RNA–Protein interactions for RNA: ENST00000540663.5

SYNE1-238, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 776 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-238ENST00000540663 CHMP4BQ9H444 224 aaKnown RBP14.61□□□□□ -0.07
SYNE1-238ENST00000540663 SALL1Q9NSC2 1324 aa14.61□□□□□ -0.07
SYNE1-238ENST00000540663 A0A1B0GUL7 405 aa14.6□□□□□ -0.07
SYNE1-238ENST00000540663 CLRN2A0PK11 232 aa14.6□□□□□ -0.07
SYNE1-238ENST00000540663 PHKA1P46020 1223 aa14.6□□□□□ -0.07
SYNE1-238ENST00000540663 CTCFP49711 727 aaPredicted RBP14.6□□□□□ -0.07
SYNE1-238ENST00000540663 ZNF157P51786 506 aaPredicted RBP14.6□□□□□ -0.07
SYNE1-238ENST00000540663 CCDC102BQ68D86 513 aa14.6□□□□□ -0.07
SYNE1-238ENST00000540663 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.6□□□□□ -0.07
SYNE1-238ENST00000540663 ZDHHC15Q96MV8 337 aa14.6□□□□□ -0.07
SYNE1-238ENST00000540663 BEGAINQ9BUH8 593 aa14.6□□□□□ -0.07
SYNE1-238ENST00000540663 VEZTQ9HBM0 779 aa14.6□□□□□ -0.07
SYNE1-238ENST00000540663 SCAF8Q9UPN6 1271 aaKnown RBP14.6□□□□□ -0.07
SYNE1-238ENST00000540663 PCDHAC2Q9Y5I4 1007 aa14.6□□□□□ -0.07
SYNE1-238ENST00000540663 FOXN1O15353 648 aa14.59□□□□□ -0.07
SYNE1-238ENST00000540663 CA12O43570 354 aa14.59□□□□□ -0.07
SYNE1-238ENST00000540663 AOC2O75106 756 aa14.59□□□□□ -0.07
SYNE1-238ENST00000540663 SLC10A3P09131 477 aa14.59□□□□□ -0.07
SYNE1-238ENST00000540663 ADORA1P30542 326 aa14.59□□□□□ -0.07
SYNE1-238ENST00000540663 TIMM10P62072 90 aa14.59□□□□□ -0.07
SYNE1-238ENST00000540663 GRIK5Q16478 980 aa14.59□□□□□ -0.07
SYNE1-238ENST00000540663 SUPT20HL1Q3ZLR7 823 aa14.59□□□□□ -0.07
SYNE1-238ENST00000540663 PRAMEF18Q5VWM3 479 aa14.59□□□□□ -0.07
SYNE1-238ENST00000540663 HHIPL2Q6UWX4 724 aa14.59□□□□□ -0.07
SYNE1-238ENST00000540663 ARMC9Q7Z3E5 817 aa14.59□□□□□ -0.07
SYNE1-238ENST00000540663 ZGPATQ8N5A5 531 aaKnown RBP14.59□□□□□ -0.07
SYNE1-238ENST00000540663 XAGE2Q96GT9 111 aa14.59□□□□□ -0.07
SYNE1-238ENST00000540663 C1orf115Q9H7X2 142 aa14.59□□□□□ -0.07
SYNE1-238ENST00000540663 GPR108Q9NPR9 543 aa14.59□□□□□ -0.07
SYNE1-238ENST00000540663 ZNF70Q9UC06 446 aaPredicted RBP14.59□□□□□ -0.07
SYNE1-238ENST00000540663 DDX19BQ9UMR2 479 aa14.59□□□□□ -0.07
SYNE1-238ENST00000540663 FAM155AB1AL88 458 aaPredicted RBP14.58□□□□□ -0.08
SYNE1-238ENST00000540663 LDHBP07195 334 aaKnown RBP14.58□□□□□ -0.08
SYNE1-238ENST00000540663 OS9Q13438 667 aaPredicted RBP14.58□□□□□ -0.08
SYNE1-238ENST00000540663 TTLL12Q14166 644 aaPredicted RBP14.58□□□□□ -0.08
SYNE1-238ENST00000540663 GORABQ5T7V8 394 aa14.58□□□□□ -0.08
SYNE1-238ENST00000540663 REM2Q8IYK8 340 aaPredicted RBP14.58□□□□□ -0.08
SYNE1-238ENST00000540663 TDRD3Q9H7E2 651 aaKnown RBP14.58□□□□□ -0.08
SYNE1-238ENST00000540663 NOP58Q9Y2X3 529 aaKnown RBP14.58□□□□□ -0.08
SYNE1-238ENST00000540663 UNCXA6NJT0 531 aa14.57□□□□□ -0.08
SYNE1-238ENST00000540663 PPP1R12BO60237 982 aaPredicted RBP14.57□□□□□ -0.08
SYNE1-238ENST00000540663 SURF6O75683 361 aaKnown RBP14.57□□□□□ -0.08
SYNE1-238ENST00000540663 TNNI2P48788 182 aa14.57□□□□□ -0.08
SYNE1-238ENST00000540663 PDE3AQ14432 1141 aa14.57□□□□□ -0.08
SYNE1-238ENST00000540663 RASA3Q14644 834 aa14.57□□□□□ -0.08
SYNE1-238ENST00000540663 FKBP1CQ5VVH2 108 aa14.57□□□□□ -0.08
SYNE1-238ENST00000540663 CEP85Q6P2H3 762 aa14.57□□□□□ -0.08
SYNE1-238ENST00000540663 NEUROD6Q96NK8 337 aa14.57□□□□□ -0.08
SYNE1-238ENST00000540663 PRDM10Q9NQV6 1147 aa14.57□□□□□ -0.08
SYNE1-238ENST00000540663 TMOD2Q9NZR1 351 aa14.57□□□□□ -0.08
SYNE1-238ENST00000540663 AOX1Q06278 1338 aa14.57□□□□□ -0.08
SYNE1-238ENST00000540663 UBE2Q2LH0YL09 131 aa14.56□□□□□ -0.08
SYNE1-238ENST00000540663 RASGRF1Q13972 1273 aa14.56□□□□□ -0.08
SYNE1-238ENST00000540663 MAP3K11Q16584 847 aa14.56□□□□□ -0.08
SYNE1-238ENST00000540663 SPTY2D1Q68D10 685 aaPredicted RBP14.56□□□□□ -0.08
SYNE1-238ENST00000540663 RASAL3Q86YV0 1011 aa14.56□□□□□ -0.08
SYNE1-238ENST00000540663 UQCRFS1P1P0C7P4 283 aa14.55□□□□□ -0.08
SYNE1-238ENST00000540663 ARID4AP29374 1257 aaPredicted RBP14.55□□□□□ -0.08
SYNE1-238ENST00000540663 PRDX5P30044 214 aa14.55□□□□□ -0.08
SYNE1-238ENST00000540663 HSP90AB4PQ58FF6 505 aa14.55□□□□□ -0.08
SYNE1-238ENST00000540663 LDLRAD1Q5T700 205 aa14.55□□□□□ -0.08
SYNE1-238ENST00000540663 APOBEC3HQ6NTF7 200 aaKnown RBP14.55□□□□□ -0.08
SYNE1-238ENST00000540663 MOB2Q70IA6 237 aa14.55□□□□□ -0.08
SYNE1-238ENST00000540663 ERC1Q8IUD2 1116 aa14.55□□□□□ -0.08
SYNE1-238ENST00000540663 SLF2Q8IX21 1173 aa14.55□□□□□ -0.08
SYNE1-238ENST00000540663 ZBTB40Q9NUA8 1239 aa14.55□□□□□ -0.08
SYNE1-238ENST00000540663 COG6Q9Y2V7 657 aa14.55□□□□□ -0.08
SYNE1-238ENST00000540663 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.55□□□□□ -0.08
SYNE1-238ENST00000540663 SSC5DA1L4H1 1573 aa14.55□□□□□ -0.08
SYNE1-238ENST00000540663 HMMRO75330 724 aa14.54□□□□□ -0.08
SYNE1-238ENST00000540663 HSPA8P11142 646 aaKnown RBP14.54□□□□□ -0.08
SYNE1-238ENST00000540663 TNNI3KQ59H18 835 aa14.54□□□□□ -0.08
SYNE1-238ENST00000540663 NBPF12Q5TAG4 269 aaPredicted RBP14.54□□□□□ -0.08
SYNE1-238ENST00000540663 COL13A1Q5TAT6 717 aaPredicted RBP14.54□□□□□ -0.08
SYNE1-238ENST00000540663 FAM83AQ86UY5 434 aa14.54□□□□□ -0.08
SYNE1-238ENST00000540663 RPAP2Q8IXW5 612 aaPredicted RBP14.54□□□□□ -0.08
SYNE1-238ENST00000540663 HOOK2Q96ED9 719 aa14.54□□□□□ -0.08
SYNE1-238ENST00000540663 ANGEL1Q9UNK9 670 aaKnown RBP14.54□□□□□ -0.08
SYNE1-238ENST00000540663 DAGLAQ9Y4D2 1042 aa14.54□□□□□ -0.08
SYNE1-238ENST00000540663 FPGT-TNNI3KV9GXZ4 949 aa14.54□□□□□ -0.08
SYNE1-238ENST00000540663 RPAP1Q9BWH6 1393 aaPredicted RBP14.53□□□□□ -0.08
SYNE1-238ENST00000540663 TCP10L2B9ZVM9 353 aa14.53□□□□□ -0.08
SYNE1-238ENST00000540663 IREB2P48200 963 aaKnown RBP14.53□□□□□ -0.08
SYNE1-238ENST00000540663 KIF23Q02241 960 aaPredicted RBP14.53□□□□□ -0.08
SYNE1-238ENST00000540663 DZIP1Q86YF9 867 aaKnown RBP14.53□□□□□ -0.08
SYNE1-238ENST00000540663 SPATA5Q8NB90 893 aa14.53□□□□□ -0.08
SYNE1-238ENST00000540663 SAGE1Q9NXZ1 904 aa14.53□□□□□ -0.08
SYNE1-238ENST00000540663 HMG20BQ9P0W2 317 aa14.53□□□□□ -0.08
SYNE1-238ENST00000540663 GAKO14976 1311 aa14.52□□□□□ -0.08
SYNE1-238ENST00000540663 LBX1P52954 281 aa14.52□□□□□ -0.09
SYNE1-238ENST00000540663 PRKG1Q13976 671 aa14.52□□□□□ -0.09
SYNE1-238ENST00000540663 DIXDC1Q155Q3 683 aa14.52□□□□□ -0.09
SYNE1-238ENST00000540663 CCDC158Q5M9N0 1113 aa14.52□□□□□ -0.09
SYNE1-238ENST00000540663 FAM163AQ96GL9 167 aaPredicted RBP14.52□□□□□ -0.09
SYNE1-238ENST00000540663 TEPSINQ96N21 525 aa14.52□□□□□ -0.09
SYNE1-238ENST00000540663 ZIC5Q96T25 663 aa14.52□□□□□ -0.09
SYNE1-238ENST00000540663 TMEM39BQ9GZU3 492 aa14.52□□□□□ -0.09
SYNE1-238ENST00000540663 ABCF2Q9UG63 623 aa14.52□□□□□ -0.09
SYNE1-238ENST00000540663 IGSF3O75054 1194 aa14.51□□□□□ -0.09
SYNE1-238ENST00000540663 GSTO1P78417 241 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms