AP59817 542 aaPredicted RBP12.77□□□□□ -0.37
VPS33A-204ENST00000540669 MECOMQ03112 1051 aa12.77□□□□□ -0.37
VPS33A-204ENST00000540669 CHAF1AQ13111 956 aaPredicted RBP12.77□□□□□ -0.37
VPS33A-204ENST00000540669 CIAPIN1Q6FI81 312 aa12.77□□□□□ -0.37
VPS33A-204ENST00000540669 DPY19L2Q6NUT2 758 aa12.77□□□□□ -0.37
VPS33A-204ENST00000540669 JDP2Q8WYK2 163 aa12.77□□□□□ -0.37
VPS33A-204ENST00000540669 APPBP2Q92624 585 aa12.77□□□□□ -0.37
VPS33A-204ENST00000540669 RIOK1Q9BRS2 568 aaKnown RBP12.77□□□□□ -0.37
VPS33A-204ENST00000540669 FSD1Q9BTV5 496 aa12.77□□□□□ -0.37
VPS33A-204ENST00000540669 MXD3Q9BW11 206 aa12.77□□□□□ -0.37
VPS33A-204ENST00000540669 JAG2Q9Y219 1238 aa12.77□□□□□ -0.37
VPS33A-204ENST00000540669 HIP1O00291 1037 aa12.76□□□□□ -0.37
VPS33A-204ENST00000540669 RNF113AO15541 343 aaKnown RBP12.76□□□□□ -0.37
VPS33A-204ENST00000540669 SGSM2O43147 1006 aa12.76□□□□□ -0.37
VPS33A-204ENST00000540669 MAP3K12Q12852 859 aa12.76□□□□□ -0.37
VPS33A-204ENST00000540669 SPTY2D1Q68D10 685 aaPredicted RBP12.76□□□□□ -0.37
VPS33A-204ENST00000540669 MTMR14Q8NCE2 650 aa12.76□□□□□ -0.37
VPS33A-204ENST00000540669 DPF2Q92785 391 aa12.76□□□□□ -0.37
VPS33A-204ENST00000540669 L3MBTL3Q96JM7 780 aaPredicted RBP12.76□□□□□ -0.37
VPS33A-204ENST00000540669 BCL11AQ9H165 835 aa12.76□□□□□ -0.37
VPS33A-204ENST00000540669 MROH7-TTC4A0A0A0MT08 1334 aa12.76□□□□□ -0.37
VPS33A-204ENST00000540669 COL2A1P02458 1487 aaPredicted RBP12.76□□□□□ -0.37
VPS33A-204ENST00000540669 TRIM6-TRIM34B2RNG4 842 aa12.75□□□□□ -0.37
VPS33A-204ENST00000540669 IDH1O75874 414 aaKnown RBP12.75□□□□□ -0.37
VPS33A-204ENST00000540669 RAD17O75943 681 aa12.75□□□□□ -0.37
VPS33A-204ENST00000540669 LDHBP07195 334 aaKnown RBP12.75□□□□□ -0.37
VPS33A-204ENST00000540669 SCNN1DP51172 638 aa12.75□□□□□ -0.37
VPS33A-204ENST00000540669 PPP4CP60510 307 aa12.75□□□□□ -0.37
VPS33A-204ENST00000540669 NMIQ13287 307 aaPredicted RBP12.75□□□□□ -0.37
VPS33A-204ENST00000540669 SLFNL1Q499Z3 407 aa12.75□□□□□ -0.37
VPS33A-204ENST00000540669 HHIPL2Q6UWX4 724 aa12.75□□□□□ -0.37
VPS33A-204ENST00000540669 ERICH6Q7L0X2 663 aa12.75□□□□□ -0.37
VPS33A-204ENST00000540669 GPC2Q8N158 579 aa12.75□□□□□ -0.37
VPS33A-204ENST00000540669 ZNF784Q8NCA9 323 aaPredicted RBP12.75□□□□□ -0.37
VPS33A-204ENST00000540669 OSBP2Q969R2 916 aa12.75□□□□□ -0.37
VPS33A-204ENST00000540669 FAM227BQ96M60 508 aa12.75□□□□□ -0.37
VPS33A-204ENST00000540669 ESYT1Q9BSJ8 1104 aa12.75□□□□□ -0.37
VPS33A-204ENST00000540669 PAPPA2Q9BXP8 1791 aa12.75□□□□□ -0.37
VPS33A-204ENST00000540669 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.75□□□□□ -0.37
VPS33A-204ENST00000540669 ZNF532Q9HCE3 1301 aa12.75□□□□□ -0.37
VPS33A-204ENST00000540669 SERPINA10Q9UK55 444 aa12.75□□□□□ -0.37
VPS33A-204ENST00000540669 DAGLAQ9Y4D2 1042 aa12.75□□□□□ -0.37
VPS33A-204ENST00000540669 ZMYM6O95789 1325 aa12.74□□□□□ -0.37
VPS33A-204ENST00000540669 GPR75-ASB3A0A0A6YYF3 556 aa12.74□□□□□ -0.37
VPS33A-204ENST00000540669 FRAT2O75474 233 aaPredicted RBP12.74□□□□□ -0.37
VPS33A-204ENST00000540669 RHBDL3P58872 404 aa12.74□□□□□ -0.37
VPS33A-204ENST00000540669 TNIP1Q15025 636 aa12.74□□□□□ -0.37
VPS33A-204ENST00000540669 DIXDC1Q155Q3 683 aa12.74□□□□□ -0.37
VPS33A-204ENST00000540669 SLC9C2Q5TAH2 1124 aa12.74□□□□□ -0.37
VPS33A-204ENST00000540669 ZSCAN25Q6NSZ9 544 aa12.74□□□□□ -0.37
VPS33A-204ENST00000540669 ZNF589Q86UQ0 364 aaPredicted RBP12.74□□□□□ -0.37
VPS33A-204ENST00000540669 MAGEB6Q8N7X4 407 aa12.74□□□□□ -0.37
VPS33A-204ENST00000540669 ZNF526Q8TF50 670 aaPredicted RBP12.74□□□□□ -0.37
VPS33A-204ENST00000540669 RILPL2Q969X0 211 aa12.74□□□□□ -0.37
VPS33A-204ENST00000540669 ZDHHC15Q96MV8 337 aa12.74□□□□□ -0.37
VPS33A-204ENST00000540669 HELLSQ9NRZ9 838 aa12.74□□□□□ -0.37
VPS33A-204ENST00000540669 ABCF2Q9UG63 623 aa12.74□□□□□ -0.37
VPS33A-204ENST00000540669 BAZ2AQ9UIF9 1905 aaKnown RBP12.73□□□□□ -0.37
VPS33A-204ENST00000540669 G3V3G9 751 aa12.73□□□□□ -0.37
VPS33A-204ENST00000540669 M0R2C6 588 aa12.73□□□□□ -0.37
VPS33A-204ENST00000540669 EPB41L2O43491 1005 aaKnown RBP12.73□□□□□ -0.37
VPS33A-204ENST00000540669 LRRFIP1Q32MZ4 808 aaKnown RBP12.73□□□□□ -0.37
VPS33A-204ENST00000540669 DCAF8Q5TAQ9 597 aa12.73□□□□□ -0.37
VPS33A-204ENST00000540669 APOBEC3HQ6NTF7 200 aaKnown RBP12.73□□□□□ -0.37
VPS33A-204ENST00000540669 SEC62Q99442 399 aaKnown RBP12.73□□□□□ -0.37
VPS33A-204ENST00000540669 PUS7LQ9H0K6 701 aaKnown RBP12.73□□□□□ -0.37
VPS33A-204ENST00000540669 LRP2BPQ9P2M1 347 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms