RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 ADD2P35612 726 aa19.78■□□□□ 0.76
USP28-208ENST00000540438 STK38Q15208 465 aa19.78■□□□□ 0.76
USP28-208ENST00000540438 MB21D2Q8IYB1 491 aaPredicted RBP19.78■□□□□ 0.76
USP28-208ENST00000540438 MARCH10Q8NA82 808 aaPredicted RBP19.78■□□□□ 0.76
USP28-208ENST00000540438 PKD1L3Q7Z443 1732 aa19.77■□□□□ 0.76
USP28-208ENST00000540438 NDUFA8P51970 172 aa19.77■□□□□ 0.76
USP28-208ENST00000540438 CFAP45Q9UL16 551 aa19.77■□□□□ 0.76
USP28-208ENST00000540438 BAZ2BQ9UIF8 2168 aaKnown RBP19.77■□□□□ 0.76
USP28-208ENST00000540438 FILIP1Q7Z7B0 1213 aa19.77■□□□□ 0.76
USP28-208ENST00000540438 GNL2Q13823 731 aaKnown RBP19.76■□□□□ 0.75
USP28-208ENST00000540438 CCDC73Q6ZRK6 1079 aa19.76■□□□□ 0.75
USP28-208ENST00000540438 VGLL2Q8N8G2 317 aa19.76■□□□□ 0.75
USP28-208ENST00000540438 NUP133Q8WUM0 1156 aa19.76■□□□□ 0.75
USP28-208ENST00000540438 TEX13AQ9BXU3 409 aaPredicted RBP19.76■□□□□ 0.75
USP28-208ENST00000540438 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.76■□□□□ 0.751e-6■■■□□ 14.8
USP28-208ENST00000540438 ALDH8A1Q9H2A2 487 aaPredicted RBP19.76■□□□□ 0.75
USP28-208ENST00000540438 LRP2BPQ9P2M1 347 aa19.76■□□□□ 0.75
USP28-208ENST00000540438 CTNNA3Q9UI47 895 aa19.76■□□□□ 0.75
USP28-208ENST00000540438 FAM98CQ17RN3 349 aaKnown RBP19.76■□□□□ 0.75
USP28-208ENST00000540438 INTS5Q6P9B9 1019 aaKnown RBP19.76■□□□□ 0.75
USP28-208ENST00000540438 LCORLQ8N3X6 602 aa19.76■□□□□ 0.75
USP28-208ENST00000540438 SPATA5Q8NB90 893 aa19.76■□□□□ 0.75
USP28-208ENST00000540438 CLIC6Q96NY7 704 aa19.76■□□□□ 0.75
USP28-208ENST00000540438 EPB41L4AQ9HCS5 686 aaPredicted RBP19.76■□□□□ 0.75
USP28-208ENST00000540438 LOC102724428A0A0B4J2F2 783 aa19.75■□□□□ 0.75
USP28-208ENST00000540438 GTF2E1P29083 439 aaPredicted RBP19.75■□□□□ 0.75
USP28-208ENST00000540438 SIK1P57059 783 aa19.75■□□□□ 0.75
USP28-208ENST00000540438 TJP1Q07157 1748 aa19.75■□□□□ 0.75
USP28-208ENST00000540438 KINO60870 393 aaKnown RBP19.75■□□□□ 0.75
USP28-208ENST00000540438 GUCY1A2P33402 732 aa19.75■□□□□ 0.75
USP28-208ENST00000540438 TRIM28Q13263 835 aaKnown RBP19.75■□□□□ 0.75
USP28-208ENST00000540438 MTMR7Q9Y216 660 aa19.75■□□□□ 0.75
USP28-208ENST00000540438 MYO5AQ9Y4I1 1855 aaKnown RBP19.74■□□□□ 0.75
USP28-208ENST00000540438 METAP2P50579 478 aaKnown RBP eCLIP19.74■□□□□ 0.75
USP28-208ENST00000540438 CCDC144BQ3MJ40 725 aa19.74■□□□□ 0.75
USP28-208ENST00000540438 HS1BP3Q53T59 392 aa19.74■□□□□ 0.75
USP28-208ENST00000540438 NAPBQ9H115 298 aa19.74■□□□□ 0.75
USP28-208ENST00000540438 KCNJ14Q9UNX9 436 aa19.74■□□□□ 0.75
USP28-208ENST00000540438 ELP1O95163 1332 aa19.74■□□□□ 0.75
USP28-208ENST00000540438 TOGARAM1Q9Y4F4 1720 aa19.74■□□□□ 0.75
USP28-208ENST00000540438 TDO2P48775 406 aa19.74■□□□□ 0.75
USP28-208ENST00000540438 SNW1Q13573 536 aaKnown RBP19.74■□□□□ 0.75
USP28-208ENST00000540438 UVSSAQ2YD98 709 aa19.74■□□□□ 0.75
USP28-208ENST00000540438 ADGRA1Q86SQ6 560 aa19.74■□□□□ 0.75
USP28-208ENST00000540438 ZSCAN16Q9H4T2 348 aaPredicted RBP19.74■□□□□ 0.75
USP28-208ENST00000540438 ZSWIM5Q9P217 1185 aa19.74■□□□□ 0.75
USP28-208ENST00000540438 TNS2Q63HR2 1409 aa19.73■□□□□ 0.75
USP28-208ENST00000540438 HMGN5P82970 282 aaKnown RBP19.73■□□□□ 0.75
USP28-208ENST00000540438 TMEM67Q5HYA8 995 aa19.73■□□□□ 0.75
USP28-208ENST00000540438 DDX19AQ9NUU7 478 aaKnown RBP19.73■□□□□ 0.75
USP28-208ENST00000540438 IFIT3O14879 490 aaKnown RBP19.73■□□□□ 0.75
USP28-208ENST00000540438 KLRK1P26718 216 aa19.73■□□□□ 0.75
USP28-208ENST00000540438 ZNF274Q96GC6 653 aaPredicted RBP19.73■□□□□ 0.75
USP28-208ENST00000540438 ALG1Q9BT22 464 aa19.73■□□□□ 0.75
USP28-208ENST00000540438 SLC26A6Q9BXS9 759 aa19.73■□□□□ 0.75
USP28-208ENST00000540438 AOPEPQ8N6M6 819 aa19.73■□□□□ 0.75
USP28-208ENST00000540438 C16orf45Q96MC5 204 aaPredicted RBP19.73■□□□□ 0.75
USP28-208ENST00000540438 SLC4A4Q9Y6R1 1079 aa19.73■□□□□ 0.75
USP28-208ENST00000540438 BCL9O00512 1426 aa19.72■□□□□ 0.75
USP28-208ENST00000540438 BECN2A8MW95 431 aa19.72■□□□□ 0.75
USP28-208ENST00000540438 PUM3Q15397 648 aaKnown RBP19.72■□□□□ 0.75
USP28-208ENST00000540438 STRBPQ96SI9 672 aaKnown RBP19.72■□□□□ 0.75
USP28-208ENST00000540438 CCDC87Q9NVE4 849 aa19.72■□□□□ 0.75
USP28-208ENST00000540438 RAI14Q9P0K7 980 aa19.72■□□□□ 0.75
USP28-208ENST00000540438 LMTK3Q96Q04 1460 aa19.72■□□□□ 0.75
USP28-208ENST00000540438 UTP14AQ9BVJ6 771 aaKnown RBP19.72■□□□□ 0.75
USP28-208ENST00000540438 RCOR1Q9UKL0 485 aa19.72■□□□□ 0.75
USP28-208ENST00000540438 LAMA4Q16363 1823 aa19.71■□□□□ 0.75
USP28-208ENST00000540438 SYNE3Q6ZMZ3 975 aa19.71■□□□□ 0.75
USP28-208ENST00000540438 IFNL3Q8IZI9 196 aa19.71■□□□□ 0.75
USP28-208ENST00000540438 VSIG10Q8N0Z9 540 aa19.71■□□□□ 0.75
USP28-208ENST00000540438 ZNF592Q92610 1267 aa19.71■□□□□ 0.75
USP28-208ENST00000540438 TFCP2L1Q9NZI6 479 aa19.71■□□□□ 0.75
USP28-208ENST00000540438 GOLGA6L19H0YKK7 550 aa19.71■□□□□ 0.75
USP28-208ENST00000540438 ZFYP08048 801 aaPredicted RBP19.71■□□□□ 0.75
USP28-208ENST00000540438 ERFEQ4G0M1 354 aa19.71■□□□□ 0.75
USP28-208ENST00000540438 ZNF34Q8IZ26 560 aa19.71■□□□□ 0.75
USP28-208ENST00000540438 FBXO18Q8NFZ0 1043 aa19.71■□□□□ 0.75
USP28-208ENST00000540438 AGXT2Q9BYV1 514 aa19.71■□□□□ 0.75
USP28-208ENST00000540438 SRP68Q9UHB9 627 aaKnown RBP19.71■□□□□ 0.75
USP28-208ENST00000540438 SALL1Q9NSC2 1324 aa19.71■□□□□ 0.75
USP28-208ENST00000540438 DYNLL1P63167 89 aaKnown RBP19.7■□□□□ 0.74
USP28-208ENST00000540438 CHRNDQ07001 517 aa19.7■□□□□ 0.74
USP28-208ENST00000540438 NAA16Q6N069 864 aaPredicted RBP19.7■□□□□ 0.74
USP28-208ENST00000540438 LLPHQ9BRT6 129 aaKnown RBP19.7■□□□□ 0.74
USP28-208ENST00000540438 CLIP2Q9UDT6 1046 aa19.7■□□□□ 0.74
USP28-208ENST00000540438 WDHD1O75717 1129 aaPredicted RBP19.7■□□□□ 0.74
USP28-208ENST00000540438 EIF5P55010 431 aaKnown RBP19.7■□□□□ 0.74
USP28-208ENST00000540438 LPIN2Q92539 896 aa19.7■□□□□ 0.74
USP28-208ENST00000540438 ANGEL1Q9UNK9 670 aaKnown RBP19.7■□□□□ 0.74
USP28-208ENST00000540438 DPCR1Q3MIW9 517 aa19.7■□□□□ 0.74
USP28-208ENST00000540438 TRMT1Q9NXH9 659 aaKnown RBP19.7■□□□□ 0.74
USP28-208ENST00000540438 GOLGA8AA7E2F4 631 aa19.69■□□□□ 0.74
USP28-208ENST00000540438 RANBP6O60518 1105 aaKnown RBP19.69■□□□□ 0.74
USP28-208ENST00000540438 IL6STP40189 918 aaPredicted RBP19.69■□□□□ 0.74
USP28-208ENST00000540438 CHAF1AQ13111 956 aaPredicted RBP19.69■□□□□ 0.74
USP28-208ENST00000540438 APOA5Q6Q788 366 aa19.69■□□□□ 0.74
USP28-208ENST00000540438 ZNF396Q96N95 335 aaPredicted RBP19.69■□□□□ 0.74
USP28-208ENST00000540438 PLA2G12BQ9BX93 195 aa19.69■□□□□ 0.74
USP28-208ENST00000540438 SLC5A1P13866 664 aa19.69■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms